Ggra1442.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1442.t1
Unique NameGgra1442.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length640
Homology
BLAST of Ggra1442.t1 vs. uniprot
Match: A0A2V3IEJ4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEJ4_9FLOR)

HSP 1 Score: 772 bits (1993), Expect = 1.300e-273
Identity = 384/640 (60.00%), Postives = 482/640 (75.31%), Query Frame = 0
Query:    1 MPSVRQPPTSKRRRSSEKNGRRFSVKDSRKQPILPTSHPVSRKPSYSSNVVRILAVAAVALLFFSASSMFRRVHRARQLIAPHYAPNDVVRGAEAHHDQPQVKLETDDNDAAMKDTEHKGEEPPVENADTD-SPPAADAAHVQSDTEHHEQE---HKPAEGSSETVRHEEHEDPVSMEDPVENIEWYTRSDYMDGTRPMCRVSKPYLLSNGTILVPAWMSNYEKLLDRCGLGKYGFYP-VTGPEGLEKVDMVDADFALTIHPERFQEPTHVPTVYLTEHILKASYLFDVFGGKAKVADGVTEHHCYTTSSESKCEEPRPIRAAMKPAIFVPHRIENAPSSSWPRKYVEMFGRAHGHGQGVLHLNSSSLLIQEHEGQSENVFGTRFRTIMITPGMFRHLPDSGLSQASIFSTKNDIEKSPKPKGSGACSVTIGIANGKDTTSHGMEGASDLKDKIEELGKYAMPEASIEVKTIDLGPEVDFDTHVKEMQTLDLYVAGSGDDMSSIGFLRQQSTAVELMPFALQPVAHKNLARILGIHYESFRSKPHDDDFKRCIDGEIFSLRKRGKLDLTGKPEWFEPLMKAWDDAVRQFALAGSSDFDIISADKTVNNYHSRACALKQRIEIAIDDIARKVINTVKESCS 635
            MPSVRQPPTSKRRRSSEKNGRRFSVKDSRKQPILPT H  SRK + +   VRI+AVAA+A+L  S SSM RR  R+R   + +  P+   +G + +      K E+D  D   +      ++    +  +D S P+AD  + ++D E  +     H   E S++     E +    ME   E IEWY+R DYM+G+RP+CR+SKPY+LSNGTIL+P W+S++EK+LDRCGLG +GFY   TGP+GL   + +DAD  LT+HPERFQEPTHVP+VYLTEHILK+SYLF VFGG  +  DG+ EHHCYTT+SE+KC+E RP    +KPAIFVP RIE AP   W RKYVE+ G AHG+G G+ HLN+SSLLI+ H+GQ E++ GTRFR++M+TPGMFRHLPD+GL  +  FS K  I K  + K SG CS+TIGIA GK+ + HG+EG SDLKDKIEELGKYA+PE S+EVK+ID+GP++ FD HVK+MQ LD+Y+AGSGDDMSSIGFL  Q+++ ELMPFA +P+ HKNLARILG+ Y SF SKP D DFKRCIDGEIFSLRKRG+L L+ KP+W+ PLMKAW+DAV+ +AL+GSSDFDII A+K VNNYHSRACALKQR+E+  D+IARK++  VKE C+
Sbjct:    1 MPSVRQPPTSKRRRSSEKNGRRFSVKDSRKQPILPTFHTGSRKSNLTFTFVRIMAVAAMAILIISVSSMIRRAARSRNFTSRYIVPSGS-KGDKGNEQTEIPKAESDGTDGNDQAKSVSSDDDVKTDVTSDASAPSADETNTKADEEGQDNVQSGHASLENSNDAGESSEQKKVPYMERASEYIEWYSRDDYMEGSRPICRISKPYVLSNGTILLPDWLSSHEKVLDRCGLGNHGFYSGSTGPQGLSTQNEIDADLVLTVHPERFQEPTHVPSVYLTEHILKSSYLFGVFGGSVRSVDGIGEHHCYTTASETKCDESRPAPDQLKPAIFVPTRIEQAPEGCWSRKYVELLGDAHGNGNGIRHLNTSSLLIKSHKGQIEDLMGTRFRSVMMTPGMFRHLPDNGLKMSRFFSMKTGIHKELESKSSGKCSITIGIATGKEGSPHGIEGGSDLKDKIEELGKYALPEVSLEVKSIDVGPDISFDDHVKQMQILDMYIAGSGDDMSSIGFLHSQASSFELMPFASKPLVHKNLARILGLQYMSFSSKPQDGDFKRCIDGEIFSLRKRGQLPLSEKPDWYAPLMKAWNDAVKDYALSGSSDFDIIGAEKPVNNYHSRACALKQRVEVETDEIARKLVQAVKEKCN 639          
BLAST of Ggra1442.t1 vs. uniprot
Match: R7QJ50 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ50_CHOCR)

HSP 1 Score: 497 bits (1280), Expect = 6.850e-169
Identity = 235/423 (55.56%), Postives = 315/423 (74.47%), Query Frame = 0
Query:  215 MSNYEKLLDRCGLGKYGFYPVT-GPEGLEKVDMVDADFALTIHPERFQEPTHVPTVYLTEHILKASYLFDVFGGKAKVADGVTEHHCYTTSSESKCEEPRPIRAAMKPAIFVPHRIENAPSSSWPRKYVEMFGRAHGHGQGVLHLNSSSLLIQEHEGQSENVFGTRFRTIMITPGMFRHLPDSGLSQASIFSTKNDIEKSPKPKG-SGACSVTIGIANGKDTTSHGMEGASDLKDKIEELGKYAMPEASIEVKTIDLGPEVDFDTHVKEMQTLDLYVAGSGDDMSSIGFLRQQSTAVELMPFALQPVAHKNLARILGIHYESFRSKPHDDDFKRCIDGEIFSLRKRGKLDLTGKPEWFEPLMKAWDDAVRQFALAGSSDFDIISADKTVNNYHSRACALKQRIEIAIDDIARKVINTVKESCS 635
            M +YEKLL RCGLG + +Y    GPEGL  +  V ADF LTIHPERFQEPTHV +VYLTEHILK+SYLFDVFGG A+  + V EHHCYT+  +S C  PRP+   +KPAIFVP RIEN P++ W ++ ++M G+AHGHGQ ++HLN+S++L++EH+G+ EN+ GT FR+IM T GMFRHLP +GL  ++++S KN I+KSPK +  +GAC++TIGIA+  D    G++G  DL++KIE + K A+P ++IE KTI          H+KEMQ LD++V GSGD+MSS+GFLR +S A+ELMPF ++P  H+++AR+LGI Y + R KP D  FK C++GEIF+LRK+G L  T  P+W EP +KAWD AV +F L+GSS FD+++A + VNNY++R CA KQ IE+AIDD ARK+    KE C+
Sbjct:    1 MRDYEKLLKRCGLGTHSYYSSQKGPEGLASIQDVGADFVLTIHPERFQEPTHVASVYLTEHILKSSYLFDVFGGDAQFVEEVKEHHCYTSEKDSTCALPRPVHTILKPAIFVPKRIENGPNALWSKQLLDMLGKAHGHGQDLIHLNASTVLLKEHKGELENLIGTGFRSIMTTDGMFRHLPTNGLQHSNMYSLKNRIDKSPKEREVNGACAITIGIASSHDRDG-GIQGVDDLREKIEAVSKLAIPGSAIEAKTIIFSSVGSLQDHIKEMQQLDIFVGGSGDEMSSMGFLRSKSVAIELMPFGIKPNTHESMARVLGIGYNNIRGKPQDS-FKNCLEGEIFNLRKKGTLSYTELPDWEEPTVKAWDAAVGEFVLSGSSAFDVLTAQRPVNNYYARVCAQKQNIEVAIDDTARKIAAMAKEKCT 421          
BLAST of Ggra1442.t1 vs. uniprot
Match: A0A1X6NL24 (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NL24_PORUM)

HSP 1 Score: 105 bits (263), Expect = 4.170e-20
Identity = 112/484 (23.14%), Postives = 188/484 (38.84%), Query Frame = 0
Query:  185 RSDYMDGTRPMCRVSKPYLLSNGTILVPAWMSNYEKLLDRCGLG---KYGFYPVTGPEGLEKVDMV-DADFALTIHPERFQEPTHVPTVYLTEHILKASYLFDVFGGKAK-----------------------VADGVTEHHCYTTSSESKCEEPRPIRAAMKPAIFVPHRIENAPSSSWPRKYVEMFGRAHGHGQGVLHLNSSSLLIQEHEGQSENVFGTRFRTIMITPGMFRHLPDSGLSQASIFSTKNDIEKSPK----------PKGSGACSVTI--GIANGKD-TTSHGMEGASDLKDKIEELGKYAMPEASIEVKTIDLGPEVDFDTHVKEMQTLDLYVAGSGDDMSSIGFLRQQSTAVELMPFALQPVAHKNLARILGIHYESFRSKPHDDDFKRCIDGEIFSLRKRGKLDLTGKPEWFEPLMKAWDDAVRQFALAGSSDFDIISADKTVNNYHSRACALKQRIEIA-IDDIARKVI 627
