Ggra1446.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1446.t1
Unique NameGgra1446.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length153
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:112258..113162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707494.1
Preferred nameEIF5A2
PFAMsEFP_N,eIF-5a
Max annot lvl2759|Eukaryota
KEGG koko:K03263
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0008360,GO:0009058,GO:0009059,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010564,GO:0010604,GO:0010628,GO:0019222,GO:0019538,GO:0022603,GO:0022604,GO:0031344,GO:0032465,GO:0032467,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0045787,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051302,GO:0051726,GO:0051781,GO:0060255,GO:0060491,GO:0065007,GO:0065008,GO:0071704,GO:0090068,GO:0090342,GO:0090343,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue1.43e-66
EggNOG OGsCOG0231@1|root,KOG3271@2759|Eukaryota
Descriptioneukaryotic translation initiation factor
COG categoryJ
BRITEko00000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1446Ggra1446Gracilaria gracilis GNS1m malegenetig00000844_pilon 112258..113162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1446.t1Ggra1446.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 112258..113162 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1446.t1.start1Ggra1446.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 112258..112260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1446.t1.CDS1Ggra1446.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 112258..112315 +
Ggra1446.t1.CDS2Ggra1446.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 112762..113162 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1446.t1.exon1Ggra1446.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 112258..112315 +
Ggra1446.t1.exon2Ggra1446.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 112762..113162 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1446.t1.intron1Ggra1446.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 112316..112761 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1446.t1.stop1Ggra1446.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 113160..113162 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1446.t1 ID=Ggra1446.t1|Name=Ggra1446.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=153bp
MSEHDSGSSGASKTIPVQAGSLKKGAHVVIKGFPCKIVDYSTSKTGKHGH
AKANIVGVDIFTGKKYEDISPSSHNMMSPIVTRKDYQVIDIDDEGFVTIM
DDKNETRSDLRLDEDDDIHKKVKTEFEAEKDLLVTVLSAMEQEKIIAVKE
TQ*
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spliced messenger RNA

>Ggra1446.t1 ID=Ggra1446.t1|Name=Ggra1446.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=459bp|location=Sequence derived from alignment at tig00000844_pilon:112258..113162+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGAGCATGATTCCGGGTCATCCGGCGCATCCAAAACTATCCCCGT
CCAAGCTGGTTCGTTAAAGAAGGGGGCACACGTTGTTATCAAAGGATTCC
CGTGCAAGATCGTTGACTACTCCACCTCGAAGACCGGAAAGCACGGTCAT
GCTAAGGCTAATATTGTCGGTGTGGATATCTTCACCGGGAAGAAGTACGA
GGATATCTCTCCTTCGTCTCACAACATGATGTCTCCTATCGTGACTCGAA
AGGACTACCAGGTAATAGACATTGATGACGAAGGCTTTGTGACTATAATG
GACGACAAGAACGAAACGCGCTCTGATCTCCGTTTAGACGAGGATGATGA
TATTCATAAGAAGGTCAAGACTGAATTCGAAGCTGAGAAGGACCTGCTGG
TGACTGTCCTCTCTGCTATGGAGCAGGAGAAGATTATCGCAGTCAAAGAG
ACTCAGTAA
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protein sequence of Ggra1446.t1

>Ggra1446.t1 ID=Ggra1446.t1|Name=Ggra1446.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=153bp
MSEHDSGSSGASKTIPVQAGSLKKGAHVVIKGFPCKIVDYSTSKTGKHGH
AKANIVGVDIFTGKKYEDISPSSHNMMSPIVTRKDYQVIDIDDEGFVTIM
DDKNETRSDLRLDEDDDIHKKVKTEFEAEKDLLVTVLSAMEQEKIIAVKE
TQ*
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mRNA from alignment at tig00000844_pilon:112258..113162+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1446.t1 ID=Ggra1446.t1|Name=Ggra1446.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=905bp|location=Sequence derived from alignment at tig00000844_pilon:112258..113162+ (Gracilaria gracilis GNS1m male)
ATGTCTGAGCATGATTCCGGGTCATCCGGCGCATCCAAAACTATCCCCGT
CCAAGCTGGTAAGTTTAGAATTCATCGTAAATGTCTTCTCAAACCAAAAC
ATGATTTCGCAATTCACAGTCGCTGCGGCTAGGGTGAAGACCGTCAAGGC
GGCAATCAGGACATGCTAAATCAACTTTTGAGCATAACATACGCTCTTTG
TTGTTGGTGCTTACCGAGCTACTCTCGTGTACAGGCATGCTCTAAGTCGC
CTCCACGTTCACCTATCATGGAGATATGGAGAGGAGCTGGCCTCCAAGAA
GTCATTGCGACAACCATTGACGTAGAGCGACAAGTTCTAGATCCACACCA
ATGTTGCGCATGCCGCAAGTGAAATAGTTTGTTGTCTAGATTGTGGTTGC
TAACCGTTATCGTTTTGCTTGCGTACCTCTCTTTGCTGTGACAATTTGCC
TATCGAACGCTTCGTCATTCAAACGACGTTATTTTGCTTCGGTCAACGAA
ACAGGTTCGTTAAAGAAGGGGGCACACGTTGTTATCAAAGGATTCCCGTG
CAAGATCGTTGACTACTCCACCTCGAAGACCGGAAAGCACGGTCATGCTA
AGGCTAATATTGTCGGTGTGGATATCTTCACCGGGAAGAAGTACGAGGAT
ATCTCTCCTTCGTCTCACAACATGATGTCTCCTATCGTGACTCGAAAGGA
CTACCAGGTAATAGACATTGATGACGAAGGCTTTGTGACTATAATGGACG
ACAAGAACGAAACGCGCTCTGATCTCCGTTTAGACGAGGATGATGATATT
CATAAGAAGGTCAAGACTGAATTCGAAGCTGAGAAGGACCTGCTGGTGAC
TGTCCTCTCTGCTATGGAGCAGGAGAAGATTATCGCAGTCAAAGAGACTC
AGTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:112258..113162+

>Ggra1446.t1 ID=Ggra1446.t1|Name=Ggra1446.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=459bp|location=Sequence derived from alignment at tig00000844_pilon:112258..113162+ (Gracilaria gracilis GNS1m male)
ATGTCTGAGCATGATTCCGGGTCATCCGGCGCATCCAAAACTATCCCCGT
CCAAGCTGGTTCGTTAAAGAAGGGGGCACACGTTGTTATCAAAGGATTCC
CGTGCAAGATCGTTGACTACTCCACCTCGAAGACCGGAAAGCACGGTCAT
GCTAAGGCTAATATTGTCGGTGTGGATATCTTCACCGGGAAGAAGTACGA
GGATATCTCTCCTTCGTCTCACAACATGATGTCTCCTATCGTGACTCGAA
AGGACTACCAGGTAATAGACATTGATGACGAAGGCTTTGTGACTATAATG
GACGACAAGAACGAAACGCGCTCTGATCTCCGTTTAGACGAGGATGATGA
TATTCATAAGAAGGTCAAGACTGAATTCGAAGCTGAGAAGGACCTGCTGG
TGACTGTCCTCTCTGCTATGGAGCAGGAGAAGATTATCGCAGTCAAAGAG
ACTCAGTAA
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