Ggra1442.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1442.t1
Unique Name	Ggra1442.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	640

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:98779..100698 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1442	Ggra1442	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 98779..100698 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1442.t1.start1	Ggra1442.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 98779..98781 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1442.t1.CDS1	Ggra1442.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 98779..100698 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1442.t1.exon1	Ggra1442.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 98779..100698 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1442.t1.stop1	Ggra1442.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 100696..100698 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1442.t1	Ggra1442.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 98779..100698 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:98779..100698+
coding sequence from alignment at tig00000844_pilon:98779..100698+

mRNA sequence

>Ggra1442.t1 ID=Ggra1442.t1|Name=Ggra1442.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=640bp
MPSVRQPPTSKRRRSSEKNGRRFSVKDSRKQPILPTSHPVSRKPSYSSNV
VRILAVAAVALLFFSASSMFRRVHRARQLIAPHYAPNDVVRGAEAHHDQP
QVKLETDDNDAAMKDTEHKGEEPPVENADTDSPPAADAAHVQSDTEHHEQ
EHKPAEGSSETVRHEEHEDPVSMEDPVENIEWYTRSDYMDGTRPMCRVSK
PYLLSNGTILVPAWMSNYEKLLDRCGLGKYGFYPVTGPEGLEKVDMVDAD
FALTIHPERFQEPTHVPTVYLTEHILKASYLFDVFGGKAKVADGVTEHHC
YTTSSESKCEEPRPIRAAMKPAIFVPHRIENAPSSSWPRKYVEMFGRAHG
HGQGVLHLNSSSLLIQEHEGQSENVFGTRFRTIMITPGMFRHLPDSGLSQ
ASIFSTKNDIEKSPKPKGSGACSVTIGIANGKDTTSHGMEGASDLKDKIE
ELGKYAMPEASIEVKTIDLGPEVDFDTHVKEMQTLDLYVAGSGDDMSSIG
FLRQQSTAVELMPFALQPVAHKNLARILGIHYESFRSKPHDDDFKRCIDG
EIFSLRKRGKLDLTGKPEWFEPLMKAWDDAVRQFALAGSSDFDIISADKT
VNNYHSRACALKQRIEIAIDDIARKVINTVKESCSSPQT*

spliced messenger RNA

>Ggra1442.t1 ID=Ggra1442.t1|Name=Ggra1442.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1920bp|location=Sequence derived from alignment at tig00000844_pilon:98779..100698+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTCAGTTCGACAGCCGCCTACTAGCAAGCGTCGCAGATCATCAGA
AAAGAATGGACGCCGCTTCTCCGTCAAGGATTCGCGCAAGCAGCCCATTC
TTCCCACCTCTCACCCCGTTTCTCGCAAGCCCAGCTATTCTTCTAATGTT
GTTCGTATTCTAGCCGTTGCTGCCGTGGCGCTACTTTTCTTTTCTGCATC
CTCCATGTTTCGCCGAGTACATCGTGCTCGTCAACTCATTGCCCCCCACT
ATGCGCCAAATGATGTTGTCCGAGGCGCTGAAGCGCACCATGATCAGCCT
CAAGTCAAACTTGAAACTGACGACAACGATGCTGCCATGAAAGACACTGA
GCATAAAGGGGAAGAGCCGCCCGTTGAAAATGCTGATACAGATTCGCCTC
CTGCCGCTGATGCTGCTCACGTTCAGAGCGATACTGAACACCATGAACAA
GAACACAAGCCAGCAGAGGGCTCGTCAGAGACCGTTCGCCATGAAGAACA
TGAGGATCCAGTCTCTATGGAGGACCCCGTGGAGAATATTGAATGGTACA
CACGAAGCGATTACATGGACGGCACCCGTCCCATGTGTCGTGTTAGCAAG
CCGTATTTGCTAAGCAACGGAACTATATTGGTACCGGCTTGGATGTCCAA
CTATGAAAAGTTACTAGATCGTTGCGGTCTTGGCAAATATGGTTTCTACC
CAGTCACGGGCCCTGAGGGCTTGGAGAAAGTGGATATGGTTGACGCCGAT
TTCGCACTCACTATCCATCCAGAGCGTTTCCAAGAACCCACTCATGTGCC
AACGGTGTACCTCACGGAGCACATTCTGAAGGCTAGTTACCTGTTTGACG
TATTTGGAGGAAAAGCAAAGGTCGCCGATGGGGTCACTGAACATCACTGT
TATACGACAAGCTCTGAATCAAAGTGTGAAGAGCCACGACCTATTAGAGC
TGCCATGAAGCCAGCTATTTTTGTTCCGCATCGTATAGAAAATGCTCCTT
CCAGCTCCTGGCCACGAAAGTATGTTGAAATGTTCGGCAGAGCACATGGC
CATGGTCAAGGCGTTCTTCACCTCAACTCTTCATCTCTTCTCATTCAGGA
ACATGAAGGGCAGAGTGAGAACGTTTTCGGAACTCGATTCCGAACAATAA
TGATAACACCAGGCATGTTCCGCCACTTGCCGGACAGCGGTCTGAGCCAG
GCCAGTATTTTCTCGACCAAGAATGACATTGAGAAGTCTCCCAAACCAAA
GGGCTCTGGAGCATGTTCGGTGACGATTGGAATAGCTAATGGGAAGGACA
CCACATCTCATGGAATGGAAGGCGCTTCTGATCTCAAGGACAAGATTGAG
GAGCTTGGAAAGTACGCCATGCCGGAAGCCTCTATTGAAGTGAAGACCAT
TGACCTAGGGCCGGAGGTTGACTTTGACACTCATGTCAAAGAGATGCAGA
CATTGGACCTGTATGTGGCAGGCAGCGGGGACGATATGAGTAGTATCGGA
TTCTTGCGCCAGCAATCTACAGCGGTCGAGCTCATGCCATTCGCACTTCA
ACCAGTTGCGCACAAGAACCTTGCGAGAATTCTTGGAATTCACTACGAAA
GCTTCAGAAGTAAGCCACATGACGATGACTTCAAGAGATGTATCGACGGG
GAAATATTTAGCCTTCGCAAAAGAGGAAAACTTGATCTCACTGGAAAACC
GGAATGGTTTGAACCACTGATGAAAGCATGGGATGACGCTGTGAGACAAT
TCGCTCTCGCAGGCTCATCGGATTTCGATATCATCAGTGCAGATAAAACG
GTGAACAACTACCACTCTCGAGCATGTGCTCTAAAACAAAGAATCGAGAT
TGCAATAGACGACATCGCAAGAAAGGTAATTAACACTGTCAAAGAATCAT
GCTCGTCGCCTCAAACGTAA

protein sequence of Ggra1442.t1

>Ggra1442.t1 ID=Ggra1442.t1|Name=Ggra1442.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=640bp
MPSVRQPPTSKRRRSSEKNGRRFSVKDSRKQPILPTSHPVSRKPSYSSNV
VRILAVAAVALLFFSASSMFRRVHRARQLIAPHYAPNDVVRGAEAHHDQP
QVKLETDDNDAAMKDTEHKGEEPPVENADTDSPPAADAAHVQSDTEHHEQ
EHKPAEGSSETVRHEEHEDPVSMEDPVENIEWYTRSDYMDGTRPMCRVSK
PYLLSNGTILVPAWMSNYEKLLDRCGLGKYGFYPVTGPEGLEKVDMVDAD
FALTIHPERFQEPTHVPTVYLTEHILKASYLFDVFGGKAKVADGVTEHHC
YTTSSESKCEEPRPIRAAMKPAIFVPHRIENAPSSSWPRKYVEMFGRAHG
HGQGVLHLNSSSLLIQEHEGQSENVFGTRFRTIMITPGMFRHLPDSGLSQ
ASIFSTKNDIEKSPKPKGSGACSVTIGIANGKDTTSHGMEGASDLKDKIE
ELGKYAMPEASIEVKTIDLGPEVDFDTHVKEMQTLDLYVAGSGDDMSSIG
FLRQQSTAVELMPFALQPVAHKNLARILGIHYESFRSKPHDDDFKRCIDG
EIFSLRKRGKLDLTGKPEWFEPLMKAWDDAVRQFALAGSSDFDIISADKT
VNNYHSRACALKQRIEIAIDDIARKVINTVKESCSSPQT*

mRNA from alignment at tig00000844_pilon:98779..100698+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1442.t1 ID=Ggra1442.t1|Name=Ggra1442.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1920bp|location=Sequence derived from alignment at tig00000844_pilon:98779..100698+ (Gracilaria gracilis GNS1m male)
ATGCCCTCAGTTCGACAGCCGCCTACTAGCAAGCGTCGCAGATCATCAGA
AAAGAATGGACGCCGCTTCTCCGTCAAGGATTCGCGCAAGCAGCCCATTC
TTCCCACCTCTCACCCCGTTTCTCGCAAGCCCAGCTATTCTTCTAATGTT
GTTCGTATTCTAGCCGTTGCTGCCGTGGCGCTACTTTTCTTTTCTGCATC
CTCCATGTTTCGCCGAGTACATCGTGCTCGTCAACTCATTGCCCCCCACT
ATGCGCCAAATGATGTTGTCCGAGGCGCTGAAGCGCACCATGATCAGCCT
CAAGTCAAACTTGAAACTGACGACAACGATGCTGCCATGAAAGACACTGA
GCATAAAGGGGAAGAGCCGCCCGTTGAAAATGCTGATACAGATTCGCCTC
CTGCCGCTGATGCTGCTCACGTTCAGAGCGATACTGAACACCATGAACAA
GAACACAAGCCAGCAGAGGGCTCGTCAGAGACCGTTCGCCATGAAGAACA
TGAGGATCCAGTCTCTATGGAGGACCCCGTGGAGAATATTGAATGGTACA
CACGAAGCGATTACATGGACGGCACCCGTCCCATGTGTCGTGTTAGCAAG
CCGTATTTGCTAAGCAACGGAACTATATTGGTACCGGCTTGGATGTCCAA
CTATGAAAAGTTACTAGATCGTTGCGGTCTTGGCAAATATGGTTTCTACC
CAGTCACGGGCCCTGAGGGCTTGGAGAAAGTGGATATGGTTGACGCCGAT
TTCGCACTCACTATCCATCCAGAGCGTTTCCAAGAACCCACTCATGTGCC
AACGGTGTACCTCACGGAGCACATTCTGAAGGCTAGTTACCTGTTTGACG
TATTTGGAGGAAAAGCAAAGGTCGCCGATGGGGTCACTGAACATCACTGT
TATACGACAAGCTCTGAATCAAAGTGTGAAGAGCCACGACCTATTAGAGC
TGCCATGAAGCCAGCTATTTTTGTTCCGCATCGTATAGAAAATGCTCCTT
CCAGCTCCTGGCCACGAAAGTATGTTGAAATGTTCGGCAGAGCACATGGC
CATGGTCAAGGCGTTCTTCACCTCAACTCTTCATCTCTTCTCATTCAGGA
ACATGAAGGGCAGAGTGAGAACGTTTTCGGAACTCGATTCCGAACAATAA
TGATAACACCAGGCATGTTCCGCCACTTGCCGGACAGCGGTCTGAGCCAG
GCCAGTATTTTCTCGACCAAGAATGACATTGAGAAGTCTCCCAAACCAAA
GGGCTCTGGAGCATGTTCGGTGACGATTGGAATAGCTAATGGGAAGGACA
CCACATCTCATGGAATGGAAGGCGCTTCTGATCTCAAGGACAAGATTGAG
GAGCTTGGAAAGTACGCCATGCCGGAAGCCTCTATTGAAGTGAAGACCAT
TGACCTAGGGCCGGAGGTTGACTTTGACACTCATGTCAAAGAGATGCAGA
CATTGGACCTGTATGTGGCAGGCAGCGGGGACGATATGAGTAGTATCGGA
TTCTTGCGCCAGCAATCTACAGCGGTCGAGCTCATGCCATTCGCACTTCA
ACCAGTTGCGCACAAGAACCTTGCGAGAATTCTTGGAATTCACTACGAAA
GCTTCAGAAGTAAGCCACATGACGATGACTTCAAGAGATGTATCGACGGG
GAAATATTTAGCCTTCGCAAAAGAGGAAAACTTGATCTCACTGGAAAACC
GGAATGGTTTGAACCACTGATGAAAGCATGGGATGACGCTGTGAGACAAT
TCGCTCTCGCAGGCTCATCGGATTTCGATATCATCAGTGCAGATAAAACG
GTGAACAACTACCACTCTCGAGCATGTGCTCTAAAACAAAGAATCGAGAT
TGCAATAGACGACATCGCAAGAAAGGTAATTAACACTGTCAAAGAATCAT
GCTCGTCGCCTCAAACGTAA

Coding sequence (CDS) from alignment at tig00000844_pilon:98779..100698+

>Ggra1442.t1 ID=Ggra1442.t1|Name=Ggra1442.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1920bp|location=Sequence derived from alignment at tig00000844_pilon:98779..100698+ (Gracilaria gracilis GNS1m male)
ATGCCCTCAGTTCGACAGCCGCCTACTAGCAAGCGTCGCAGATCATCAGA
AAAGAATGGACGCCGCTTCTCCGTCAAGGATTCGCGCAAGCAGCCCATTC
TTCCCACCTCTCACCCCGTTTCTCGCAAGCCCAGCTATTCTTCTAATGTT
GTTCGTATTCTAGCCGTTGCTGCCGTGGCGCTACTTTTCTTTTCTGCATC
CTCCATGTTTCGCCGAGTACATCGTGCTCGTCAACTCATTGCCCCCCACT
ATGCGCCAAATGATGTTGTCCGAGGCGCTGAAGCGCACCATGATCAGCCT
CAAGTCAAACTTGAAACTGACGACAACGATGCTGCCATGAAAGACACTGA
GCATAAAGGGGAAGAGCCGCCCGTTGAAAATGCTGATACAGATTCGCCTC
CTGCCGCTGATGCTGCTCACGTTCAGAGCGATACTGAACACCATGAACAA
GAACACAAGCCAGCAGAGGGCTCGTCAGAGACCGTTCGCCATGAAGAACA
TGAGGATCCAGTCTCTATGGAGGACCCCGTGGAGAATATTGAATGGTACA
CACGAAGCGATTACATGGACGGCACCCGTCCCATGTGTCGTGTTAGCAAG
CCGTATTTGCTAAGCAACGGAACTATATTGGTACCGGCTTGGATGTCCAA
CTATGAAAAGTTACTAGATCGTTGCGGTCTTGGCAAATATGGTTTCTACC
CAGTCACGGGCCCTGAGGGCTTGGAGAAAGTGGATATGGTTGACGCCGAT
TTCGCACTCACTATCCATCCAGAGCGTTTCCAAGAACCCACTCATGTGCC
AACGGTGTACCTCACGGAGCACATTCTGAAGGCTAGTTACCTGTTTGACG
TATTTGGAGGAAAAGCAAAGGTCGCCGATGGGGTCACTGAACATCACTGT
TATACGACAAGCTCTGAATCAAAGTGTGAAGAGCCACGACCTATTAGAGC
TGCCATGAAGCCAGCTATTTTTGTTCCGCATCGTATAGAAAATGCTCCTT
CCAGCTCCTGGCCACGAAAGTATGTTGAAATGTTCGGCAGAGCACATGGC
CATGGTCAAGGCGTTCTTCACCTCAACTCTTCATCTCTTCTCATTCAGGA
ACATGAAGGGCAGAGTGAGAACGTTTTCGGAACTCGATTCCGAACAATAA
TGATAACACCAGGCATGTTCCGCCACTTGCCGGACAGCGGTCTGAGCCAG
GCCAGTATTTTCTCGACCAAGAATGACATTGAGAAGTCTCCCAAACCAAA
GGGCTCTGGAGCATGTTCGGTGACGATTGGAATAGCTAATGGGAAGGACA
CCACATCTCATGGAATGGAAGGCGCTTCTGATCTCAAGGACAAGATTGAG
GAGCTTGGAAAGTACGCCATGCCGGAAGCCTCTATTGAAGTGAAGACCAT
TGACCTAGGGCCGGAGGTTGACTTTGACACTCATGTCAAAGAGATGCAGA
CATTGGACCTGTATGTGGCAGGCAGCGGGGACGATATGAGTAGTATCGGA
TTCTTGCGCCAGCAATCTACAGCGGTCGAGCTCATGCCATTCGCACTTCA
ACCAGTTGCGCACAAGAACCTTGCGAGAATTCTTGGAATTCACTACGAAA
GCTTCAGAAGTAAGCCACATGACGATGACTTCAAGAGATGTATCGACGGG
GAAATATTTAGCCTTCGCAAAAGAGGAAAACTTGATCTCACTGGAAAACC
GGAATGGTTTGAACCACTGATGAAAGCATGGGATGACGCTGTGAGACAAT
TCGCTCTCGCAGGCTCATCGGATTTCGATATCATCAGTGCAGATAAAACG
GTGAACAACTACCACTCTCGAGCATGTGCTCTAAAACAAAGAATCGAGAT
TGCAATAGACGACATCGCAAGAAAGGTAATTAACACTGTCAAAGAATCAT
GCTCGTCGCCTCAAACGTAA