Ggra1454.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1454.t1
Unique NameGgra1454.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length399
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:132751..133947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO33534
Preferred nameNUP43
PFAMsWD40
Max annot lvl33208|Metazoa
KEGG koko:K14305
KEGG TC1.l.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000793,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005694,GO:0005737,GO:0005829,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016032,GO:0031080,GO:0031503,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0098687
Evalue2.51e-10
EggNOG OGsKOG4714@1|root,KOG4714@2759|Eukaryota,38BWJ@33154|Opisthokonta,3BATR@33208|Metazoa
DescriptionNucleoporin
COG categoryY
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1454Ggra1454Gracilaria gracilis GNS1m malegenetig00000844_pilon 132751..133947 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1454.t1.start1Ggra1454.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 132751..132753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1454.t1.CDS1Ggra1454.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 132751..133947 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1454.t1.exon1Ggra1454.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 132751..133947 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1454.t1.stop1Ggra1454.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 133945..133947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1454.t1Ggra1454.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 132751..133947 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1454.t1 ID=Ggra1454.t1|Name=Ggra1454.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=399bp
MDGRRRTIPRSARRAPTKQVPQHLPSQSLAATAGNRYVPDFNPEARDPSL
GLPLLANPVSQTVSTRAPAISFTATTQTCVRWLPNTAEHAVALAGSGDGE
QDALTFYGVTARQEVAFDIVRELPHKGKVNKICVTDEGQIFTASSQGSVY
ALSGSDPTKAEIRKVYDMEKFGKKESISSVAYSSVGLIAAGVHGSLMIVD
VTTGKARGLQFDEVGFRDLISVDERGTEIITAGCDVAVWDVRSGDRTDLM
HPGKSVATCVCTDAGQPHFVMGGMRNGELVVWDRRSDSIPLNRIGLHSGP
IWDLGVVSSSRAGLLLSCGEDGHVRMVDFASAGDRGGFGSMEQAYCDQGE
FWRAQVSQQDIANLSRETMAVNSVNAHRNAALFAYATDAGVVAFGSLS*
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spliced messenger RNA

>Ggra1454.t1 ID=Ggra1454.t1|Name=Ggra1454.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000844_pilon:132751..133947+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGGGAGAAGGCGGACAATACCTCGTTCGGCACGAAGGGCTCCAAC
