Ggra1454.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1454.t1
Unique NameGgra1454.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length399
Homology
BLAST of Ggra1454.t1 vs. uniprot
Match: A0A2V3J0K0 (Nucleoporin Nup43 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0K0_9FLOR)

HSP 1 Score: 551 bits (1420), Expect = 2.710e-194
Identity = 271/399 (67.92%), Postives = 325/399 (81.45%), Query Frame = 0
Query:    1 MDGRRRTIPRSARRAPTKQVPQHLPSQSLAATAGNRYVPDFNPEARDPSLGLPLLA-NPVSQTVSTRAPAISFTATTQTCVRWLPNTAEHAVALAGSGDGEQDALTFYGVTARQEVAFDIVRELPHKGKVNKICVTDEGQIFTASSQGSVYALSGSDPTKAEIRKVYDMEKFGKKESISSVAYSSVGLIAAGVHGSLMIVDVTTGKARGLQFDEVGFRDLISVDERGTEIITAGCDVAVWDVRSGDRTDLMHPGKSVATCVCTDAGQPHFVMGGMRNGELVVWDRRSDSIPLNRIGLHSGPIWDLGVVSSSRAGLLLSCGEDGHVRMVDFASAGDRGGFGSMEQAYCDQGEFWRAQVSQQDIANLSRETMAVNSVNAHRNAALFAYATDAGVVAFGSLS 398
            M G RRTIPRSARRAP K  P    S++ + T  NRYVPDFN +A + +  +PL+A +P  Q ++   P I+ T+  Q C+RWLPN +E AV + GSGDGE D LTFY VTA++E+ +  + E+ H+GKVNKI VTDEGQ++TASS GSVY +SG DP K  + K+ D+EKFGK ES+SSVA S++GL+AAGVHGSLMI+D  TG+   LQFDEVGFRDLISVDERGTEI+TAGCD+AVWDVRSGDRTDL+HPGK VATCV  D GQPHFVMGGMRNGEL +WDRRSDS+P NRIGLHSGPIWDLGVVSSSRAG+LLSCGEDG+V +VDF  AGDRGGFGS+EQA+CDQGEFWRA +S  DI +++RE +AVNSVN+HR+AALFAYATD GV+ FG+LS
Sbjct:    1 MHGMRRTIPRSARRAPVKSEPAPASSKTFSTTEPNRYVPDFNAKANETASEMPLVAKHPQPQMIT--PPLITVTSAAQNCIRWLPNVSEDAVGVIGSGDGENDFLTFYSVTAKEELDYKSIVEVAHEGKVNKISVTDEGQVYTASSTGSVYTISGLDPHKKTLHKICDIEKFGKPESVSSVASSAIGLVAAGVHGSLMIIDNNTGQVSSLQFDEVGFRDLISVDERGTEIVTAGCDIAVWDVRSGDRTDLIHPGKCVATCVGIDPGQPHFVMGGMRNGELAIWDRRSDSLPFNRIGLHSGPIWDLGVVSSSRAGMLLSCGEDGNVNLVDFTKAGDRGGFGSIEQAFCDQGEFWRAGLSLADITSVTREALAVNSVNSHRSAALFAYATDGGVLGFGNLS 397          
BLAST of Ggra1454.t1 vs. uniprot
Match: R7QKX8 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKX8_CHOCR)