            R+DY+ GTR +CRV  P LLSNGT ++PA ++   + L RCGLG   +Y   P     G+  V M  DAD+   +H      P H+   +  E I+K S+  ++  G+                         VADGV                 RP R  ++PA+ +P   E A    W       FG A+G    V    ++ LL     G  E V  T FR+++ +  ++RH+P       + +     + ++P           P   G   VT+      G+    +  +  A  L+     +G        +EV   D  P          +   D+ +   G  ++++ ++R     VE+ PF  +P     +A  LG+  E+  S P    F  C+         R   +  G    ++    AW  A    A        +    + V+++  R+CA  Q + +  ++++A  V+
Sbjct:  204 RADYVSGTRSVCRVPAPCLLSNGTWVLPAHLAAAHRSLSRCGLGFPLRYADTP-----GVGSVSMAPDADY---LHTHTRPPPAHMAH-FFPEVIMKGSFFAELGRGRGDLAPNRTCVTDGGPGGGAERCVDGVADGVGGXXXXXXXXXXXXXXXRPTRTVLRPAMLLPTAAELAAKGGWSAAAWATFGAAYG---PVTAYTAAQLLRPADAGGGE-VSATCFRSVVASAPVYRHVPPVVFGDGNAYFAAAGVARTPAVADAPAGDAPPARRGTLRVTVLTRARGGRSLVNADALAAAVRLRATTAAVGP-----VGVEVVHFDASPPPPLAAQRATLAATDVLLGAHGAGLTNVVWMRPGGALVEVFPFGFRPGLFGEVAAALGLVAEAVGSAPDAGAFHACM---------RAHAEPAGVAR-YDAAAAAWAAARAGSAAGLREPLALEDKREAVSSFAMRSCARAQALLVPNVEEVAAVVV 659          
BLAST of Ggra1442.t1 vs. uniprot
Match: A0A2V3IVL8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVL8_9FLOR)

HSP 1 Score: 80.9 bits (198), Expect = 3.100e-12
Identity = 104/469 (22.17%), Postives = 202/469 (43.07%), Query Frame = 0
Query:  195 MCRVSKPYLLSNGTILVPAWMSNYEKLLD-RCGLGKYGFY--PVTGPEGLEKVDMVDADFALTIHPERFQEPTHVPTVYLTEHILKASYLFDVFGGKAKVADGVTEHHCYTTSSESKCEEPRPIRAAMKPAIFVPHRIENAPSS-SWPRKYVEMFGRAHGHGQGVLHLNSSSLLIQEHEGQSENVFGTR-FRTIMITPGMFR--HLPDSGLSQASIFSTKNDIEKSPK----PKGS-----GACSVTIGIANGK-DTTSHGMEGA--SDLKDKIEELGKYA--MPEASIEVKTIDL-GPEVDFDTHVKEMQTLDLYVAGSGDDMSSIGFLRQQSTAVELMPFALQPVAHKNLARILG-IHYESFRSKPHDDDFKRCIDGEIFSLRKRGKLDLTGKPEW--FEPLMKAWDDAVRQFALAGSSDFDIISADKTVNNYHSRACALKQRIEIAIDDIARKVINTVKESCSSPQ 638
            +CRV    + ++ T+++P WM  ++ LL   CG  K  F     + P  L+ +D+V         P+  ++                + +FD+  G     D   +  C++    S C+    +  ++  AIF+P R+E      SW R++V++    +   Q       S +L +  +       G + FR+   T G +   H+ +  + + + F   + I+K  +     K +      +C + I I+N K D     + G   +++     E+ K A  +P  +I++ TI L G  + +   +  MQ  D+++AG G  ++++ FLRQ S+ +EL PFA  P  ++NLA  L  + YE + + P  + F+ CI           +L  +  P +   + + + +  A  +F  + S+   ++         + +ACA  QR+       A  ++   +  C  P+
Sbjct:  172 ICRVMNACIRNDDTLVLPRWMQRHDNLLSFHCGHRKLSFSLEDNSPPPSLKNLDLVGLTSPRPSMPDFVRD------------FAPNTVVFDLIYG-----DHELKQSCHSRKGTS-CDSFPSLNQSLNTAIFLPSRLEAINEKRSWVREFVKLMKPPNAGKQ-------SRILYKNIDVTESKELGMQCFRSAFFTRGPYNKFHVMNDHMRELN-FLKSHGIQKEARILRQDKSNDIVEEASCDLNITISNRKADDGDSKLIGRYITNIPTLRAEILKQAERIPGLNIKLDTITLEGKSLWW--QINAMQKTDVWIAGHGPLLTNMLFLRQNSSVIELQPFAYYPQTYENLAEHLAHVRYERYIANPDVEAFETCIR----------QLYTSDHPSYKDAQTIFERFRRASMKFFQSDSTHSLVLHTLAEEGLDYVKACARMQRLTTDAHVFAVAIVRHARVRCGLPK 602          
The following BLAST results are available for this feature:
BLAST of Ggra1442.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IEJ41.300e-27360.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QJ506.850e-16955.56Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NL244.170e-2023.14Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
A0A2V3IVL83.100e-1222.17Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..173
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 50..70
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..49
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 71..639
NoneNo IPR availableTMHMMTMhelixcoord: 48..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:98779..100698 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1442.t1Ggra1442.t1Gracilaria gracilis GNS1m malemRNAtig00000844_pilon 98779..100698 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1442.t1 ID=Ggra1442.t1|Name=Ggra1442.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=640bp
MPSVRQPPTSKRRRSSEKNGRRFSVKDSRKQPILPTSHPVSRKPSYSSNV
VRILAVAAVALLFFSASSMFRRVHRARQLIAPHYAPNDVVRGAEAHHDQP
QVKLETDDNDAAMKDTEHKGEEPPVENADTDSPPAADAAHVQSDTEHHEQ
EHKPAEGSSETVRHEEHEDPVSMEDPVENIEWYTRSDYMDGTRPMCRVSK
PYLLSNGTILVPAWMSNYEKLLDRCGLGKYGFYPVTGPEGLEKVDMVDAD
FALTIHPERFQEPTHVPTVYLTEHILKASYLFDVFGGKAKVADGVTEHHC
YTTSSESKCEEPRPIRAAMKPAIFVPHRIENAPSSSWPRKYVEMFGRAHG
HGQGVLHLNSSSLLIQEHEGQSENVFGTRFRTIMITPGMFRHLPDSGLSQ
ASIFSTKNDIEKSPKPKGSGACSVTIGIANGKDTTSHGMEGASDLKDKIE
ELGKYAMPEASIEVKTIDLGPEVDFDTHVKEMQTLDLYVAGSGDDMSSIG
FLRQQSTAVELMPFALQPVAHKNLARILGIHYESFRSKPHDDDFKRCIDG
EIFSLRKRGKLDLTGKPEWFEPLMKAWDDAVRQFALAGSSDFDIISADKT
VNNYHSRACALKQRIEIAIDDIARKVINTVKESCSSPQT*
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