GAAACAGGTGCCCCAGCATCTTCCCTCCCAAAGTCTTGCTGCTACCGCAG
GAAATCGTTATGTGCCTGACTTCAACCCGGAAGCGAGAGACCCGTCTCTA
GGACTTCCTCTTCTTGCGAATCCGGTTTCCCAAACCGTTTCCACTCGTGC
CCCAGCCATTTCTTTCACAGCTACAACGCAGACTTGCGTTCGATGGTTAC
CAAATACGGCTGAACATGCAGTCGCATTGGCTGGTAGCGGAGATGGGGAA
CAAGATGCGCTTACTTTCTATGGCGTAACAGCCAGACAAGAAGTGGCTTT
TGACATAGTACGAGAACTGCCTCATAAAGGGAAGGTAAACAAAATCTGTG
TCACCGATGAAGGCCAAATCTTTACTGCTTCATCGCAAGGATCTGTTTAT
GCGTTGTCAGGATCTGACCCAACCAAAGCAGAGATACGCAAAGTTTATGA
CATGGAGAAATTTGGAAAGAAAGAAAGCATTTCATCGGTAGCATATTCAA
GCGTCGGTCTAATTGCGGCCGGAGTGCATGGAAGTTTGATGATAGTCGAT
GTCACTACAGGAAAAGCAAGAGGGTTGCAGTTTGATGAAGTCGGTTTTCG
TGACTTGATAAGTGTTGATGAGCGAGGGACTGAAATAATTACTGCGGGTT
GCGACGTGGCTGTATGGGACGTGCGAAGCGGTGACCGAACCGATCTAATG
CACCCTGGCAAGTCTGTGGCGACTTGTGTTTGCACAGATGCTGGCCAGCC
ACATTTTGTAATGGGCGGTATGCGAAATGGAGAGCTAGTTGTGTGGGATC
GCAGGTCGGACAGCATTCCGCTGAATCGCATTGGACTGCATTCCGGACCA
ATATGGGATTTGGGAGTAGTAAGCAGTTCGCGAGCTGGATTGCTTCTGTC
TTGTGGCGAAGACGGTCATGTTCGCATGGTAGACTTTGCCAGCGCGGGGG
ATCGCGGCGGATTTGGGAGTATGGAACAAGCGTATTGCGATCAGGGCGAA
TTCTGGCGCGCCCAAGTATCACAACAAGACATAGCGAATCTTTCTCGGGA
GACAATGGCAGTGAACAGCGTAAACGCGCATCGAAACGCAGCTTTGTTTG
CTTATGCTACCGATGCCGGCGTAGTAGCATTCGGCAGCTTGTCGTGA
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protein sequence of Ggra1454.t1

>Ggra1454.t1 ID=Ggra1454.t1|Name=Ggra1454.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=399bp
MDGRRRTIPRSARRAPTKQVPQHLPSQSLAATAGNRYVPDFNPEARDPSL
GLPLLANPVSQTVSTRAPAISFTATTQTCVRWLPNTAEHAVALAGSGDGE
QDALTFYGVTARQEVAFDIVRELPHKGKVNKICVTDEGQIFTASSQGSVY
ALSGSDPTKAEIRKVYDMEKFGKKESISSVAYSSVGLIAAGVHGSLMIVD
VTTGKARGLQFDEVGFRDLISVDERGTEIITAGCDVAVWDVRSGDRTDLM
HPGKSVATCVCTDAGQPHFVMGGMRNGELVVWDRRSDSIPLNRIGLHSGP
IWDLGVVSSSRAGLLLSCGEDGHVRMVDFASAGDRGGFGSMEQAYCDQGE
FWRAQVSQQDIANLSRETMAVNSVNAHRNAALFAYATDAGVVAFGSLS*
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mRNA from alignment at tig00000844_pilon:132751..133947+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1454.t1 ID=Ggra1454.t1|Name=Ggra1454.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000844_pilon:132751..133947+ (Gracilaria gracilis GNS1m male)
ATGGATGGGAGAAGGCGGACAATACCTCGTTCGGCACGAAGGGCTCCAAC
GAAACAGGTGCCCCAGCATCTTCCCTCCCAAAGTCTTGCTGCTACCGCAG
GAAATCGTTATGTGCCTGACTTCAACCCGGAAGCGAGAGACCCGTCTCTA
GGACTTCCTCTTCTTGCGAATCCGGTTTCCCAAACCGTTTCCACTCGTGC
CCCAGCCATTTCTTTCACAGCTACAACGCAGACTTGCGTTCGATGGTTAC
CAAATACGGCTGAACATGCAGTCGCATTGGCTGGTAGCGGAGATGGGGAA