HSP 1 Score: 246 bits (629), Expect = 2.480e-74
Identity = 167/429 (38.93%), Postives = 234/429 (54.55%), Query Frame = 0
Query:    1 MDGRRRTIPRSARRAPTKQ------VPQHLPSQSLAATAGNRYVPDFNPEARDPSLGLPLLANPVSQTV-----STRAPAISFTATTQTCVRWLPNTAEHAVALAGSGDGEQDA--LTFYGVTARQ-EVAFDIVRELPHKGKVNKICVTDEGQ-IFTASSQGSVYALSGSDPTKAEIRKVYDM-EKFGKKESISSVAYSSVGLIAA-GVHGSLMIVDVTTGK--ARGLQFDEVGFRDLISVD-ERGTEIITAG--CDVAVWDVR-----SGDRTDLMHPGKSVAT-CVCTDAGQPHFVMGGMRNGELVVWDRR-SDSIPLNRIGLHSGPIWDLGVVSSSRAGLLLSCGEDGHVRMVDFASAGDR-GGFGSMEQAYCDQGEFWRAQVSQQDIANLSR--ETMAVNSVNAHRNAALFAYATDAGVVAFGSL 397
            M+G RRTIPRSARR P +Q           P+      +  RY P F     +P+   P    P+   V     S   P +++     T VRWLP     A+A  G+GDG  DA  L+ Y V+ R  +V+  + R++ H GKV +I  +   + +F  SS GS+  LS      + +  +  M  +  + E ++ VA    G +AA G  G+ ++VDV+  +   R    D VGF D  +VD E G E+++AG  C+V VWD R      G+   L HP   VAT CV TD  QPHFV+GG RNGEL  WDRR ++  PLNR+ +H G +W+  VVSSS+ GLLLSCGED  V ++DFA+A  R    GS      + GEFWR+ ++Q D+ N+      + +N ++AH  A L+AYA+D+G VAFG L
Sbjct:    1 MEGIRRTIPRSARRTPARQDVSQFPATPRTPASQKTIFSPERYAPAFRSSQNEPAKIEPQALPPIRTGVEALSPSPSVPTLAYAPAPLTTVRWLPAPGRDAIAAVGTGDGAPDADFLSLYRVSTRGGDVSATVARDIDHPGKVLRIASSLSSETLFVGSSDGSIRTLSLDSWETSSLETLSVMPRRAARPELVTGVAPVVNGRVAALGGDGTFIVVDVSRCQEIGRAEMADPVGFFDGTAVDAEAGNEVVSAGAGCEVCVWDTRIIQTGRGNVQTLGHPTPGVATRCVTTDPAQPHFVIGGTRNGELCTWDRRGTEPFPLNRVAMHDGVVWETRVVSSSKPGLLLSCGEDSKVWLMDFAAAASRDSAMGS------ESGEFWRSMITQSDVRNVVGWDSALGINGIDAHPTADLYAYASDSGAVAFGCL 423          
BLAST of Ggra1454.t1 vs. uniprot
Match: A0A7S1EV04 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EV04_9RHOD)

HSP 1 Score: 105 bits (262), Expect = 2.590e-21
Identity = 90/248 (36.29%), Postives = 128/248 (51.61%), Query Frame = 0
Query:  171 FGKKESISSV-------AYSSVGLIAAGVHGSLMIVDV---------TTGKARGLQFDEVGFRDLISVDERGTEIITAGC---DVAVWDVRSGDR--TDLMHPGKSVATCVCTDAGQPHFVMGGMRNGELVVWDRR-------SDSIPLNRIGLHSGPIWDLGVVSSSRAGLLLSCGEDGHVRMVDFASAGDRGGFGSMEQAYCDQGEFWRAQVSQQDIANLSRETM--AVNSVNAHRNAALFAYATD 388
            F   ES+SSV       + +S  L + G  G++ I D+         TT +      + VG+   I+++   +++I AG     V V+DVR+ D   + L     +    V +D    HFV  G  NGEL+VWDRR       S+S+ L ++  HSGPIWD+ +VS+ R GLLLSC EDG V   DF +A     F S         EFW AQVS+ D+ ++  +T   AVN+++AH  A L AY TD
Sbjct:  194 FSSSESVSSVCSFNGISSSNSQRLGSTGSCGTVSIFDINQEQSLWSNTTDRNLRNTAESVGYLCSIALE---SDVIAAGGISGRVDVYDVRTNDSVVSSLYCGTHTRLRSVKSDESSSHFVFAGSNNGELIVWDRRYISSSTDSESM-LMKVQAHSGPIWDISLVSN-RPGLLLSCAEDGRVLSWDFGTASQS--FNSTATT-----EFWSAQVSESDV-HIVADTAPYAVNAIHAHPAAELVAYGTD 428          
BLAST of Ggra1454.t1 vs. uniprot
Match: I7LZH9 (Cytoplasmic dynein intermediate chain n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7LZH9_TETTS)

HSP 1 Score: 60.5 bits (145), Expect = 3.040e-6
Identity = 33/90 (36.67%), Postives = 49/90 (54.44%), Query Frame = 0
Query:  236 VAVWDVRSGDRTDLMHPGKSVATCVCTDAGQPHFVMGGMRNGELVVWDRRSDSIPLNRIGL---HSGPIWDLGVVSSSRAGLLLSCGEDG 322
            VA+W +    R +     +S  TCV  +  Q + V+GG+ NG++V+WD R+ S P+ R      HS PI+ L VV S  A  ++S   DG
Sbjct:  281 VALWSLSLKTRPEFYCFSQSQVTCVKYNPFQENLVLGGLYNGQIVLWDLRAKSTPIQRTTFTTGHSYPIYSLDVVGSVNAHNIISISNDG 370          
BLAST of Ggra1454.t1 vs. uniprot
Match: A0CYQ1 (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0CYQ1_PARTE)

