Ggra1505.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1505.t1
Unique NameGgra1505.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length117
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:276201..276640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5297.GMQ_17881T0
Preferred namelsm8
PFAMsLSM
Max annot lvl4751|Fungi
KEGG koko:K12627
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005688,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016072,GO:0022613,GO:0030532,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0071011,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0120115,GO:1901360,GO:1901363,GO:1990904
Evalue9.66e-27
EggNOG OGsKOG1784@1|root,KOG1784@2759|Eukaryota,3A88G@33154|Opisthokonta,3P6PA@4751|Fungi,3V1NF@5204|Basidiomycota,2YEMF@29000|Pucciniomycotina
DescriptionsnRNP Sm proteins
COG categoryA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1505Ggra1505Gracilaria gracilis GNS1m malegenetig00000844_pilon 276201..276640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1505.t1Ggra1505.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 276201..276640 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1505.t1.start1Ggra1505.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 276201..276203 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1505.t1.CDS1Ggra1505.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 276201..276521 +
Ggra1505.t1.CDS2Ggra1505.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 276611..276640 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1505.t1.exon1Ggra1505.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 276201..276521 +
Ggra1505.t1.exon2Ggra1505.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 276611..276640 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1505.t1.intron1Ggra1505.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 276522..276610 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1505.t1.stop1Ggra1505.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 276638..276640 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1505.t1 ID=Ggra1505.t1|Name=Ggra1505.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=117bp
MASKQKGKKEQSGKSAGRKSMLLDYVDKRVGVITNDGRMILGLLRGFDQV
CNIVLEKCVERVFEANKPMQTIASDPLNTFIIRGDNIAVIGEIDAEKDEK
ETWTSKRGHPINLVHH*
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spliced messenger RNA

>Ggra1505.t1 ID=Ggra1505.t1|Name=Ggra1505.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp|location=Sequence derived from alignment at tig00000844_pilon:276201..276640+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCTAAGCAAAAAGGAAAGAAAGAGCAATCGGGGAAGAGCGCAGG
GCGAAAATCAATGTTACTTGACTATGTTGACAAAAGAGTGGGCGTGATTA
CAAACGATGGGCGCATGATTTTGGGGCTTCTACGAGGATTCGATCAGGTA
TGCAACATCGTTCTTGAGAAGTGCGTTGAGCGCGTGTTTGAAGCGAACAA
ACCTATGCAAACAATCGCATCTGATCCACTAAATACGTTCATCATTAGAG
GTGATAACATAGCAGTCATTGGTGAGATAGACGCGGAGAAGGATGAAAAA
GAAACATGGACTTCTAAGCGGGGACATCCTATAAATCTAGTGCACCACTA
A
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protein sequence of Ggra1505.t1

>Ggra1505.t1 ID=Ggra1505.t1|Name=Ggra1505.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=117bp
MASKQKGKKEQSGKSAGRKSMLLDYVDKRVGVITNDGRMILGLLRGFDQV
CNIVLEKCVERVFEANKPMQTIASDPLNTFIIRGDNIAVIGEIDAEKDEK
ETWTSKRGHPINLVHH*
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mRNA from alignment at tig00000844_pilon:276201..276640+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1505.t1 ID=Ggra1505.t1|Name=Ggra1505.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=440bp|location=Sequence derived from alignment at tig00000844_pilon:276201..276640+ (Gracilaria gracilis GNS1m male)
ATGGCTTCTAAGCAAAAAGGAAAGAAAGAGCAATCGGGGAAGAGCGCAGG
GCGAAAATCAATGTTACTTGACTATGTTGACAAAAGAGTGGGCGTGATTA
CAAACGATGGGCGCATGATTTTGGGGCTTCTACGAGGATTCGATCAGGTA
TGCAACATCGTTCTTGAGAAGTGCGTTGAGCGCGTGTTTGAAGCGAACAA
ACCTATGCAAACAATCGCATCTGATCCACTAAATACGTTCATCATTAGAG
GTGATAACATAGCAGTCATTGGTGAGATAGACGCGGAGAAGGATGAAAAA
GAAACATGGACTTCTAAGCGGGTACGCAATGCATTTCAGTCCTCGAGCTT
TTCCAACAACGAATTGTATCTGACTTTGTTTATTTGTTTTGTCGTGCCGG
GCGCAACCAGGGACATCCTATAAATCTAGTGCACCACTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:276201..276640+

>Ggra1505.t1 ID=Ggra1505.t1|Name=Ggra1505.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=351bp|location=Sequence derived from alignment at tig00000844_pilon:276201..276640+ (Gracilaria gracilis GNS1m male)
ATGGCTTCTAAGCAAAAAGGAAAGAAAGAGCAATCGGGGAAGAGCGCAGG
GCGAAAATCAATGTTACTTGACTATGTTGACAAAAGAGTGGGCGTGATTA
CAAACGATGGGCGCATGATTTTGGGGCTTCTACGAGGATTCGATCAGGTA
TGCAACATCGTTCTTGAGAAGTGCGTTGAGCGCGTGTTTGAAGCGAACAA
ACCTATGCAAACAATCGCATCTGATCCACTAAATACGTTCATCATTAGAG
GTGATAACATAGCAGTCATTGGTGAGATAGACGCGGAGAAGGATGAAAAA
GAAACATGGACTTCTAAGCGGGGACATCCTATAAATCTAGTGCACCACTA
A
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