Ggra1446.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1446.t1
Unique NameGgra1446.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length153
Homology
BLAST of Ggra1446.t1 vs. uniprot
Match: R7QK48 (Eukaryotic translation initiation factor 5A n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK48_CHOCR)

HSP 1 Score: 257 bits (656), Expect = 5.990e-86
Identity = 129/153 (84.31%), Postives = 145/153 (94.77%), Query Frame = 0
Query:    1 MSEHDSGSSGASKTIPVQAGSLKKGAHVVIKGFPCKIVDYSTSKTGKHGHAKANIVGVDIFTGKKYEDISPSSHNMMSPIVTRKDYQVIDIDDEGFVTIMDDKNETRSDLRLD-EDDDIHKKVKTEFEAEKDLLVTVLSAMEQEKIIAVKETQ 152
            MSEHDSGSSGAS T+PVQAG+LKKG+HVVIKGFPCKI+DYSTSKTGKHGHAKANIVG+DIFTGKKYEDISPSSHNMMSP+VTRKD+Q+IDID+EG+VTIMDDKNETRSDLRLD E+DDIHKK K +FE  KDLL+TVLSA++ EK+IAVKE Q
Sbjct:    1 MSEHDSGSSGASNTVPVQAGALKKGSHVVIKGFPCKIIDYSTSKTGKHGHAKANIVGIDIFTGKKYEDISPSSHNMMSPVVTRKDFQLIDIDEEGYVTIMDDKNETRSDLRLDFENDDIHKKAKEDFEEGKDLLLTVLSALDTEKVIAVKELQ 153          
BLAST of Ggra1446.t1 vs. uniprot
Match: A0A2V3IEI9 (Eukaryotic translation initiation factor 5A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEI9_9FLOR)

HSP 1 Score: 241 bits (614), Expect = 1.510e-79
Identity = 125/153 (81.70%), Postives = 140/153 (91.50%), Query Frame = 0
Query:    1 MSEHDSGSSGASKTIPVQAGSLKKGAHVVIKGFPCKIVDYSTSKTGKHGHAKANIVGVDIFTGKKYEDISPSSHNMMSPIVTRKDYQVIDIDDEGFVTIMDDKNETRSDLRL-DEDDDIHKKVKTEFEAEKDLLVTVLSAMEQEKIIAVKETQ 152
            MSEHDSGSSGAS++IPVQAG+LKKG+HVVIKGFPCKIV+YSTSKTGKHGHAKANIVGVDIFTG+KYEDISPSSHNMMSPIV RKD+Q+IDID+EGFVT+MDDK+ETRSDLR+  E +DIH K K EF+ +K LLVTVLSAM  EKIIA KE Q
Sbjct:    1 MSEHDSGSSGASQSIPVQAGALKKGSHVVIKGFPCKIVEYSTSKTGKHGHAKANIVGVDIFTGRKYEDISPSSHNMMSPIVNRKDFQLIDIDEEGFVTLMDDKHETRSDLRIFPETEDIHAKCKEEFDDDKSLLVTVLSAMGTEKIIAYKELQ 153          
BLAST of Ggra1446.t1 vs. uniprot
Match: A0A5J4YTQ6 (Eukaryotic translation initiation factor 5A n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTQ6_PORPP)

HSP 1 Score: 227 bits (579), Expect = 4.090e-74
Identity = 110/144 (76.39%), Postives = 128/144 (88.89%), Query Frame = 0
Query:    7 GSSGASKTIPVQAGSLKKGAHVVIKGFPCKIVDYSTSKTGKHGHAKANIVGVDIFTGKKYEDISPSSHNMMSPIVTRKDYQVIDIDDEGFVTIMDDKNETRSDLRLDEDDDIHKKVKTEFEAEKDLLVTVLSAMEQEKIIAVKE 150
            G SGAS T+P+QAG+LKKG+ VV+KGFPCKIVDYSTSKTGKHGHAKANI G+DIFT KKYED+ P+SHNM  PIV RKDYQ+ID+D+E FV++MDDKNETR DLRLDE DD+HKK+  +F+AEKDL+VTVLSAM  EKIIAVKE
Sbjct:   14 GGSGASDTVPIQAGALKKGSFVVLKGFPCKIVDYSTSKTGKHGHAKANITGIDIFTNKKYEDVCPTSHNMQQPIVNRKDYQLIDVDEENFVSLMDDKNETREDLRLDEQDDVHKKISEDFKAEKDLVVTVLSAMGTEKIIAVKE 157          
BLAST of Ggra1446.t1 vs. uniprot
Match: A0A1X6PCW2 (Eukaryotic translation initiation factor 5A n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PCW2_PORUM)

HSP 1 Score: 219 bits (559), Expect = 3.490e-71
Identity = 107/149 (71.81%), Postives = 132/149 (88.59%), Query Frame = 0
Query:    5 DSGSSGASKTIPVQAGSLKKGAHVVIKGFPCKIVDYSTSKTGKHGHAKANIVGVDIFTGKKYEDISPSSHNMMSPIVTRKDYQVIDIDDEGFVTIMDDKNETRSDLRLDED-DDIHKKVKTEFEAEKDLLVTVLSAMEQEKIIAVKETQ 152
            D+  SGAS  IP+QAG+LKKG+HVV+KGFPCKIVDYSTSKTGKHGHAKANI G+DIFT +KYEDISP+SHNM+ P+V RKDYQ++DIDDE ++T+MDDKN+TR+DL+LD D DD+HKK+K EF+  KDL+VTVL+AM+ EK+IA KE Q
Sbjct:    4 DASGSGASDCIPIQAGALKKGSHVVLKGFPCKIVDYSTSKTGKHGHAKANITGIDIFTQRKYEDISPTSHNMLQPLVNRKDYQLVDIDDEAYLTLMDDKNDTRADLKLDLDGDDVHKKIKEEFDNGKDLVVTVLAAMKTEKVIAWKELQ 152          
BLAST of Ggra1446.t1 vs. uniprot
Match: A0A7S0G3H6 (Eukaryotic translation initiation factor 5A n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G3H6_9RHOD)

HSP 1 Score: 219 bits (559), Expect = 3.980e-71
Identity = 110/145 (75.86%), Postives = 131/145 (90.34%), Query Frame = 0
Query:    7 GSSGASKTIPVQAGSLKKGAHVVIKGFPCKIVDYSTSKTGKHGHAKANIVGVDIFTGKKYEDISPSSHNMMSPIVTRKDYQVIDIDDEGFVTIMDDK-NETRSDLRLDED-DDIHKKVKTEFEAEKDLLVTVLSAMEQEKIIAVK 149
            G SG+S TIPVQAG+LKKGAHVVIKGFPCKIVDYSTSKTGKHGHAKANI G+DIFTGKKYEDISP+SHNM+ PIV+R+D+Q+IDIDDEGF+T+MDDK NETRSDLR++ D +++HKK+K EF+  KDL VTVLSAM+ EK++  K
Sbjct:    9 GDSGSSDTIPVQAGALKKGAHVVIKGFPCKIVDYSTSKTGKHGHAKANITGIDIFTGKKYEDISPTSHNMLQPIVSRRDFQLIDIDDEGFITVMDDKTNETRSDLRIETDKEEVHKKLKEEFDEGKDLAVTVLSAMKIEKVVTYK 153          
BLAST of Ggra1446.t1 vs. uniprot
Match: A0A7S1T553 (Eukaryotic translation initiation factor 5A n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T553_9RHOD)

HSP 1 Score: 214 bits (544), Expect = 7.170e-69
Identity = 102/148 (68.92%), Postives = 129/148 (87.16%), Query Frame = 0
Query:    3 EHDSGSSGASKTIPVQAGSLKKGAHVVIKGFPCKIVDYSTSKTGKHGHAKANIVGVDIFTGKKYEDISPSSHNMMSPIVTRKDYQVIDIDDEGFVTIMDDKNETRSDLRLDEDDDIHKKVKTEFEAEKDLLVTVLSAMEQEKIIAVKE 150
            EH +G SGAS T+P+QAG+LKK A+ V+KGFPCKIVDYSTSKTGKHGHAKANI G+DIF+GKKYED+ P+SHNMM PIVTR D Q++DID+EGFV++M+DK+E RSDL+LD+ D+ H+K++T F+  K+L+VTVL AM  EKIIA+KE
Sbjct:    4 EHAAGDSGASDTVPIQAGALKKNAYCVLKGFPCKIVDYSTSKTGKHGHAKANITGIDIFSGKKYEDVCPTSHNMMQPIVTRNDLQLVDIDEEGFVSLMNDKSEMRSDLKLDDSDETHQKIRTAFDEGKELMVTVLGAMGTEKIIALKE 151          
BLAST of Ggra1446.t1 vs. uniprot
Match: M2Y544 (Eukaryotic translation initiation factor 5A n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y544_GALSU)

HSP 1 Score: 205 bits (522), Expect = 1.660e-65
Identity = 100/142 (70.42%), Postives = 124/142 (87.32%), Query Frame = 0
Query:   10 GASKTIPVQAGSLKKGAHVVIKGFPCKIVDYSTSKTGKHGHAKANIVGVDIFTGKKYEDISPSSHNMMSPIVTRKDYQVIDIDDEGFVTIMDDKNETRSDLRLD-EDDDIHKKVKTEFEAEKDLLVTVLSAMEQEKIIAVKE 150
            GA++  P+QAGS+KK + VV+KGFPCK+VD STSKTGKHGHAKANIVGVDIFTGKKYE++ P+SHN++ P+V RKDYQ++DI+D+GFV +MD+ NETRSDL+LD E DD+HKK+K EF   K+LLVTVLSAM+ EKIIA KE
Sbjct:   11 GAAEATPIQAGSVKKNSFVVLKGFPCKVVDISTSKTGKHGHAKANIVGVDIFTGKKYEEMCPTSHNILQPVVNRKDYQLVDIEDDGFVVLMDENNETRSDLKLDLESDDVHKKIKQEFNEGKELLVTVLSAMKTEKIIASKE 152          
BLAST of Ggra1446.t1 vs. uniprot
Match: A0A7S0MKK1 (Eukaryotic translation initiation factor 5A n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MKK1_9CRYP)

HSP 1 Score: 193 bits (491), Expect = 9.240e-61
Identity = 90/149 (60.40%), Postives = 127/149 (85.23%), Query Frame = 0
Query:    3 EHDSGSSGASKTIPVQAGSLKKGAHVVIKGFPCKIVDYSTSKTGKHGHAKANIVGVDIFTGKKYEDISPSSHNMMSPIVTRKDYQVIDIDDEGFVTIMDDKNETRSDLRLD-EDDDIHKKVKTEFEAEKDLLVTVLSAMEQEKIIAVKE 150
            + +SG +GAS+TIPVQAGS+KKG+H+V+KG PCK+++ STSKTGKHGHAKA+I G+DIFTGKKY+DISP+SHNMM P+V RK+YQ+++I ++ F+T+MDD+   R DL +D  +DD HKK+K +F++ K+L++TVL  M++EKIIA +E
Sbjct:    6 DFNSGDAGASETIPVQAGSVKKGSHIVLKGCPCKVIEVSTSKTGKHGHAKASITGIDIFTGKKYQDISPTSHNMMQPVVNRKEYQLVEIAEDSFLTLMDDEGNIREDLSIDINNDDTHKKIKGDFDSNKNLMLTVLKCMQKEKIIASRE 154          
BLAST of Ggra1446.t1 vs. uniprot
Match: A0A7J7IKU8 (Eukaryotic translation initiation factor 5A n=2 Tax=Cyanidiaceae TaxID=265316 RepID=A0A7J7IKU8_9RHOD)

HSP 1 Score: 191 bits (485), Expect = 8.320e-60
Identity = 97/157 (61.78%), Postives = 123/157 (78.34%), Query Frame = 0
Query:    1 MSEHD------SGSSGASKTIPVQAGSLKKGAHVVIKGFPCKIVDYSTSKTGKHGHAKANIVGVDIFTGKKYEDISPSSHNMMSPIVTRKDYQVIDIDDEGFVTIMDDKNETRSDLRLDEDDD-IHKKVKTEFEAEKDLLVTVLSAMEQEKIIAVKE 150
            M+EH       +G +GAS T+P+QAGS+KKG ++V+KG PCK VD STSKTGKHGHAKANIVG+DIFTGKKYED++P+SH M  P+V R +YQ+IDID E F ++MDDK ETR DL+LD D+D +H K+K +F+A K L V VL AM+QEKI+  KE
Sbjct:    1 MAEHHDLEVLATGDAGASDTVPIQAGSVKKGVYIVLKGQPCKCVDVSTSKTGKHGHAKANIVGLDIFTGKKYEDVAPTSHTMYQPVVVRSEYQLIDIDAENFCSLMDDKGETREDLKLDPDNDPVHAKIKEDFDAGKHLTVVVLKAMKQEKIMQSKE 157          
BLAST of Ggra1446.t1 vs. uniprot
Match: J7GAC3 (Eukaryotic translation initiation factor 5A n=1 Tax=Chroomonas mesostigmatica CCMP1168 TaxID=1195612 RepID=J7GAC3_9CRYP)

HSP 1 Score: 189 bits (481), Expect = 3.070e-59
Identity = 92/151 (60.93%), Postives = 127/151 (84.11%), Query Frame = 0
Query:    3 EHDSGSSGASKTIPVQAGSLKKGAHVVIKGFPCKIVDYSTSKTGKHGHAKANIVGVDIFTGKKYEDISPSSHNMMSPIVTRKDYQVIDIDDEGFVTIMDDKNETRSDLRLDEDDDI-HKKVKTEFEAEKDLLVTVLSAMEQEKIIAVKETQ 152
            +  SG +GAS+TIP+QAGS+KKG HVVIKG PCK++D +TSKTGKHGHAKA+I GVDIFTGKKY+DISP+SHN+M PIV RKDYQ+I+I ++GF+T+MD++   R DL LD+D+++ +  +K +F+A K+L VT+L +M++EKII+ KE +
Sbjct:    6 DFQSGDAGASETIPIQAGSVKKGIHVVIKGNPCKVIDITTSKTGKHGHAKASITGVDIFTGKKYQDISPTSHNIMQPIVNRKDYQLIEIAEDGFMTLMDEEGLIREDLALDDDNELLYTSIKKDFKANKNLNVTILKSMQKEKIISYKEIE 156          
The following BLAST results are available for this feature:
BLAST of Ggra1446.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QK485.990e-8684.31Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A2V3IEI91.510e-7981.70Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A5J4YTQ64.090e-7476.39Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A1X6PCW23.490e-7171.81Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A7S0G3H63.980e-7175.86Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A7S1T5537.170e-6968.92Eukaryotic translation initiation factor 5A n=1 Ta... [more]
M2Y5441.660e-6570.42Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A7S0MKK19.240e-6160.40Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A7J7IKU88.320e-6061.78Eukaryotic translation initiation factor 5A n=2 Ta... [more]
J7GAC33.070e-5960.93Eukaryotic translation initiation factor 5A n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020189Translation elongation factor, IF5A C-terminalSMARTSM01376eIF_5a_2coord: 80..149
e-value: 2.1E-28
score: 110.4
IPR020189Translation elongation factor, IF5A C-terminalPFAMPF01287eIF-5acoord: 80..149
e-value: 2.2E-23
score: 82.1
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 1..79
e-value: 5.8E-37
score: 127.4
IPR001884Translation elongation factor IF5A-likeTIGRFAMTIGR00037TIGR00037coord: 12..149
e-value: 2.7E-40
score: 135.2
IPR001884Translation elongation factor IF5A-likePIRSFPIRSF003025Transl_init_eIF5Acoord: 1..152
e-value: 1.6E-63
score: 210.8
IPR001884Translation elongation factor IF5A-likePANTHERPTHR11673TRANSLATION INITIATION FACTOR 5A FAMILY MEMBERcoord: 5..150
NoneNo IPR availableGENE3D2.40.50.140coord: 81..152
e-value: 3.2E-25
score: 90.0
NoneNo IPR availableCDDcd04468S1_eIF5Acoord: 81..150
e-value: 3.99441E-27
score: 94.5264
IPR019769Translation elongation factor, IF5A, hypusine sitePROSITEPS00302IF5A_HYPUSINEcoord: 45..52
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 81..150
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 10..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:112258..113162 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1446.t1Ggra1446.t1Gracilaria gracilis GNS1m malemRNAtig00000844_pilon 112258..113162 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1446.t1 ID=Ggra1446.t1|Name=Ggra1446.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=153bp
MSEHDSGSSGASKTIPVQAGSLKKGAHVVIKGFPCKIVDYSTSKTGKHGH
AKANIVGVDIFTGKKYEDISPSSHNMMSPIVTRKDYQVIDIDDEGFVTIM
DDKNETRSDLRLDEDDDIHKKVKTEFEAEKDLLVTVLSAMEQEKIIAVKE
TQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020189Transl_elong_IF5A_C
IPR014722Rib_L2_dom2
IPR001884IF5A-like
IPR019769Trans_elong_IF5A_hypusine_site
IPR012340NA-bd_OB-fold
IPR008991Translation_prot_SH3-like_sf