Ggra1433.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1433.t1
Unique NameGgra1433.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length650
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:76981..78930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1433Ggra1433Gracilaria gracilis GNS1m malegenetig00000844_pilon 76981..78930 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1433.t1.stop1Ggra1433.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 76981..76983 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1433.t1.CDS1Ggra1433.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 76981..78930 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1433.t1.exon1Ggra1433.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 76981..78930 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1433.t1.start1Ggra1433.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 78928..78930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1433.t1Ggra1433.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 76981..78930 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1433.t1 ID=Ggra1433.t1|Name=Ggra1433.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=650bp
MHLDPILARYFANSDVAEWLFARHDLRQVTANALDNAFVYTIGLRPPNNI
PTSNDIEDMLIVYALAGTFVLGVVYGLGKPHIFSETPFMAGQRPVTRRFA
VDLSVCDALEFMETNYFSDGKMAVVFRRFLHTNDASLPVVVAATLHEPCD
IPYTLGPIIMRTDVFEAPACPNCGRCGKRCSCSFDSYLPSGAITYNCFSW
NQFSAMFLSKARHGLVRIRITARLANVGDVCISHTELPVRTVVDRGHGKY
ITLLKRKAVQGMGLNVIPVRLESPLLSKSVSNDFLDLHNHYVLRKRQRQP
HLENQLDTQHAVPQDGAALEQQLQTIDLSELPTDYNPFSTISSNGMRRLL
DNTDNALVPTQTVQFDNPPAIHPSTEAAPNPDALPQLVPAPFSQNIAHLG
PQLCPVTTLAANNQPELASTGVREQQDIVNDIEDILRARVNLAAPHVQNC
SNQIGTSEANSDEAQQPPRMVPPKRSSKKARTSSSSISTKSTASEDSDIS
DKKHVCPTCSARFKMRGDLLRHIRTVHEGKKRYQCPRCPKAFGHSGHLNR
HIQSVHLQQRRFKCNICGFQFFQASHLQSHMGHVHNPNKPFQCGDCGVRV
NSKVALRTHRSKTKCGTLGRDSNARLRTDISAQVPNSQATSSQRFPMSV*
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spliced messenger RNA

>Ggra1433.t1 ID=Ggra1433.t1|Name=Ggra1433.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1950bp|location=Sequence derived from alignment at tig00000844_pilon:76981..78930- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCTCGATCCAATCCTGGCGCGCTACTTTGCAAACAGCGACGTCGC
CGAGTGGCTTTTTGCGCGCCATGACTTGAGGCAGGTCACTGCAAATGCGT
TAGACAATGCCTTTGTGTACACAATTGGTCTGCGACCGCCCAACAACATT
CCAACTTCTAATGACATCGAGGATATGCTAATTGTGTACGCTCTCGCCGG
CACATTCGTGCTTGGCGTTGTGTACGGCCTGGGAAAGCCTCATATATTTT
