Ggra1467.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1467.t1
Unique NameGgra1467.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length500
Homology
BLAST of Ggra1467.t1 vs. uniprot
Match: A0A2V3J1M1 (PsbB mRNA maturation factor Mbb1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1M1_9FLOR)

HSP 1 Score: 183 bits (464), Expect = 7.510e-48
Identity = 365/501 (72.85%), Postives = 387/501 (77.25%), Query Frame = 0
Query:    1 MRSDCTKMSASTNH--NALNVGTGDGKVAAPRDSTREALELLYESAKAEEKAGRIQNAVQMYESLVKLNTSNGRAWVRYVKLLQRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKGTSIEGRIAVQLWQAWARMEEKLGNVHKALQLYQQAVSIYSNDAMLYCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAVSRGKEVAALIHAWAVLEWEAGNIDKSRELFNKAVGIDASCSWLWLWFGRFEQANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFRRAAELESSRELFEMDPESPLRRPWRKI 499
            +R++ T  +AS+    +A    TG+G+VA PRD TREALELLYESAKAEE AGR+ NA++MYESLVKLN +NGR WVRYVKLL+RD                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      EGR AVQLWQ                       S+Y NDAMLYCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VSRGKE AAL+HAWAVLEWE GN++++RELF KAV +D SCSWLWLWFGRFE AN                                          MFRRAA+LESSRELFEMDPESPLRRPWRK+
Sbjct:   47 LRTELTSSNASSVSVTSATLTKTGEGQVAPPRDGTREALELLYESAKAEENAGRVCNALRMYESLVKLNANNGRVWVRYVKLLERDGQYGRVTDVLKRALRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRTAVQLWQXXXXXXXXXXXXXXXXXXXXXXXSVYPNDAMLYCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVSRGKETAALLHAWAVLEWEKGNVEQARELFRKAVAVDRSCSWLWLWFGRFELANGNLSVARHYISRSINLDPADGSPWRAWAELERGVGDEERARFMFRRAAQLESSRELFEMDPESPLRRPWRKL 547          
BLAST of Ggra1467.t1 vs. uniprot
Match: R7QPX8 (TPR repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPX8_CHOCR)

HSP 1 Score: 178 bits (451), Expect = 4.840e-46
Identity = 354/471 (75.16%), Postives = 374/471 (79.41%), Query Frame = 0
Query:   29 PRDSTREALELLYESAKAEEKAGRIQNAVQMYESLVKLNTSNGRAWVRYVKLLQRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKGTSIEGRIAVQLWQAWARMEEKLGNVHKALQLYQQAVSIYSNDAMLYCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAVSRGKEVAALIHAWAVLEWEAGNIDKSRELFNKAVGIDASCSWLWLWFGRFEQANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFRRAAELESSRELFEMDPESPLRRPWRKI 499
            P   TREALELLYESAK EEKAGR+ NA+ MYESLV+L+TSNGRAWVRY  +LQR                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    SI GR AVQLWQAWARMEEK GN+H A+ LY++A + Y +D MLYC XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  S  S+GKE AAL HAWA +EWE+   +K+RELF +AV +D  CSWLWLWF RFE A+                                          MFRRAAELESSRELFEMDPESPLRRPWRK+
Sbjct:   73 PEQGTREALELLYESAKTEEKAGRVTNALGMYESLVQLDTSNGRAWVRYATVLQRGGETNRAREVLRRALKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSITGRSAVQLWQAWARMEEKSGNLHGAISLYRRAATAYPDDPMLYCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGSKASKGKERAALFHAWAAMEWESEREEKARELFGEAVKVDDKCSWLWLWFARFEIAHNNISVARHYISRSINLDPKDSSPWRAWAELERSVGDEEQARFMFRRAAELESSRELFEMDPESPLRRPWRKL 543          
BLAST of Ggra1467.t1 vs. uniprot
Match: A0A7S2ZYH1 (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZYH1_9RHOD)

HSP 1 Score: 77.8 bits (190), Expect = 1.530e-11
Identity = 75/119 (63.03%), Postives = 93/119 (78.15%), Query Frame = 0
Query:  376 GKEVAALIHAWAVLEWEAGNIDKSRELFNKAVGIDASCSWLWLWFGRFEQANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFRRAAELESSRELFEMDPESPLRR 494
            G++VA L+HAWA  EW+      +RE+F +AV +D +C WLW+WFGRFE       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++RA EL++ +EL++ DP+ PL R
Sbjct:  441 GRDVAKLLHAWAAAEWQEQEKATAREIFQRAVKVDRTCGWLWMWFGRFELEEENFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQRANELDTRKELYDCDPDHPLAR 559          
BLAST of Ggra1467.t1 vs. uniprot
Match: A0A7S3F179 (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F179_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 7.210e-10
Identity = 47/171 (27.49%), Postives = 69/171 (40.35%), Query Frame = 0
Query:  265 SKGTSIEGRIAVQLWQAWARMEEKLGNVHKALQLYQQAVSIYSNDAMLYC----------SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAVSRGKEVAALIHAWAVLEWEAGNIDKSRELFNKAVGIDAS-CSWLWLWFGRFE 424
            ++G     R AVQLWQ+WARME++LG+   AL+LY++AV  YS D  L            +                                                       + V+  +E+  L+HAWAV EW++G    +R+LF +A  +    C WL+ W  RFE
Sbjct:  268 ARGVPAGRRGAVQLWQSWARMEQRLGSPSAALRLYERAVRFYSTDEQLLIEWSKLLTEDGARDATNWDKARTILQRVTGRRRPRPYAFQCFAALEQQAGNIAQARELYERGASVRATGVAVQQEMVPLLHAWAVFEWKSGEKSAARKLFERAEAVSPKPCGWLYQWHARFE 438          
BLAST of Ggra1467.t1 vs. uniprot
Match: A0A0M0J5J4 (Psbb mRNA maturation factor mbb1 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J5J4_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 5.780e-7
Identity = 44/161 (27.33%), Postives = 60/161 (37.27%), Query Frame = 0
Query:  275 AVQLWQAWARMEEKLGNVHKALQLYQQAVSIYSNDAMLYCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAVSR-------GKEVAALIHAWAVLEWEAGNIDKSRELFNKA-VGIDASCSWLWLWFGRFEQAN 427
            AVQLWQ+WAR+E++L     AL  Y++A  +Y +DA L                                                           A  R         E   L+HAWAVLEW  G   ++R LF++A    D++C WL  W  RFE  +
Sbjct:  231 AVQLWQSWARIEQRLERPALALATYKRATQLYKDDAQLLVGWAKLEGEHGDVGTSRALFARAVSSVAKHSPYAYQCAAALEVRCGEVQAARALYAAGAAVRVLPQGPTATERMPLLHAWAVLEWRHGERREARRLFDEAEAASDSACGWLLQWRARFESES 391          
The following BLAST results are available for this feature:
BLAST of Ggra1467.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J1M17.510e-4872.85PsbB mRNA maturation factor Mbb1, chloroplastic n=... [more]
R7QPX84.840e-4675.16TPR repeat-containing protein n=1 Tax=Chondrus cri... [more]
A0A7S2ZYH11.530e-1163.03Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A7S3F1797.210e-1027.49Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A0M0J5J45.780e-727.33Psbb mRNA maturation factor mbb1 n=1 Tax=Chrysochr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 290..322
e-value: 99.0
score: 8.1
coord: 51..83
e-value: 0.83
score: 18.7
coord: 187..219
e-value: 480.0
score: 3.1
coord: 221..253
e-value: 2.6
score: 17.0
coord: 85..117
e-value: 0.013
score: 24.6
coord: 153..185
e-value: 720.0
score: 1.8
coord: 394..426
e-value: 16.0
score: 13.8
coord: 255..288
e-value: 0.0093
score: 25.2
coord: 119..151
e-value: 3.0
score: 16.9
coord: 324..356
e-value: 0.16
score: 21.0
coord: 428..460
e-value: 110.0
score: 7.7
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 71..104
e-value: 270.0
score: 2.4
coord: 139..172
e-value: 46.0
score: 9.1
coord: 241..274
e-value: 68.0
score: 7.7
coord: 310..343
e-value: 36.0
score: 10.1
coord: 380..413
e-value: 88.0
score: 6.6
coord: 173..206
e-value: 0.22
score: 20.6
coord: 37..70
e-value: 28.0
score: 11.0
coord: 207..240
e-value: 1.9
score: 17.5
coord: 105..138
e-value: 57.0
score: 8.3
coord: 276..309
e-value: 0.2
score: 20.8
coord: 414..447
e-value: 440.0
score: 0.5
coord: 448..481
e-value: 450.0
score: 0.5
IPR019734Tetratricopeptide repeatPFAMPF13174TPR_6coord: 276..308
e-value: 0.094
score: 13.4
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 174..206
e-value: 0.0033
score: 17.5
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 71..104
score: 8.3784
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 173..206
score: 8.7324
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 207..240
score: 9.2339
NoneNo IPR availablePFAMPF14559TPR_19coord: 49..105
e-value: 1.4E-5
score: 25.5
NoneNo IPR availablePFAMPF13432TPR_16coord: 212..265
e-value: 0.0026
score: 18.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 25..273
e-value: 2.5E-44
score: 153.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 274..486
e-value: 8.5E-32
score: 112.5
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 37..275
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 278..479
IPR044624Tetratricopeptide-like repeat protein Mbb1-likePANTHERPTHR44917PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107coord: 278..477
coord: 161..271
coord: 42..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:163258..165156 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1467.t1Ggra1467.t1Gracilaria gracilis GNS1m malemRNAtig00000844_pilon 163258..165156 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1467.t1 ID=Ggra1467.t1|Name=Ggra1467.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=500bp
MRSDCTKMSASTNHNALNVGTGDGKVAAPRDSTREALELLYESAKAEEKA
GRIQNAVQMYESLVKLNTSNGRAWVRYVKLLQRDGELDRATGVLKRALRY
NPRNAILWQTWADFEKDNGNFVTARRLFGKALEANPRLPSLYHSWGSMEY
RDGHVEKAKRLYQEGLRMCPTATRLYHSLGVLHDKKGNSKSARIILTQGL
KLEPDNPFLHHALGVLEYRAGRVAAARENFARAIRVDPRHTLSWLSFAQL
EEYEGNSDLARKYYSKGTSIEGRIAVQLWQAWARMEEKLGNVHKALQLYQ
QAVSIYSNDAMLYCSWGKLVESRGEIAIARSLFKKGIQVDPTKAYLWQSL
ALLEQRQLDKDSARALFAKGSAVSRGKEVAALIHAWAVLEWEAGNIDKSR
ELFNKAVGIDASCSWLWLWFGRFEQANGNISVARHYISRSINLDPTDGSP
WRAWAELERGAGDEERARFMFRRAAELESSRELFEMDPESPLRRPWRKI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003107HAT
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR044624Mbb1-like