Ggra1505.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1505.t1
Unique NameGgra1505.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length117
Homology
BLAST of Ggra1505.t1 vs. uniprot
Match: A0A2V3J0P6 (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0P6_9FLOR)

HSP 1 Score: 179 bits (455), Expect = 1.800e-56
Identity = 86/116 (74.14%), Postives = 103/116 (88.79%), Query Frame = 0
Query:    1 MASKQKGKKEQSGKSAGRKSMLLDYVDKRVGVITNDGRMILGLLRGFDQVCNIVLEKCVERVFEANKPMQTIASDPLNTFIIRGDNIAVIGEIDAEKDEKETWTSKRGHPINLVHH 116
            M++K KGK +QSG+  GRKSMLLD+V+KRVGVITNDGRM++G + G+DQVCNIVL+KCVERVFE N+PMQTI+SD LNTFIIRGD+IAVIGEID+EKD+KE+WT K GHPI  V H
Sbjct:    1 MSAKPKGKSDQSGRPGGRKSMLLDFVNKRVGVITNDGRMLVGNMLGYDQVCNIVLDKCVERVFEPNQPMQTISSDSLNTFIIRGDDIAVIGEIDSEKDDKESWTGKTGHPIKPVVH 116          
BLAST of Ggra1505.t1 vs. uniprot
Match: A0A0L0VWC4 (U6 snRNA-associated Sm-like protein LSm8 n=5 Tax=Puccinia TaxID=5296 RepID=A0A0L0VWC4_9BASI)

HSP 1 Score: 100 bits (248), Expect = 3.190e-25
Identity = 46/97 (47.42%), Postives = 67/97 (69.07%), Query Frame = 0
Query:   20 SMLLDYVDKRVGVITNDGRMILGLLRGFDQVCNIVLEKCVERVFEANKPMQTIASDPLNTFIIRGDNIAVIGEIDAEKDEKETWTSKRGHPINLVHH 116
            S + DY+DKRV +IT DGR I G L+GFDQ  NI+L   +ERV+ +++PM+ +   PL  +I+RGD+I+VIGE+D E D+   W+S R  P+  + H
Sbjct:    3 SKIADYLDKRVLIITQDGRTITGELKGFDQTTNIILSDSIERVYSSDEPMEEV---PLGLYIVRGDHISVIGELDVEADKNIDWSSIRAEPLYEIRH 96          
BLAST of Ggra1505.t1 vs. uniprot
Match: A0A1Y1XHS3 (U6 snRNA-associated Sm-like protein LSm8 n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1XHS3_9FUNG)

HSP 1 Score: 100 bits (248), Expect = 3.380e-25
Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = 0
Query:   22 LLDYVDKRVGVITNDGRMILGLLRGFDQVCNIVLEKCVERVFEANKPMQTIASDPLNTFIIRGDNIAVIGEIDAEKDEKETWTSKRGHPINLVHH 116
            L DY+D+ + VITNDGR+I+G+L+G+DQ  NI+LE  VER+F   +P + + S  L   IIRGDNIAV+G+ID E+DE   W+  + +PI  V++
Sbjct:    4 LQDYIDQHISVITNDGRVIIGVLKGYDQATNIILEHSVERIF---RPTEGVESSELGLHIIRGDNIAVVGQIDVEEDENIDWSLVQANPILPVNY 95          
BLAST of Ggra1505.t1 vs. uniprot
Match: M2XP62 (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XP62_GALSU)

HSP 1 Score: 98.6 bits (244), Expect = 1.260e-24
Identity = 44/97 (45.36%), Postives = 69/97 (71.13%), Query Frame = 0
Query:   20 SMLLDYVDKRVGVITNDGRMILGLLRGFDQVCNIVLEKCVERVFEANKPMQTIASDPLNTFIIRGDNIAVIGEIDAEKDEKETWTSKRGHPINLVHH 116
            S+L  YVDK V V+TNDGR+++G+L+GFDQ CN++LE  VER+F  +  MQ +A   +  +++RGD+IA++GE+DAEK+ +  +   +  P+  V H
Sbjct:    2 SLLSSYVDKTVSVVTNDGRILIGILKGFDQSCNVILESTVERIFGTDVAMQEVA---VGLYVLRGDDIAILGELDAEKESETDFQQIQAAPLRPVVH 95          
BLAST of Ggra1505.t1 vs. uniprot
Match: A0A194S7Z2 (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Rhodotorula TaxID=5533 RepID=A0A194S7Z2_RHOGW)

HSP 1 Score: 96.3 bits (238), Expect = 1.020e-23
Identity = 47/97 (48.45%), Postives = 67/97 (69.07%), Query Frame = 0
Query:   20 SMLLDYVDKRVGVITNDGRMILGLLRGFDQVCNIVLEKCVERVFEANKPMQTIASDPLNTFIIRGDNIAVIGEIDAEKDEKETWTSKRGHPINLVHH 116
            S L  YVDK+V VIT DGR+I+G L+GFDQ  N++L   VERVF A++P++ +   PL  +I+RGDNI +IGE+D E D++    + R  PI+ + H
Sbjct:    2 SALTAYVDKQVLVITQDGRVIVGELKGFDQTTNVILSGSVERVFSADEPVEEV---PLGVYIVRGDNITLIGEVDTELDKQVDLATVRAEPISELQH 95          
BLAST of Ggra1505.t1 vs. uniprot
Match: A0A087SUD4 (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SUD4_AUXPR)

HSP 1 Score: 95.5 bits (236), Expect = 2.240e-23
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 0
Query:   25 YVDKRVGVITNDGRMILGLLRGFDQVCNIVLEKCVERVFEANKPMQTIASDPLNTFIIRGDNIAVIGEIDAEKDEKETWTSKRGHPINLVHH 116
            YVD  + VITNDGR I+G+LRGFDQ CN++L++C ERV+ +   ++ +    L  ++IRGDNIAVIGE+D E D +  + S R  P+  V H
Sbjct:   10 YVDTTISVITNDGRSIVGVLRGFDQTCNLILDECHERVYSSKAGVEQLV---LGLYVIRGDNIAVIGEVDEELDAQLDFDSLRAEPLQPVTH 98          
BLAST of Ggra1505.t1 vs. uniprot
Match: A0A180GTI4 (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A180GTI4_PUCT1)

HSP 1 Score: 96.7 bits (239), Expect = 3.200e-23
Identity = 46/90 (51.11%), Postives = 64/90 (71.11%), Query Frame = 0
Query:   27 DKRVGVITNDGRMILGLLRGFDQVCNIVLEKCVERVFEANKPMQTIASDPLNTFIIRGDNIAVIGEIDAEKDEKETWTSKRGHPINLVHH 116
            DKRV VIT DGR+I G L+GFDQ  NI+L   VERV+ +++PM+ +   PL  +I+RGD+I+VIGE+D E D K  W+S R  P++ + H
Sbjct:   63 DKRVLVITQDGRIITGELKGFDQTTNIILSDSVERVYSSDEPMEEV---PLGLYIVRGDHISVIGELDVEADAKIDWSSIRAEPLDEIRH 149          
BLAST of Ggra1505.t1 vs. uniprot
Match: A0A7S0JLP8 (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JLP8_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 4.570e-23
Identity = 47/97 (48.45%), Postives = 65/97 (67.01%), Query Frame = 0
Query:   20 SMLLDYVDKRVGVITNDGRMILGLLRGFDQVCNIVLEKCVERVFEANKPMQTIASDPLNTFIIRGDNIAVIGEIDAEKDEKETWTSKRGHPINLVHH 116
            +ML  YVDK V V+TNDGR I+GLL+GFDQ  N++L++C ERVF  +  ++ +    L  +I+RGDNIAV+GE+D E DE    T+    P+  V H
Sbjct:   18 AMLESYVDKVVHVVTNDGRNIVGLLKGFDQTTNVILDECHERVFSTDAGVEQVV---LGLYIVRGDNIAVVGEVDEEADEALELTAIMAEPLKPVVH 111          
BLAST of Ggra1505.t1 vs. uniprot
Match: H6QPF4 (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL) TaxID=418459 RepID=H6QPF4_PUCGT)

HSP 1 Score: 95.9 bits (237), Expect = 6.410e-23
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 0
Query:   27 DKRVGVITNDGRMILGLLRGFDQVCNIVLEKCVERVFEANKPMQTIASDPLNTFIIRGDNIAVIGEIDAEKDEKETWTSKRGHPINLVHH 116
            DKRV VIT DGR I G L+GFDQ  NI+L   VERV+ +++PM+ +   PL  +I+RGD+I+VIGE+D E D K  W+S R  P++ + H
Sbjct:   63 DKRVLVITQDGRTITGELKGFDQTTNIILSDSVERVYSSDEPMEEV---PLGLYIVRGDHISVIGELDVEADAKIDWSSIRAEPLDEIRH 149          
BLAST of Ggra1505.t1 vs. uniprot
Match: A0A0L6VM58 (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6VM58_9BASI)

HSP 1 Score: 94.7 bits (234), Expect = 1.120e-22
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 0
Query:   27 DKRVGVITNDGRMILGLLRGFDQVCNIVLEKCVERVFEANKPMQTIASDPLNTFIIRGDNIAVIGEIDAEKDEKETWTSKRGHPINLVHH 116
            DKRV VIT DGR I G L+GFDQ  NI+L   +ERVF +++PM+ +   PL  +I+RGD+I+VIGE+D + D K  W S R  P++ + H
Sbjct:   45 DKRVLVITQDGRTITGELKGFDQTTNIILSDSIERVFSSDEPMEEV---PLGLYIVRGDHISVIGELDVDADTKIDWPSIRAEPLDEIRH 131          
The following BLAST results are available for this feature:
BLAST of Ggra1505.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0P61.800e-5674.14U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=G... [more]
A0A0L0VWC43.190e-2547.42U6 snRNA-associated Sm-like protein LSm8 n=5 Tax=P... [more]
A0A1Y1XHS33.380e-2549.47U6 snRNA-associated Sm-like protein LSm8 n=3 Tax=N... [more]
M2XP621.260e-2445.36U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=G... [more]
A0A194S7Z21.020e-2348.45U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=R... [more]
A0A087SUD42.240e-2348.91U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=A... [more]
A0A180GTI43.200e-2351.11U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=P... [more]
A0A7S0JLP84.570e-2348.45U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=C... [more]
H6QPF46.410e-2351.11U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=P... [more]
A0A0L6VM581.120e-2250.00U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=P... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 20..92
e-value: 1.5E-16
score: 71.0
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 22..91
e-value: 5.0E-17
score: 61.4
NoneNo IPR availableGENE3D2.30.30.100coord: 19..113
e-value: 5.7E-27
score: 95.4
NoneNo IPR availablePANTHERPTHR15588:SF9U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8coord: 13..116
IPR044642U6 snRNA-associated Sm-like protein Lsm1/8PANTHERPTHR15588LSM1coord: 13..116
IPR034103Sm-like protein Lsm8CDDcd01727LSm8coord: 20..112
e-value: 6.28066E-38
score: 121.094
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 18..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:276201..276640 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1505.t1Ggra1505.t1Gracilaria gracilis GNS1m malemRNAtig00000844_pilon 276201..276640 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1505.t1 ID=Ggra1505.t1|Name=Ggra1505.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=117bp
MASKQKGKKEQSGKSAGRKSMLLDYVDKRVGVITNDGRMILGLLRGFDQV
CNIVLEKCVERVFEANKPMQTIASDPLNTFIIRGDNIAVIGEIDAEKDEK
ETWTSKRGHPINLVHH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR044642PTHR15588
IPR034103Lsm8
IPR010920LSM_dom_sf