CAAGATGCGCTTACTTTCTATGGCGTAACAGCCAGACAAGAAGTGGCTTT
TGACATAGTACGAGAACTGCCTCATAAAGGGAAGGTAAACAAAATCTGTG
TCACCGATGAAGGCCAAATCTTTACTGCTTCATCGCAAGGATCTGTTTAT
GCGTTGTCAGGATCTGACCCAACCAAAGCAGAGATACGCAAAGTTTATGA
CATGGAGAAATTTGGAAAGAAAGAAAGCATTTCATCGGTAGCATATTCAA
GCGTCGGTCTAATTGCGGCCGGAGTGCATGGAAGTTTGATGATAGTCGAT
GTCACTACAGGAAAAGCAAGAGGGTTGCAGTTTGATGAAGTCGGTTTTCG
TGACTTGATAAGTGTTGATGAGCGAGGGACTGAAATAATTACTGCGGGTT
GCGACGTGGCTGTATGGGACGTGCGAAGCGGTGACCGAACCGATCTAATG
CACCCTGGCAAGTCTGTGGCGACTTGTGTTTGCACAGATGCTGGCCAGCC
ACATTTTGTAATGGGCGGTATGCGAAATGGAGAGCTAGTTGTGTGGGATC
GCAGGTCGGACAGCATTCCGCTGAATCGCATTGGACTGCATTCCGGACCA
ATATGGGATTTGGGAGTAGTAAGCAGTTCGCGAGCTGGATTGCTTCTGTC
TTGTGGCGAAGACGGTCATGTTCGCATGGTAGACTTTGCCAGCGCGGGGG
ATCGCGGCGGATTTGGGAGTATGGAACAAGCGTATTGCGATCAGGGCGAA
TTCTGGCGCGCCCAAGTATCACAACAAGACATAGCGAATCTTTCTCGGGA
GACAATGGCAGTGAACAGCGTAAACGCGCATCGAAACGCAGCTTTGTTTG
CTTATGCTACCGATGCCGGCGTAGTAGCATTCGGCAGCTTGTCGTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:132751..133947+

>Ggra1454.t1 ID=Ggra1454.t1|Name=Ggra1454.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1197bp|location=Sequence derived from alignment at tig00000844_pilon:132751..133947+ (Gracilaria gracilis GNS1m male)
ATGGATGGGAGAAGGCGGACAATACCTCGTTCGGCACGAAGGGCTCCAAC
GAAACAGGTGCCCCAGCATCTTCCCTCCCAAAGTCTTGCTGCTACCGCAG
GAAATCGTTATGTGCCTGACTTCAACCCGGAAGCGAGAGACCCGTCTCTA
GGACTTCCTCTTCTTGCGAATCCGGTTTCCCAAACCGTTTCCACTCGTGC
CCCAGCCATTTCTTTCACAGCTACAACGCAGACTTGCGTTCGATGGTTAC
CAAATACGGCTGAACATGCAGTCGCATTGGCTGGTAGCGGAGATGGGGAA
CAAGATGCGCTTACTTTCTATGGCGTAACAGCCAGACAAGAAGTGGCTTT
TGACATAGTACGAGAACTGCCTCATAAAGGGAAGGTAAACAAAATCTGTG
TCACCGATGAAGGCCAAATCTTTACTGCTTCATCGCAAGGATCTGTTTAT
GCGTTGTCAGGATCTGACCCAACCAAAGCAGAGATACGCAAAGTTTATGA
CATGGAGAAATTTGGAAAGAAAGAAAGCATTTCATCGGTAGCATATTCAA
GCGTCGGTCTAATTGCGGCCGGAGTGCATGGAAGTTTGATGATAGTCGAT
GTCACTACAGGAAAAGCAAGAGGGTTGCAGTTTGATGAAGTCGGTTTTCG
TGACTTGATAAGTGTTGATGAGCGAGGGACTGAAATAATTACTGCGGGTT
GCGACGTGGCTGTATGGGACGTGCGAAGCGGTGACCGAACCGATCTAATG
CACCCTGGCAAGTCTGTGGCGACTTGTGTTTGCACAGATGCTGGCCAGCC
ACATTTTGTAATGGGCGGTATGCGAAATGGAGAGCTAGTTGTGTGGGATC
GCAGGTCGGACAGCATTCCGCTGAATCGCATTGGACTGCATTCCGGACCA
ATATGGGATTTGGGAGTAGTAAGCAGTTCGCGAGCTGGATTGCTTCTGTC
TTGTGGCGAAGACGGTCATGTTCGCATGGTAGACTTTGCCAGCGCGGGGG
ATCGCGGCGGATTTGGGAGTATGGAACAAGCGTATTGCGATCAGGGCGAA
TTCTGGCGCGCCCAAGTATCACAACAAGACATAGCGAATCTTTCTCGGGA
GACAATGGCAGTGAACAGCGTAAACGCGCATCGAAACGCAGCTTTGTTTG
CTTATGCTACCGATGCCGGCGTAGTAGCATTCGGCAGCTTGTCGTGA
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