HSP 1 Score: 59.7 bits (143), Expect = 5.280e-6
Identity = 31/93 (33.33%), Postives = 47/93 (50.54%), Query Frame = 0
Query:  236 VAVWDVRSGDRTDLMHPGKSVATCVCTDAGQPHFVMGGMRNGELVVWDRRSDSIPLNRIGLHSG----PIWDLGVVSSSRAGLLLSCGEDGHV 324
            V +W ++   R +      S  T  C     P+ V+GG+ NG++VVWD R+   P  R  L+SG    PI+ L +V S  A  ++S   DG +
Sbjct:  266 VLLWSLQLKSRPEFYCFASSPITSACFHPFSPNIVLGGLYNGQVVVWDLRAKHTPEKRSTLNSGGHSYPIYGLSIVGSQNANNIISASNDGRI 358          
BLAST of Ggra1454.t1 vs. uniprot
Match: A0A484DZZ2 (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZZ2_BRELC)

HSP 1 Score: 58.9 bits (141), Expect = 9.990e-6
Identity = 44/177 (24.86%), Postives = 77/177 (43.50%), Query Frame = 0
Query:  156 DPTKAEIRKVYDMEKFGKKESISSVAYSSVGLIAAGVHGSLMIVDVTTGKARGLQFDEVGFRDLISVDERGTEIITAGCDVAVWDVRSGDRTDLMHPGKSVATCVCTDAGQPHFVMGGMRNGELVVWDRRSDSIPLNRIGL----HSGPIWDLGVVSSSRAGLLLSCGEDGHVRMVD 328
            DP  +  R V D++       ++ VAYS+ G +           D     +R  Q+D +G    +++ +  +   T    V +W      R +      S  T  C +    H ++GG  +G++VVWD R+ S P+ +  L    H+ PI+ + V  +  +  L+S   DG V + D
Sbjct:  248 DPQWSTHRAVTDVDVSPFYPELTLVAYSARGFVE----------DEAKDGSRSSQWDTMGNSATVALTDVAS---TMEGVVLLWSTALPSRPEYRFTCHSQVTSACFNPFDRHIIIGGTYSGQIVVWDTRAKSAPVQKTPLSTLSHTHPIYAMAVAGTKTSYTLISASTDGRVCIWD 411          
The following BLAST results are available for this feature:
BLAST of Ggra1454.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3J0K02.710e-19467.92Nucleoporin Nup43 n=1 Tax=Gracilariopsis chorda Ta... [more]
R7QKX82.480e-7438.93Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1EV042.590e-2136.29Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
I7LZH93.040e-636.67Cytoplasmic dynein intermediate chain n=1 Tax=Tetr... [more]
A0CYQ15.280e-633.33Uncharacterized protein n=1 Tax=Paramecium tetraur... [more]
A0A484DZZ29.990e-624.86Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 243..283
e-value: 360.0
score: 0.9
coord: 287..328
e-value: 0.34
score: 20.0
coord: 161..200
e-value: 180.0
score: 2.8
coord: 116..153
e-value: 4.6
score: 12.8
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 71..394
e-value: 9.0E-31
score: 109.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availablePANTHERPTHR22652NUCLEOPORIN NUP43coord: 74..394
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 78..331

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:132751..133947 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1454.t1Ggra1454.t1Gracilaria gracilis GNS1m malemRNAtig00000844_pilon 132751..133947 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1454.t1 ID=Ggra1454.t1|Name=Ggra1454.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=399bp
MDGRRRTIPRSARRAPTKQVPQHLPSQSLAATAGNRYVPDFNPEARDPSL
GLPLLANPVSQTVSTRAPAISFTATTQTCVRWLPNTAEHAVALAGSGDGE
QDALTFYGVTARQEVAFDIVRELPHKGKVNKICVTDEGQIFTASSQGSVY
ALSGSDPTKAEIRKVYDMEKFGKKESISSVAYSSVGLIAAGVHGSLMIVD
VTTGKARGLQFDEVGFRDLISVDERGTEIITAGCDVAVWDVRSGDRTDLM
HPGKSVATCVCTDAGQPHFVMGGMRNGELVVWDRRSDSIPLNRIGLHSGP
IWDLGVVSSSRAGLLLSCGEDGHVRMVDFASAGDRGGFGSMEQAYCDQGE
FWRAQVSQQDIANLSRETMAVNSVNAHRNAALFAYATDAGVVAFGSLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf