Ggra1467.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1467.t1
Unique NameGgra1467.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length500
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:163258..165156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CML157CT
Preferred nameTTC6
PFAMsTPR_1,TPR_11,TPR_14,TPR_16,TPR_19,TPR_8
Max annot lvl2759|Eukaryota
KEGG koko:K12869
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Evalue2.58e-06
EggNOG OGsCOG0457@1|root,KOG1124@2759|Eukaryota
Descriptioncellular component assembly
COG categoryO
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1467Ggra1467Gracilaria gracilis GNS1m malegenetig00000844_pilon 163258..165156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1467.t1Ggra1467.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 163258..165156 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1467.t1.start1Ggra1467.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 163258..163260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1467.t1.CDS1Ggra1467.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 163258..163307 +
Ggra1467.t1.CDS2Ggra1467.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 163606..163614 +
Ggra1467.t1.CDS3Ggra1467.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000844_pilon 163716..165156 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1467.t1.exon1Ggra1467.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 163258..163307 +
Ggra1467.t1.exon2Ggra1467.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 163606..163614 +
Ggra1467.t1.exon3Ggra1467.t1.exon3Gracilaria gracilis GNS1m maleexontig00000844_pilon 163716..165156 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1467.t1.intron1Ggra1467.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 163308..163605 +
Ggra1467.t1.intron2Ggra1467.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000844_pilon 163615..163715 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1467.t1.stop1Ggra1467.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 165154..165156 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1467.t1 ID=Ggra1467.t1|Name=Ggra1467.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=500bp
MRSDCTKMSASTNHNALNVGTGDGKVAAPRDSTREALELLYESAKAEEKA
GRIQNAVQMYESLVKLNTSNGRAWVRYVKLLQRDGELDRATGVLKRALRY
NPRNAILWQTWADFEKDNGNFVTARRLFGKALEANPRLPSLYHSWGSMEY
RDGHVEKAKRLYQEGLRMCPTATRLYHSLGVLHDKKGNSKSARIILTQGL
KLEPDNPFLHHALGVLEYRAGRVAAARENFARAIRVDPRHTLSWLSFAQL
EEYEGNSDLARKYYSKGTSIEGRIAVQLWQAWARMEEKLGNVHKALQLYQ
QAVSIYSNDAMLYCSWGKLVESRGEIAIARSLFKKGIQVDPTKAYLWQSL
ALLEQRQLDKDSARALFAKGSAVSRGKEVAALIHAWAVLEWEAGNIDKSR
ELFNKAVGIDASCSWLWLWFGRFEQANGNISVARHYISRSINLDPTDGSP
WRAWAELERGAGDEERARFMFRRAAELESSRELFEMDPESPLRRPWRKI*
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spliced messenger RNA

>Ggra1467.t1 ID=Ggra1467.t1|Name=Ggra1467.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1500bp|location=Sequence derived from alignment at tig00000844_pilon:163258..165156+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAGCGACTGCACCAAAATGAGCGCGAGCACCAACCACAACGCGCT
CAATGTCGGGACCGGCGACGGCAAAGTTGCTGCGCCACGAGACAGCACGC
GCGAAGCACTCGAGTTGCTCTATGAATCGGCGAAGGCGGAGGAGAAGGCC
GGGCGAATTCAGAATGCTGTGCAGATGTATGAATCGCTAGTTAAGCTCAA
TACAAGTAACGGCAGGGCCTGGGTGCGCTACGTCAAGTTGCTGCAGCGTG
ATGGTGAGCTCGACAGGGCTACAGGCGTTTTGAAGAGAGCATTGAGATAT
AACCCACGCAACGCCATTCTTTGGCAGACCTGGGCAGATTTCGAGAAGGA
TAACGGTAATTTTGTTACTGCTCGTCGTCTTTTTGGCAAAGCGTTAGAAG
CCAACCCGCGTCTTCCATCACTCTATCACTCCTGGGGGTCAATGGAGTAT
AGAGATGGCCATGTGGAAAAAGCGAAACGCTTGTATCAGGAAGGACTACG
GATGTGCCCAACTGCTACACGCCTTTATCATTCTTTGGGAGTTTTGCATG
ATAAGAAGGGTAATTCCAAGTCAGCCCGAATCATTTTGACTCAAGGTCTC
AAGCTTGAACCTGATAATCCGTTTTTGCATCATGCCCTTGGTGTACTCGA
GTACAGAGCTGGTCGCGTTGCGGCTGCCCGAGAAAATTTTGCTCGAGCGA
TACGTGTTGATCCGCGTCATACTTTGTCCTGGCTCTCGTTTGCACAATTA
GAAGAATATGAAGGAAATTCTGATCTGGCAAGGAAGTACTACTCCAAGGG
AACTTCCATTGAAGGCAGAATCGCTGTTCAACTTTGGCAGGCATGGGCTC
GAATGGAGGAGAAGCTGGGAAACGTACACAAAGCGTTACAACTCTACCAG
CAGGCAGTCTCCATCTATTCGAATGATGCGATGCTGTACTGTTCGTGGGG
CAAACTGGTTGAGAGCCGTGGTGAGATTGCGATTGCTAGATCTTTGTTCA
AGAAGGGCATCCAGGTAGATCCAACAAAAGCGTATCTCTGGCAATCCCTT
GCTCTGCTGGAACAGAGGCAATTGGATAAGGATTCTGCGCGCGCATTGTT
CGCGAAAGGGTCAGCAGTGAGTAGAGGCAAGGAGGTTGCGGCGCTTATCC
ACGCATGGGCTGTATTGGAATGGGAAGCAGGCAATATTGACAAATCCCGA
GAACTCTTTAATAAAGCAGTCGGAATTGATGCATCATGCTCGTGGCTATG
GCTTTGGTTTGGAAGGTTTGAACAGGCGAATGGGAATATTTCTGTAGCTC
GCCACTACATCTCACGAAGCATAAACCTTGACCCAACCGATGGGTCACCT
TGGCGTGCGTGGGCGGAGTTAGAACGCGGAGCAGGCGATGAGGAGAGGGC
CCGGTTTATGTTTCGGCGGGCCGCAGAATTAGAATCTAGTCGGGAACTGT
TTGAGATGGATCCTGAGAGTCCATTGCGGCGCCCCTGGAGGAAGATTTAG
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protein sequence of Ggra1467.t1

>Ggra1467.t1 ID=Ggra1467.t1|Name=Ggra1467.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=500bp
MRSDCTKMSASTNHNALNVGTGDGKVAAPRDSTREALELLYESAKAEEKA
GRIQNAVQMYESLVKLNTSNGRAWVRYVKLLQRDGELDRATGVLKRALRY
NPRNAILWQTWADFEKDNGNFVTARRLFGKALEANPRLPSLYHSWGSMEY
RDGHVEKAKRLYQEGLRMCPTATRLYHSLGVLHDKKGNSKSARIILTQGL
KLEPDNPFLHHALGVLEYRAGRVAAARENFARAIRVDPRHTLSWLSFAQL
EEYEGNSDLARKYYSKGTSIEGRIAVQLWQAWARMEEKLGNVHKALQLYQ
QAVSIYSNDAMLYCSWGKLVESRGEIAIARSLFKKGIQVDPTKAYLWQSL
ALLEQRQLDKDSARALFAKGSAVSRGKEVAALIHAWAVLEWEAGNIDKSR
ELFNKAVGIDASCSWLWLWFGRFEQANGNISVARHYISRSINLDPTDGSP
WRAWAELERGAGDEERARFMFRRAAELESSRELFEMDPESPLRRPWRKI*
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mRNA from alignment at tig00000844_pilon:163258..165156+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1467.t1 ID=Ggra1467.t1|Name=Ggra1467.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1899bp|location=Sequence derived from alignment at tig00000844_pilon:163258..165156+ (Gracilaria gracilis GNS1m male)
ATGCGCAGCGACTGCACCAAAATGAGCGCGAGCACCAACCACAACGCGCT
GTGCGTACACCAATGGTCGGTGGTGCGTCTGCCCGAGCGGAACGCATTTC
CGCCGCCCCACCGCCATTTGCTCACGCGTTCTTCGCCATCCGCGTGGAAT
GAAATGACGCACGTGCCGCCCGTTCTCTTCTGCTGCTCTTGTCTTCCTTG
AGCCGTATTTCTATCCCGTACGGCTCTGCTCCTCACCCGGAGTTTGGTAG
CGAACATGGCTGAGCTTCCTGCCTTTGCTGTTTCTGCGCCACCGTTTCCT
CCGCTCTACGCGCGCGATTTGGCTGTGTCATCGTTGACCAAACCGGAGCA
ATGTCGGGTACGAAAGCTACCACGAAGAACAAACGTTGAGCGACGGGTGC
GTACTGATACTGCTTCTACTCTGCCCTCTGTGTATGTCACCACGTCCACG
CTCACCAGGACCGGCGACGGCAAAGTTGCTGCGCCACGAGACAGCACGCG
CGAAGCACTCGAGTTGCTCTATGAATCGGCGAAGGCGGAGGAGAAGGCCG
GGCGAATTCAGAATGCTGTGCAGATGTATGAATCGCTAGTTAAGCTCAAT
ACAAGTAACGGCAGGGCCTGGGTGCGCTACGTCAAGTTGCTGCAGCGTGA
TGGTGAGCTCGACAGGGCTACAGGCGTTTTGAAGAGAGCATTGAGATATA
ACCCACGCAACGCCATTCTTTGGCAGACCTGGGCAGATTTCGAGAAGGAT
AACGGTAATTTTGTTACTGCTCGTCGTCTTTTTGGCAAAGCGTTAGAAGC
CAACCCGCGTCTTCCATCACTCTATCACTCCTGGGGGTCAATGGAGTATA
GAGATGGCCATGTGGAAAAAGCGAAACGCTTGTATCAGGAAGGACTACGG
ATGTGCCCAACTGCTACACGCCTTTATCATTCTTTGGGAGTTTTGCATGA
TAAGAAGGGTAATTCCAAGTCAGCCCGAATCATTTTGACTCAAGGTCTCA
AGCTTGAACCTGATAATCCGTTTTTGCATCATGCCCTTGGTGTACTCGAG
TACAGAGCTGGTCGCGTTGCGGCTGCCCGAGAAAATTTTGCTCGAGCGAT
ACGTGTTGATCCGCGTCATACTTTGTCCTGGCTCTCGTTTGCACAATTAG
AAGAATATGAAGGAAATTCTGATCTGGCAAGGAAGTACTACTCCAAGGGA
ACTTCCATTGAAGGCAGAATCGCTGTTCAACTTTGGCAGGCATGGGCTCG
AATGGAGGAGAAGCTGGGAAACGTACACAAAGCGTTACAACTCTACCAGC
AGGCAGTCTCCATCTATTCGAATGATGCGATGCTGTACTGTTCGTGGGGC
AAACTGGTTGAGAGCCGTGGTGAGATTGCGATTGCTAGATCTTTGTTCAA
GAAGGGCATCCAGGTAGATCCAACAAAAGCGTATCTCTGGCAATCCCTTG
CTCTGCTGGAACAGAGGCAATTGGATAAGGATTCTGCGCGCGCATTGTTC
GCGAAAGGGTCAGCAGTGAGTAGAGGCAAGGAGGTTGCGGCGCTTATCCA
CGCATGGGCTGTATTGGAATGGGAAGCAGGCAATATTGACAAATCCCGAG
AACTCTTTAATAAAGCAGTCGGAATTGATGCATCATGCTCGTGGCTATGG
CTTTGGTTTGGAAGGTTTGAACAGGCGAATGGGAATATTTCTGTAGCTCG
CCACTACATCTCACGAAGCATAAACCTTGACCCAACCGATGGGTCACCTT
GGCGTGCGTGGGCGGAGTTAGAACGCGGAGCAGGCGATGAGGAGAGGGCC
CGGTTTATGTTTCGGCGGGCCGCAGAATTAGAATCTAGTCGGGAACTGTT
TGAGATGGATCCTGAGAGTCCATTGCGGCGCCCCTGGAGGAAGATTTAG
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Coding sequence (CDS) from alignment at tig00000844_pilon:163258..165156+

>Ggra1467.t1 ID=Ggra1467.t1|Name=Ggra1467.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1500bp|location=Sequence derived from alignment at tig00000844_pilon:163258..165156+ (Gracilaria gracilis GNS1m male)
ATGCGCAGCGACTGCACCAAAATGAGCGCGAGCACCAACCACAACGCGCT
CAATGTCGGGACCGGCGACGGCAAAGTTGCTGCGCCACGAGACAGCACGC
GCGAAGCACTCGAGTTGCTCTATGAATCGGCGAAGGCGGAGGAGAAGGCC
GGGCGAATTCAGAATGCTGTGCAGATGTATGAATCGCTAGTTAAGCTCAA
TACAAGTAACGGCAGGGCCTGGGTGCGCTACGTCAAGTTGCTGCAGCGTG
ATGGTGAGCTCGACAGGGCTACAGGCGTTTTGAAGAGAGCATTGAGATAT
AACCCACGCAACGCCATTCTTTGGCAGACCTGGGCAGATTTCGAGAAGGA
TAACGGTAATTTTGTTACTGCTCGTCGTCTTTTTGGCAAAGCGTTAGAAG
CCAACCCGCGTCTTCCATCACTCTATCACTCCTGGGGGTCAATGGAGTAT
AGAGATGGCCATGTGGAAAAAGCGAAACGCTTGTATCAGGAAGGACTACG
GATGTGCCCAACTGCTACACGCCTTTATCATTCTTTGGGAGTTTTGCATG
ATAAGAAGGGTAATTCCAAGTCAGCCCGAATCATTTTGACTCAAGGTCTC
AAGCTTGAACCTGATAATCCGTTTTTGCATCATGCCCTTGGTGTACTCGA
GTACAGAGCTGGTCGCGTTGCGGCTGCCCGAGAAAATTTTGCTCGAGCGA
TACGTGTTGATCCGCGTCATACTTTGTCCTGGCTCTCGTTTGCACAATTA
GAAGAATATGAAGGAAATTCTGATCTGGCAAGGAAGTACTACTCCAAGGG
AACTTCCATTGAAGGCAGAATCGCTGTTCAACTTTGGCAGGCATGGGCTC
GAATGGAGGAGAAGCTGGGAAACGTACACAAAGCGTTACAACTCTACCAG
CAGGCAGTCTCCATCTATTCGAATGATGCGATGCTGTACTGTTCGTGGGG
CAAACTGGTTGAGAGCCGTGGTGAGATTGCGATTGCTAGATCTTTGTTCA
AGAAGGGCATCCAGGTAGATCCAACAAAAGCGTATCTCTGGCAATCCCTT
GCTCTGCTGGAACAGAGGCAATTGGATAAGGATTCTGCGCGCGCATTGTT
CGCGAAAGGGTCAGCAGTGAGTAGAGGCAAGGAGGTTGCGGCGCTTATCC
ACGCATGGGCTGTATTGGAATGGGAAGCAGGCAATATTGACAAATCCCGA
GAACTCTTTAATAAAGCAGTCGGAATTGATGCATCATGCTCGTGGCTATG
GCTTTGGTTTGGAAGGTTTGAACAGGCGAATGGGAATATTTCTGTAGCTC
GCCACTACATCTCACGAAGCATAAACCTTGACCCAACCGATGGGTCACCT
TGGCGTGCGTGGGCGGAGTTAGAACGCGGAGCAGGCGATGAGGAGAGGGC
CCGGTTTATGTTTCGGCGGGCCGCAGAATTAGAATCTAGTCGGGAACTGT
TTGAGATGGATCCTGAGAGTCCATTGCGGCGCCCCTGGAGGAAGATTTAG
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