CGGAGACTCCTTTCATGGCTGGCCAACGCCCCGTCACGCGACGCTTTGCC
GTGGATCTCTCCGTATGCGACGCCCTTGAGTTTATGGAGACCAACTACTT
TTCGGATGGCAAGATGGCTGTCGTGTTTCGAAGGTTCTTGCATACCAATG
ATGCATCCCTGCCGGTTGTTGTGGCTGCCACTCTTCACGAACCCTGTGAT
ATCCCGTACACCTTGGGTCCAATCATAATGCGTACCGATGTGTTCGAGGC
TCCAGCGTGTCCCAATTGCGGTCGGTGCGGCAAACGATGTAGCTGCTCGT
TTGATAGCTATTTGCCCAGCGGAGCCATCACGTACAACTGCTTCTCTTGG
AATCAGTTCTCAGCAATGTTCTTATCGAAAGCGCGGCATGGTTTAGTCAG
AATCCGAATTACAGCACGTCTCGCGAATGTTGGAGATGTTTGTATCAGTC
ACACTGAACTGCCTGTGAGGACAGTTGTTGATAGGGGGCATGGTAAGTAC
ATAACGCTGCTCAAGCGCAAGGCTGTGCAAGGAATGGGTCTCAATGTTAT
TCCCGTCCGACTAGAATCTCCATTGCTCAGCAAGTCGGTTTCGAATGACT
TCCTGGATTTGCACAACCACTACGTGCTGCGCAAGCGCCAACGGCAGCCT
CACCTAGAGAATCAGCTTGATACTCAACATGCTGTCCCGCAGGATGGCGC
TGCTCTTGAACAACAGTTGCAAACCATCGACCTTTCCGAGCTCCCTACTG
ATTACAATCCCTTTTCGACGATAAGCTCTAACGGAATGCGAAGACTTCTA
GATAACACCGATAACGCCCTTGTACCAACTCAGACAGTCCAATTTGACAA
CCCTCCAGCCATTCACCCATCGACAGAGGCCGCGCCAAATCCGGATGCAT
TACCTCAACTTGTGCCCGCACCCTTTTCACAGAACATAGCGCATCTGGGT
CCTCAACTCTGTCCAGTTACAACATTAGCCGCAAACAACCAACCAGAACT
CGCTTCCACTGGTGTACGAGAGCAACAAGATATTGTCAACGACATTGAGG
ATATTCTTAGGGCTCGAGTGAATTTAGCCGCTCCGCATGTCCAAAACTGC
AGCAATCAAATAGGCACCTCGGAGGCGAACAGTGACGAAGCACAACAACC
CCCCCGCATGGTGCCTCCCAAACGGTCATCGAAGAAAGCGCGAACCTCAT
CGTCATCAATCTCAACAAAGTCTACTGCGTCCGAAGACAGTGATATCAGC
GACAAGAAGCATGTCTGCCCGACATGCTCTGCCCGATTCAAGATGAGAGG
AGATTTGTTGCGCCACATTCGAACGGTTCATGAGGGAAAGAAACGGTATC
AATGTCCAAGATGTCCGAAAGCTTTCGGACACTCAGGTCATCTCAACAGA
CATATACAATCGGTGCATTTGCAGCAGCGGAGGTTCAAGTGCAACATCTG
CGGGTTTCAGTTCTTCCAGGCATCTCATCTACAAAGCCACATGGGCCATG
TTCACAACCCAAACAAGCCTTTTCAATGCGGCGACTGTGGCGTTAGAGTT
AATAGCAAGGTTGCACTGAGAACTCACAGGAGTAAGACAAAGTGCGGCAC
ATTGGGAAGAGATTCAAACGCCCGTCTCAGAACTGATATAAGCGCTCAGG
TGCCAAACAGTCAGGCTACGAGCTCGCAAAGGTTTCCCATGAGCGTGTAG
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protein sequence of Ggra1433.t1

>Ggra1433.t1 ID=Ggra1433.t1|Name=Ggra1433.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=650bp
MHLDPILARYFANSDVAEWLFARHDLRQVTANALDNAFVYTIGLRPPNNI
PTSNDIEDMLIVYALAGTFVLGVVYGLGKPHIFSETPFMAGQRPVTRRFA
VDLSVCDALEFMETNYFSDGKMAVVFRRFLHTNDASLPVVVAATLHEPCD
IPYTLGPIIMRTDVFEAPACPNCGRCGKRCSCSFDSYLPSGAITYNCFSW
NQFSAMFLSKARHGLVRIRITARLANVGDVCISHTELPVRTVVDRGHGKY
ITLLKRKAVQGMGLNVIPVRLESPLLSKSVSNDFLDLHNHYVLRKRQRQP
HLENQLDTQHAVPQDGAALEQQLQTIDLSELPTDYNPFSTISSNGMRRLL
DNTDNALVPTQTVQFDNPPAIHPSTEAAPNPDALPQLVPAPFSQNIAHLG
PQLCPVTTLAANNQPELASTGVREQQDIVNDIEDILRARVNLAAPHVQNC
SNQIGTSEANSDEAQQPPRMVPPKRSSKKARTSSSSISTKSTASEDSDIS
DKKHVCPTCSARFKMRGDLLRHIRTVHEGKKRYQCPRCPKAFGHSGHLNR
HIQSVHLQQRRFKCNICGFQFFQASHLQSHMGHVHNPNKPFQCGDCGVRV
NSKVALRTHRSKTKCGTLGRDSNARLRTDISAQVPNSQATSSQRFPMSV*
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mRNA from alignment at tig00000844_pilon:76981..78930-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1433.t1 ID=Ggra1433.t1|Name=Ggra1433.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1950bp|location=Sequence derived from alignment at tig00000844_pilon:76981..78930- (Gracilaria gracilis GNS1m male)
ATGCACCTCGATCCAATCCTGGCGCGCTACTTTGCAAACAGCGACGTCGC
CGAGTGGCTTTTTGCGCGCCATGACTTGAGGCAGGTCACTGCAAATGCGT
TAGACAATGCCTTTGTGTACACAATTGGTCTGCGACCGCCCAACAACATT
CCAACTTCTAATGACATCGAGGATATGCTAATTGTGTACGCTCTCGCCGG
CACATTCGTGCTTGGCGTTGTGTACGGCCTGGGAAAGCCTCATATATTTT
CGGAGACTCCTTTCATGGCTGGCCAACGCCCCGTCACGCGACGCTTTGCC
GTGGATCTCTCCGTATGCGACGCCCTTGAGTTTATGGAGACCAACTACTT
TTCGGATGGCAAGATGGCTGTCGTGTTTCGAAGGTTCTTGCATACCAATG
ATGCATCCCTGCCGGTTGTTGTGGCTGCCACTCTTCACGAACCCTGTGAT
ATCCCGTACACCTTGGGTCCAATCATAATGCGTACCGATGTGTTCGAGGC
TCCAGCGTGTCCCAATTGCGGTCGGTGCGGCAAACGATGTAGCTGCTCGT
TTGATAGCTATTTGCCCAGCGGAGCCATCACGTACAACTGCTTCTCTTGG
AATCAGTTCTCAGCAATGTTCTTATCGAAAGCGCGGCATGGTTTAGTCAG
AATCCGAATTACAGCACGTCTCGCGAATGTTGGAGATGTTTGTATCAGTC
ACACTGAACTGCCTGTGAGGACAGTTGTTGATAGGGGGCATGGTAAGTAC
ATAACGCTGCTCAAGCGCAAGGCTGTGCAAGGAATGGGTCTCAATGTTAT
TCCCGTCCGACTAGAATCTCCATTGCTCAGCAAGTCGGTTTCGAATGACT
TCCTGGATTTGCACAACCACTACGTGCTGCGCAAGCGCCAACGGCAGCCT
CACCTAGAGAATCAGCTTGATACTCAACATGCTGTCCCGCAGGATGGCGC
TGCTCTTGAACAACAGTTGCAAACCATCGACCTTTCCGAGCTCCCTACTG
ATTACAATCCCTTTTCGACGATAAGCTCTAACGGAATGCGAAGACTTCTA
GATAACACCGATAACGCCCTTGTACCAACTCAGACAGTCCAATTTGACAA
CCCTCCAGCCATTCACCCATCGACAGAGGCCGCGCCAAATCCGGATGCAT
TACCTCAACTTGTGCCCGCACCCTTTTCACAGAACATAGCGCATCTGGGT
CCTCAACTCTGTCCAGTTACAACATTAGCCGCAAACAACCAACCAGAACT
CGCTTCCACTGGTGTACGAGAGCAACAAGATATTGTCAACGACATTGAGG
ATATTCTTAGGGCTCGAGTGAATTTAGCCGCTCCGCATGTCCAAAACTGC
AGCAATCAAATAGGCACCTCGGAGGCGAACAGTGACGAAGCACAACAACC
CCCCCGCATGGTGCCTCCCAAACGGTCATCGAAGAAAGCGCGAACCTCAT
CGTCATCAATCTCAACAAAGTCTACTGCGTCCGAAGACAGTGATATCAGC
GACAAGAAGCATGTCTGCCCGACATGCTCTGCCCGATTCAAGATGAGAGG
AGATTTGTTGCGCCACATTCGAACGGTTCATGAGGGAAAGAAACGGTATC
AATGTCCAAGATGTCCGAAAGCTTTCGGACACTCAGGTCATCTCAACAGA
CATATACAATCGGTGCATTTGCAGCAGCGGAGGTTCAAGTGCAACATCTG
CGGGTTTCAGTTCTTCCAGGCATCTCATCTACAAAGCCACATGGGCCATG
TTCACAACCCAAACAAGCCTTTTCAATGCGGCGACTGTGGCGTTAGAGTT
AATAGCAAGGTTGCACTGAGAACTCACAGGAGTAAGACAAAGTGCGGCAC
ATTGGGAAGAGATTCAAACGCCCGTCTCAGAACTGATATAAGCGCTCAGG
TGCCAAACAGTCAGGCTACGAGCTCGCAAAGGTTTCCCATGAGCGTGTAG
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Coding sequence (CDS) from alignment at tig00000844_pilon:76981..78930-

>Ggra1433.t1 ID=Ggra1433.t1|Name=Ggra1433.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1950bp|location=Sequence derived from alignment at tig00000844_pilon:76981..78930- (Gracilaria gracilis GNS1m male)
ATGCACCTCGATCCAATCCTGGCGCGCTACTTTGCAAACAGCGACGTCGC
CGAGTGGCTTTTTGCGCGCCATGACTTGAGGCAGGTCACTGCAAATGCGT
TAGACAATGCCTTTGTGTACACAATTGGTCTGCGACCGCCCAACAACATT
CCAACTTCTAATGACATCGAGGATATGCTAATTGTGTACGCTCTCGCCGG
CACATTCGTGCTTGGCGTTGTGTACGGCCTGGGAAAGCCTCATATATTTT
CGGAGACTCCTTTCATGGCTGGCCAACGCCCCGTCACGCGACGCTTTGCC
GTGGATCTCTCCGTATGCGACGCCCTTGAGTTTATGGAGACCAACTACTT
TTCGGATGGCAAGATGGCTGTCGTGTTTCGAAGGTTCTTGCATACCAATG
ATGCATCCCTGCCGGTTGTTGTGGCTGCCACTCTTCACGAACCCTGTGAT
ATCCCGTACACCTTGGGTCCAATCATAATGCGTACCGATGTGTTCGAGGC
TCCAGCGTGTCCCAATTGCGGTCGGTGCGGCAAACGATGTAGCTGCTCGT
TTGATAGCTATTTGCCCAGCGGAGCCATCACGTACAACTGCTTCTCTTGG
AATCAGTTCTCAGCAATGTTCTTATCGAAAGCGCGGCATGGTTTAGTCAG
AATCCGAATTACAGCACGTCTCGCGAATGTTGGAGATGTTTGTATCAGTC
ACACTGAACTGCCTGTGAGGACAGTTGTTGATAGGGGGCATGGTAAGTAC
ATAACGCTGCTCAAGCGCAAGGCTGTGCAAGGAATGGGTCTCAATGTTAT
TCCCGTCCGACTAGAATCTCCATTGCTCAGCAAGTCGGTTTCGAATGACT
TCCTGGATTTGCACAACCACTACGTGCTGCGCAAGCGCCAACGGCAGCCT
CACCTAGAGAATCAGCTTGATACTCAACATGCTGTCCCGCAGGATGGCGC
TGCTCTTGAACAACAGTTGCAAACCATCGACCTTTCCGAGCTCCCTACTG
ATTACAATCCCTTTTCGACGATAAGCTCTAACGGAATGCGAAGACTTCTA
GATAACACCGATAACGCCCTTGTACCAACTCAGACAGTCCAATTTGACAA
CCCTCCAGCCATTCACCCATCGACAGAGGCCGCGCCAAATCCGGATGCAT
TACCTCAACTTGTGCCCGCACCCTTTTCACAGAACATAGCGCATCTGGGT
CCTCAACTCTGTCCAGTTACAACATTAGCCGCAAACAACCAACCAGAACT
CGCTTCCACTGGTGTACGAGAGCAACAAGATATTGTCAACGACATTGAGG
ATATTCTTAGGGCTCGAGTGAATTTAGCCGCTCCGCATGTCCAAAACTGC
AGCAATCAAATAGGCACCTCGGAGGCGAACAGTGACGAAGCACAACAACC
CCCCCGCATGGTGCCTCCCAAACGGTCATCGAAGAAAGCGCGAACCTCAT
CGTCATCAATCTCAACAAAGTCTACTGCGTCCGAAGACAGTGATATCAGC
GACAAGAAGCATGTCTGCCCGACATGCTCTGCCCGATTCAAGATGAGAGG
AGATTTGTTGCGCCACATTCGAACGGTTCATGAGGGAAAGAAACGGTATC
AATGTCCAAGATGTCCGAAAGCTTTCGGACACTCAGGTCATCTCAACAGA
CATATACAATCGGTGCATTTGCAGCAGCGGAGGTTCAAGTGCAACATCTG
CGGGTTTCAGTTCTTCCAGGCATCTCATCTACAAAGCCACATGGGCCATG
TTCACAACCCAAACAAGCCTTTTCAATGCGGCGACTGTGGCGTTAGAGTT
AATAGCAAGGTTGCACTGAGAACTCACAGGAGTAAGACAAAGTGCGGCAC
ATTGGGAAGAGATTCAAACGCCCGTCTCAGAACTGATATAAGCGCTCAGG
TGCCAAACAGTCAGGCTACGAGCTCGCAAAGGTTTCCCATGAGCGTGTAG
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