Ggra1433.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1433.t1
Unique NameGgra1433.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length650
Homology
BLAST of Ggra1433.t1 vs. uniprot
Match: A0A2V3IJM9 (B-cell lymphoma 6 protein-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJM9_9FLOR)

HSP 1 Score: 466 bits (1198), Expect = 5.960e-153
Identity = 264/558 (47.31%), Postives = 353/558 (63.26%), Query Frame = 0
Query:    1 MHLDPILARYFANSDVAEWLFARHDLRQVTANALDNAFVYTIGLRP-PNNIPTSNDIEDMLIVYALAGTFVLGVVYGLGKPHIFSETPFMAGQRPVTRRFAVDLSVCDALEFMETNYFSDGKMAVVFRRFLHTNDASLPVVVAATLHEPCDIPYTLGPIIMRTDVFEAPACPNCGRCGKRCSCSFDSYLPSGAITYNCFSWNQFSAMFLSKARHGLVRIRITARLANVGDVCISHTELPVRTVVDRGHGKYITLLKRKAVQGMGLNVIPVRLESPLLSKSVSNDFLDLHNHYVLRKRQRQPHLENQLDTQHAVPQDGAALEQQ----LQTIDLSELPTDYNPFSTISSNGMRRLLDNTDNALVPTQTVQFDNPPAIHPSTEAAPNPDALPQLVPAPFSQNIAHLGPQLCPVTTLAANNQPELASTGVREQQDIVNDIEDILRARVNL----------------------AAPHVQNCSNQIGTSEANSDEAQQPPRMVPPKRSSKKARTXXXSI-STKSTASEDSDISDKKHVCPTCSARFKMRGDLLRHIRTVHEGK 530
            M LDPIL RY AN+DV+ WLF R D+R VTA +L NA VY IG    P+N+    DIED+L+V  ++GTFVLG++YGL  PHIF+++PFMAG+RP+TRRFAVDLS  DALEF+E + F DGK AVV+RRFL+TND SLP VVAATLH PC IPYTLG  IMR DV EAPACPNCG+CGKRC CSFDSY P+GAIT+ C+SWNQFSAMFL KAR  +++  ITAR+ NVGDVCIS+TE+PV  V++RGH +Y+ LL+RKAV+G+GLNV+  R +SPL+S S SNDFLD+HN Y++RKR R+  L+   D    +  D ++          T ++ ++   ++P   + + G      + D  ++   TV   + P  +   E+    ++      +PF       G     +TT  + + P+    G     DI+ D+E +++ R+++                      A PH  +  N I  S  +S  + QP +   P  +S    T   S+ S+ S+ S DS+ S K+H C  C+ARFKMRGDLLRHIRTVHEGK
Sbjct:    1 MDLDPILNRYLANNDVSCWLFERKDIRTVTAESLQNAVVYAIGFHNLPSNVRRELDIEDILLVCGVSGTFVLGLLYGLATPHIFAKSPFMAGKRPLTRRFAVDLSQHDALEFLEIDSFEDGKTAVVYRRFLYTNDNSLPCVVAATLHLPCSIPYTLGTTIMRVDVLEAPACPNCGQCGKRCKCSFDSYAPTGAITHTCYSWNQFSAMFLQKARFAMIKYCITARVPNVGDVCISNTEIPVVNVIERGHKEYMNLLRRKAVEGLGLNVVMARNDSPLISSSTSNDFLDMHNQYIVRKR-RERELDLIEDNYQGLISDPSSSSDPSSLTAMTNNVLDITHRHHPIPPVHTEG------DADADILELITVLAKDEPGSNFVLESQQIDNSGEFDCASPF-------GAPPFTLTTTQSTHGPQEFDAGASSNSDILRDLESLVQTRMSISLSKSTAGTMAASTSAWQPSPNANPHSFSPIN-ITVSSKSSAGSYQPAKKRRPSATSN--TTGRNSVPSSASSGSADSETSGKRHSCSHCNARFKMRGDLLRHIRTVHEGK 541          
BLAST of Ggra1433.t1 vs. uniprot
Match: R7QJ28 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ28_CHOCR)

HSP 1 Score: 352 bits (904), Expect = 9.320e-109
Identity = 216/573 (37.70%), Postives = 313/573 (54.62%), Query Frame = 0
Query:    1 MHLDPILARYFANSDVAEWLFARHDLRQVTANALDNAFVYTIG--LRPPNNIPTSNDIEDMLIVYALAGTFVLGVVYGLGKPHIFSETPFMAGQRPVTRRFAVDLSVCDALEFMETNYFSDGKMAVVFRRFLHTNDASLPVVVAATLHEPCDIPYTLGPIIMRTDVFEAPACPNCGRCGKRCSCSFDSYLPSGAITYNCFSWNQFSAMFLSKARHGLVRIRITARLANVGDVCISHTELPVRTVVDRGHGKYITLLKRKAVQGMGLNVIPVRLESPLLSKSVSNDFLDLHNHYVLRKRQRQ------------------PH-LENQLDTQHAVPQDGAALEQQLQTID--LSELPTDYNPFSTISSNGMRRLLDNTDNALVPTQTVQFDNPPAIHPSTEAAPNPDALPQLVPAP---FSQNIAHLGPQLCPVTTLAANNQPELASTGVREQQDIVNDIEDILRARVNLAAPHVQ----------NCSNQIGTSEA------NSDEAQQPPRMVPPKRSSKKARTXXXSISTKSTASEDSDISDKKHVCPTCSARFKMRGDLLRHIRTVHEGKK 531
            M +D  L RY  N+DVA WLF    +R VT +A+  +FVY IG  + PP  +P + ++EDMLIV   AG F+LGV++GLG+PH+F+++P M  +RPV RRFAVD S  DALEFME + F DGK+ V+FR+F+HT D SLPVV  A LH P  I  TLGP++MR DVFEA +CP CG+ GK C CSFDSY PS  +  + ++WNQF++ F++KA+ G +++RITA L  +G++ I + E+PV  V+ +G+ +YI L + KA+ G+G+ VI  R ++ +++KS+ NDF+DLHN YV RKR R+                  P+ L N   T    P         ++++D  +S  P      +T +S      + N  + L+   T     P    P  +A+ +P     + P P    S N         P        +P+L        +DI + +E       NL A H            N  N + TS+       +S+ + +  R+     S K+ RT       K   +E     ++KH C TC +RFK RGDLLRH++ VHEGK+
Sbjct:    1 MDVDAALDRYLRNADVARWLFGWDPVRTVTPDAMAASFVYAIGWGVYPPG-VPRTMNVEDMLIVTGRAGDFILGVIWGLGQPHVFAKSPLMLNKRPVARRFAVDFSTKDALEFMEFDTFEDGKIIVMFRQFIHTLDLSLPVVATARLHAPSGIEQTLGPVLMRADVFEAASCPRCGQVGKSCLCSFDSYAPSSTVRKSTYTWNQFTSCFMAKAQVGTIKMRITAILPGIGELRIVNNEVPVLNVLQKGNSEYINLCRTKAIHGLGITVIMPRTDTLVMAKSIENDFIDLHNSYVTRKRVRETLDPGEDDFILDTALRPTPYALGNTQVTDFLHPSLAPTTSDSIESVDDFVSIFP---GMSATATSLNHPDAMANAQDVLLQQATAPLPEPEL--PYIDASFDPFGKAYIDPTPEIDLSPNFTATSGMDYPSPLEQPLTKPDLLDP----IEDIFSPLESQTLTPPNLTALHDPIPLELLDTSLNTPNGLETSKGVWSSVVSSETSAREARVTQVDGSGKQIRTASRKKRAKRHTNETGGDDERKHKCRTCESRFKNRGDLLRHVKVVHEGKR 563          
BLAST of Ggra1433.t1 vs. uniprot
Match: A0A1X6P6C1 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P6C1_PORUM)

HSP 1 Score: 97.4 bits (241), Expect = 3.020e-17
Identity = 74/287 (25.78%), Postives = 120/287 (41.81%), Query Frame = 0
Query:    3 LDPILARYFANSDVAEWLFARHDLRQVTANALDNAFVYTIGLR---PPNNIPTSN---------DIEDMLIVYALAGTFVLGVVYGLGKPHIFSETPFMAGQRPVTRRFAVDLSVCDALEFMETNYFSDGKMAVVFRRFLHTNDASLPVVVAAT-----------------LH--------------------------------EPCDIPYTLGP--------IIMRTDVFEAPACPNCGRCGKRCSCSFDSYLPSGAITYNCF--SWNQFSAMFLSKARHGLVRI 218
            ++ +  RY  +  V  WL     +  VT   L+++FVY++ L    P   +P            D+ED+L+        VLG ++GL   H+F+ TP + G  P+ RRFAVDLS  DALEF+E  +F+DG++ ++ R F+H    +LPV  +A                  LH                                +P  +    GP        ++++  VFE+  C +C      C+C     L +G +       SW  +   F+ K R+G+V +
Sbjct:    1 MNGVALRYLQHPAVRRWLLDPTPVSSVTNAHLESSFVYSLVLGRDVPDRAVPVVGPDAGPLMPMDVEDLLVEDTTVDDIVLGSIFGLRAGHVFAATPLLQGS-PLCRRFAVDLSRRDALEFIEFAWFADGRVLIMNRAFMHAEGGALPVAASAVIVSAAVPDDVHASARAILHAIDADCAAAAWSICGSPARGSPELAGRDGRGAQPPVLSQGSGPNLLSLGLSVVVKATVFESSDCGSCAALRVACACDIRQRL-AGLVKREMITDSWTHYVTQFMRKNRYGVVHV 285          
The following BLAST results are available for this feature:
BLAST of Ggra1433.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IJM95.960e-15347.31B-cell lymphoma 6 protein-like n=1 Tax=Gracilariop... [more]
R7QJ289.320e-10937.70Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6P6C13.020e-1725.78Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 533..556
e-value: 3.7E-4
score: 29.8
coord: 504..527
e-value: 0.0015
score: 27.8
coord: 562..585
e-value: 0.0019
score: 27.5
coord: 591..611
e-value: 84.0
score: 5.1
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 533..556
e-value: 1.3E-4
score: 22.2
coord: 562..585
e-value: 0.0022
score: 18.3
coord: 504..527
e-value: 0.001
score: 19.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 506..527
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 535..556
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 564..585
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 533..561
score: 12.486803
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 504..532
score: 11.925659
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 562..590
score: 12.902464
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 560..633
e-value: 2.8E-12
score: 48.5
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 530..559
e-value: 4.4E-8
score: 34.7
coord: 474..529
e-value: 3.1E-6
score: 28.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 451..496
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 477..494
NoneNo IPR availablePANTHERPTHR24388ZINC FINGER PROTEINcoord: 170..611
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..649
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..59
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 60..78
NoneNo IPR availableTMHMMTMhelixcoord: 59..78
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 502..553
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 541..597

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:76981..78930 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1433.t1Ggra1433.t1Gracilaria gracilis GNS1m malemRNAtig00000844_pilon 76981..78930 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1433.t1 ID=Ggra1433.t1|Name=Ggra1433.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=650bp
MHLDPILARYFANSDVAEWLFARHDLRQVTANALDNAFVYTIGLRPPNNI
PTSNDIEDMLIVYALAGTFVLGVVYGLGKPHIFSETPFMAGQRPVTRRFA
VDLSVCDALEFMETNYFSDGKMAVVFRRFLHTNDASLPVVVAATLHEPCD
IPYTLGPIIMRTDVFEAPACPNCGRCGKRCSCSFDSYLPSGAITYNCFSW
NQFSAMFLSKARHGLVRIRITARLANVGDVCISHTELPVRTVVDRGHGKY
ITLLKRKAVQGMGLNVIPVRLESPLLSKSVSNDFLDLHNHYVLRKRQRQP
HLENQLDTQHAVPQDGAALEQQLQTIDLSELPTDYNPFSTISSNGMRRLL
DNTDNALVPTQTVQFDNPPAIHPSTEAAPNPDALPQLVPAPFSQNIAHLG
PQLCPVTTLAANNQPELASTGVREQQDIVNDIEDILRARVNLAAPHVQNC
SNQIGTSEANSDEAQQPPRMVPPKRSSKKARTSSSSISTKSTASEDSDIS
DKKHVCPTCSARFKMRGDLLRHIRTVHEGKKRYQCPRCPKAFGHSGHLNR
HIQSVHLQQRRFKCNICGFQFFQASHLQSHMGHVHNPNKPFQCGDCGVRV
NSKVALRTHRSKTKCGTLGRDSNARLRTDISAQVPNSQATSSQRFPMSV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf