Ggra1423.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1423.t1
Unique NameGgra1423.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length294
Homology
BLAST of Ggra1423.t1 vs. uniprot
Match: A0A2V3IJN1 (Exosome complex component RRP43 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJN1_9FLOR)

HSP 1 Score: 394 bits (1012), Expect = 1.350e-135
Identity = 203/295 (68.81%), Postives = 245/295 (83.05%), Query Frame = 0
Query:    1 MVNEEAYRKIHPREYLKRFIDKDVRPDGRALSTARVFKLTTSSISTAVGSALVRLGSTTVLAGVTATLVRPDHGTPEKGIASVSVELLSTSCGESRIVRADDALVLTEFLRTLISPHIDLSKLCIEPGKLVWNLNLTVYCVDHDGNLEDSVVLAAVAALRNVRLPTVRMTDEQSNG-VENETENDLMNTEESEFDESG-SVIAVASARRTEFLELDSFPLTVSFQLFCEKALVDPSSEEEKVCSSRVTYVMRPSGDLRGVLKPGGHNLSEELYKSCLRRSKKRVAEYMKVLKADG 293
            M++E+ YRK+HP+EYLKRFIDKDVRPDGRA+STAR  +LT  SI+TAVGSALVRLG+TTVLAGV ATL+RP++  P+KGI  VSVELL T+ GESR VR ++A+VL EFLRTLI PHID+S LC+E  KLVW L+LTVYC+DHDGNLEDSVVLAAVAALRNVRLPTVRM D    G +EN  EN  M   ++E +E   S++AV S++RTE LELD+FPLTVSFQLFCEKAL+DPS+EEE VC SRVT++M+P+GD+RG+LK GGH LS +LY SCL +SK+RV EYMK L+A  
Sbjct:    1 MISEDVYRKVHPKEYLKRFIDKDVRPDGRAVSTARYLRLTIGSINTAVGSALVRLGNTTVLAGVNATLIRPNNANPDKGIVEVSVELLPTASGESRNVRGEEAVVLAEFLRTLIIPHIDVSTLCVEADKLVWCLSLTVYCIDHDGNLEDSVVLAAVAALRNVRLPTVRMVDGDEGGDIENGIENTRMIDADNEAEEGNESIMAVVSSKRTESLELDNFPLTVSFQLFCEKALIDPSAEEEVVCVSRVTFIMKPTGDMRGILKEGGHILSPKLYNSCLAQSKERVKEYMKKLQAGS 295          
BLAST of Ggra1423.t1 vs. uniprot
Match: R7QL29 (Ribosomal RNA-processing protein 43 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QL29_CHOCR)

HSP 1 Score: 298 bits (763), Expect = 7.960e-98
Identity = 157/297 (52.86%), Postives = 219/297 (73.74%), Query Frame = 0
Query:    2 VNEEAYRKIHPREYLKRFIDKDVRPDGRALSTARVFKLTTSSISTAVGSALVRLGSTTVLAGVTATLVRPDHGTPEKGIASVSVELLSTSCGESRIVRA-DDALVLTEFLRTLISPHIDLSKLCIEPGKLVWNLNLTVYCVDHDGNLEDSVVLAAVAALRNVRLPTVRMTDEQ------SNGVENETENDLMNTEESEFDESGSVIAVASARRTEFLELDSFPLTVSFQLFCEKALVDPSSEEEKVCSSRVTYVMRPSGDLRGVLKPGGHNLSEELYKSCLRRSKKRVAEYMKVLKA 291
            +++E ++K+HPREYL RF++KDVRPDGR+L+ AR   +T SSI+TAVGSA++++G TT +AGV ATLV+P  G P++GI  V+VELL  +    +  R+ ++A+ LTE+LR+LISPHI++SKLC+E G LVW L LTVYCVD+DGNLED+++LA VAA+RNV LP+VR+  E+      +  VE +TEN      E     + S+IAVA+  RT  LE+D++PL +SF LF  K L+DPS  EE VC SR+T++ RP+G+LRGVLKPGG N+ E LY+SCL  +K+R+ +    L+A
Sbjct:    1 MDQEVFQKVHPREYLARFLNKDVRPDGRSLTKARRVNITVSSIATAVGSAMLKMGKTTAVAGVHATLVQPAPGAPDQGILDVAVELLPMASPNYKSGRSSEEAICLTEYLRSLISPHINMSKLCVEAGLLVWQLRLTVYCVDNDGNLEDAILLAGVAAMRNVLLPSVRIIGEEVDEGRDAQMVEVKTEN------EEGXXXAESIIAVATVERTNSLEIDTYPLPISFILFDGKVLIDPSVAEESVCDSRITFLFRPTGELRGVLKPGGKNVPENLYQSCLTMAKERIPKLQAKLEA 291          
BLAST of Ggra1423.t1 vs. uniprot
Match: A0A0L0HN85 (Ribosomal RNA-processing protein 43 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HN85_SPIPD)

HSP 1 Score: 159 bits (403), Expect = 1.640e-43
Identity = 101/292 (34.59%), Postives = 160/292 (54.79%), Query Frame = 0
Query:    2 VNEEAYRKIHPREYLKRFIDKDVRPDGRALSTARVFKLTTSSISTAVGSALVRLGSTTVLAGVTATLVRPDHGTPEKGIASVSVELLSTSCGESRIVRADD-ALVLTEFLRTLI--SPHIDLSKLCIEPGKLVWNLNLTVYCVDHDGNLEDSVVLAAVAALRNVRLPTVRMTDEQSNGVENETENDLMNTEESEFDESGSVIAVASARRTEFLELDSFPLTVSFQLFCEK-ALVDPSSEEEKVCSSRVTYVMRPSGDLRGVLKPGGHNLSEELYKSCLRRSKKRVAEYMKVL 289
            ++ E ++KIHP EY +RF+ + VRPDGR LS  R  K+T  +I+TA GSA+ RLG TTV+ G+ A +  P  G P  G    + +L      + +     + +  ++E++  ++  S  ++LS LCIE G+ VW L   + C++++GN  D+ +LA VAAL++VRLPT                          F E+ + + V   +RT  L+L   P++V+F +F  +  L DP  EEE   SS++T ++  +G L G+LKPGG  L +E   SCL  ++ R    + +L
Sbjct:   30 LDSETFKKIHPTEYHRRFLSQGVRPDGRTLSRFRKAKITVGAITTAHGSAMARLGETTVVCGIKAEITEPKTGAPRDGFIVPNFDLPPLCSPQFKPGPPSELSQSISEYINRVLESSKLLNLSDLCIEEGRAVWVLYADIVCLNYEGNAMDAAMLALVAALKHVRLPTAT------------------------FYEADNAVRVKE-QRTIPLKLSRTPISVTFGVFDGQFILADPDIEEEPHLSSQLTVIIEQNGGLCGMLKPGGSALGQETLTSCLEAARTRATHILGIL 296          
BLAST of Ggra1423.t1 vs. uniprot
Match: A9RPF4 (Ribosomal RNA-processing protein 43 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RPF4_PHYPA)

HSP 1 Score: 159 bits (403), Expect = 2.460e-43
Identity = 107/284 (37.68%), Postives = 160/284 (56.34%), Query Frame = 0
Query:    5 EAYRKIHPREYLKRFIDKDVRPDGRALSTARVFKLTTSSISTAVGSALVRLGSTTVLAGVTATLVRPDHGTPEKGIASVSVELLSTSCGESRIVR-ADDALVLTEFLRTLI--SPHIDLSKLCIEPGKLVWNLNLTVYCVDHDGNLEDSVVLAAVAALRNVRLPTVRMTDEQSNGVENETENDLMNTEESEFDESGSVIAVASARRTEFLELDSFPLTVSFQLFCEKALVDPSSEEEKVCSSRVTYVMRPSGDLRGVLKPGGH-NLSEELYKSCLRRSKKRVAE 284
            EAY++++P ++ +R +D DVRPDGR L+ AR   +   SI+TA GSALV++G+TT+LAGV   ++ P   +P +G  +V  ++ S      R  R A+ A V++E L   +  S  ++L +LCI PGK  W   + VYC+D DG+L D+ +LAAVAAL +++LP V++T E    V  +  N     E     +      V S +R   LE  S P+ ++     +  L DPS+EEE +    +T +M  SG L    KPGG    +    K C+  +KKRVAE
Sbjct:   20 EAYKRLYPLQFYERHLDSDVRPDGRPLTRARPTSVNLGSIATADGSALVKIGNTTMLAGVKLEVITPSTASPNQGQVAVDFQMPSICSPLVRPGRPAEAAWVVSEQLSNALVSSNFVNLQQLCIVPGKAAWIAYVDVYCLDADGSLLDAALLAAVAALTHLQLPAVKVT-ETGRVVPLKNHNGDAGQEVDSIAKKNEDQIVKSRQR---LERSSMPIALTCVSHRKHLLADPSAEEESILQMSLTVIMDTSGRLISFYKPGGAVAATSATVKDCIELTKKRVAE 299          
BLAST of Ggra1423.t1 vs. uniprot
Match: exosome complex component RRP43-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE543AB (exosome complex component RRP43-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE543AB)

HSP 1 Score: 159 bits (402), Expect = 4.880e-43
Identity = 102/287 (35.54%), Postives = 161/287 (56.10%), Query Frame = 0
Query:    7 YRKIHPREYLKRFIDKDVRPDGRALSTARVFKLTTSSISTAVGSALVRLGSTTVLAGVTATLVRPDHGTPEKGIASVSVELLSTSCGESRI-VRADDALVLTEFLRTLISPH--IDLSKLCIEPGKLVWNLNLTVYCVDHDGNLEDSVVLAAVAALRNVRLPTVRMTDEQSNGVENETENDLMNTEESEFDESGSVIAVASARRTEFLELDSFPLTVSFQLFCEKAL-VDPSSEEEKVCSSRVTYVMRPSGDLRGVLKPGGHNLSEELYKSCLRRSKKRVAEYMKVL 289
            ++  HPREY +RF++KDVRPDGR L   R   L    ++TA GS+LVRLG+TTV+ G+ A L  P    P++G    +VEL      + R     + A VL++ +  ++S    I+L  LC+ P KLVW L+  + C+++DGN+ D+ VLA +AA RN +LP V +++E               TEE E D           R T+ L+L S P++ +F  F +  L VDP+++EE + +  +T V   + ++  + KPGG  L+E   + C+ R+K R  + +K++
Sbjct:   64 FKTAHPREYYRRFLEKDVRPDGRELGEFRSTVLNIGCVTTAEGSSLVRLGNTTVMCGIKAELATPKTDAPKQGYIVPNVELSPLCSPQFRPGPPGEQAQVLSQLMAEVVSSSNCIELEDLCVVPHKLVWVLHCDMVCLNYDGNITDACVLALLAAFRNTQLPGVHVSEE---------------TEEVETD----------LRSTDPLQLRSLPVSTTFNCFDDHILFVDPTADEESLATGMITIVTA-ADNMCMLHKPGGSPLTESQIQQCINRAKTRSQQVLKLI 324          
BLAST of Ggra1423.t1 vs. uniprot
Match: A0A7M5X903 (Ribosomal RNA-processing protein 43 n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X903_9CNID)

HSP 1 Score: 154 bits (390), Expect = 7.120e-42
Identity = 100/287 (34.84%), Postives = 156/287 (54.36%), Query Frame = 0
Query:    7 YRKIHPREYLKRFIDKDVRPDGRALSTARVFKLTTSSISTAVGSALVRLGSTTVLAGVTATLVRPDHGTPEKGIASVSVELLSTSCGESRI-VRADDALVLTEFLRTLI--SPHIDLSKLCIEPGKLVWNLNLTVYCVDHDGNLEDSVVLAAVAALRNVRLPTVRMTDEQSNGVENETENDLMNTEESEFDESGSVIAVASARRTEFLELDSFPLTVSFQLFCEKALV-DPSSEEEKVCSSRVTYVMRPSGDLRGVLKPGGHNLSEELYKSCLRRSKKRVAEYMKVL 289
            ++   P E+ K F+ ++VRPDGR L   R   L   SI+TA GSALVRLG T V+ G++A L  P   TP+KG    +V+L  +   + R    +DDA +L++F+  +   S  + L  LCI   KL W +   + C+ HDGNL+D+++ A  AALRN +LPTV   +E +         D+   ++  F                 L + + P++ +F LF ++ L+ DP++EEE++ +  +T V+   G L  V KPGG  + EE  K C+R + KR AE + ++
Sbjct:    5 FKTAQPIEFYKHFLKENVRPDGRELLKFRDALLNIGSINTARGSALVRLGHTMVICGISAELAEPKATTPDKGFFVPNVDLPPSCSNKYRPGPPSDDAQILSQFVLDVATNSEVLKLENLCIATKKLAWVIYADIQCISHDGNLKDAIIAALYAALRNTKLPTVEYNEETA---------DVQVKQDQLFQ----------------LPIQTCPVSSTFALFQDEILLADPTNEEEEISNGTITIVVNSEGKLCMVSKPGGAEMKEEKLKVCIRTALKRHAEVLSLV 266          
BLAST of Ggra1423.t1 vs. uniprot
Match: R7TKM0 (Ribosomal RNA-processing protein 43 n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TKM0_CAPTE)

HSP 1 Score: 154 bits (389), Expect = 1.000e-41
Identity = 101/283 (35.69%), Postives = 152/283 (53.71%), Query Frame = 0
Query:   12 PREYLKRFIDKDVRPDGRALSTARVFKLTTSSISTAVGSALVRLGSTTVLAGVTATLVRPDHGTPEKGIASVSVELLSTSCGESRI-VRADDALVLTEFLRTLI--SPHIDLSKLCIEPGKLVWNLNLTVYCVDHDGNLEDSVVLAAVAALRNVRLPTVRMTDEQSNGVENETENDLMNTEESEFDESGSVIAVASARRTEFLELDSFPLTVSFQLFCEKAL-VDPSSEEEKVCSSRVTYVMRPSGDLRGVLKPGGHNLSEELYKSCLRRSKKRVAEYMKVLK 290
            P EY  RF+++DVRPDGR L   R   L   SI TA GSALV+LG+T +L G+ A +V  +  TPE+GI   SV LL  S  + R     D A   T F+  L+  S  +DL  LCIE GK  WNL+  + C+D+DGN+ D+  LA +AAL+N  LP V + +E                       SG+V     A+    L +++ P++ +  +F +K L VDP+ EEE + +  +T V +    +    KPGG ++     + C++RS+ R  E +++++
Sbjct:   10 PFEYYSRFLEQDVRPDGRDLGGIRPTTLNVGSIDTADGSALVKLGNTCILCGIKAEMVASNPETPEQGIVDSSVSLLPMSTPQFRDRPPVDLAPSCTHFIEQLLTCSGCLDLKDLCIEKGKHAWNLHCDLMCLDYDGNVLDACCLALIAALKNTVLPKVTIDEE-----------------------SGTV--KLDAKEKHPLSVNAVPVSTTLAIFADKVLFVDPTQEEESLATGFITVVTKDDDHICMTYKPGGSSVQPSQMQDCIKRSQHRRPEVLQLIR 267          
BLAST of Ggra1423.t1 vs. uniprot
Match: A7SQ48 (Ribosomal RNA-processing protein 43 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SQ48_NEMVE)

HSP 1 Score: 153 bits (386), Expect = 2.720e-41
Identity = 106/289 (36.68%), Postives = 156/289 (53.98%), Query Frame = 0
Query:    7 YRKIHPREYLKRFIDKDVRPDGRALSTARVFKLTTSSISTAVGSALVRLGSTTVLAGVTATLVRPDHGTPEKGIASVSVELLSTSCGESRI-VRADDALVLTEFLRTLI--SPHIDLSKLCIEPGKLVWNLNLTVYCVDHDGNLEDSVVLAAVAALRNVRLPTVRMTDEQSNGVENETENDLMNTEESEFDESGSVIAVASARRTEFLELDSFPLTVSFQLFCEKALV-DPSSEEEKVCSSRVTYVMRPSGDLRGVLKPGGHNLSEELYKSCLRRSKKRVAEYMKVLKA 291
            ++   P EY K+F+ +++RPDGR L   R   L   SISTA GSALV+LG+TTV+ GVTA    P    P KG    +V+L        R    ++ A VL+ F+  LI  S  IDL  LCI  GKLVW L + + C+D+DGN+ D+ V+A +AAL+N RL TV + +E               TE  E  E+  +           L+L S P+ V+F +F +  +  DP+ EEE++ S +V+ VM  +  +  V KPGG  L+++  + C   +  RV E  +++ A
Sbjct:    5 FKTAEPVEYYKQFLKENIRPDGRGLFDFRETILNVGSISTANGSALVKLGNTTVVCGVTAEFAEPAADVPNKGFIVPNVDLPPLCSPSFRPGPPSEHAQVLSTFIDNLITNSQLIDLEDLCIVDGKLVWVLYIDLMCLDYDGNVADAAVIAMLAALQNTRLHTVTINEE---------------TETPEPSENKDI----------HLKLKSMPVAVTFGIFDDDHIYCDPTDEEERLASGKVSVVMTTNNKVVAVHKPGGPPLTQDKLQECFDVTTGRVLEVQQLIDA 268          
BLAST of Ggra1423.t1 vs. uniprot
Match: A0A8B7XGS1 (Ribosomal RNA-processing protein 43 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XGS1_ACAPL)

HSP 1 Score: 153 bits (386), Expect = 2.800e-41
Identity = 98/287 (34.15%), Postives = 151/287 (52.61%), Query Frame = 0
Query:    7 YRKIHPREYLKRFIDKDVRPDGRALSTARVFKLTTSSISTAVGSALVRLGSTTVLAGVTATLVRPDHGTPEKGIASVSVELLSTSCGESRI-VRADDALVLTEFLRTLIS--PHIDLSKLCIEPGKLVWNLNLTVYCVDHDGNLEDSVVLAAVAALRNVRLPTVRMTDEQSNGVENETENDLMNTEESEFDESGSVIAVASARRTEFLELDSFPLTVSFQLFCEKALV-DPSSEEEKVCSSRVTYVMRPSGDLRGVLKPGGHNLSEELYKSCLRRSKKRVAEYMKVL 289
            ++   P EY ++F+ +D+RPDGR L   R   L   SI+TA GSALV+LG+TT + G+ A    P    P+ GI   +V+L        +    ++ A V+T+ L  +I+    IDL  LCI   KL W L   + C+D+DGN+ D+ ++A VAALRNV LP V +                         E  S + V S+ +T  L + + P+  +F +F E  L+ DP++EEE + +  VT VM   G L+ V KPGG  LS +  + C+ R++ R  +  +++
Sbjct:    7 FKTAQPVEYYRKFLKEDIRPDGRELGEIRPTILNVGSITTADGSALVKLGNTTCICGIKAEFCTPKEDLPKCGIVVPNVDLPPLCSSRFKPGPPSEQAQVVTQLLADVINNAKSIDLESLCIVEAKLCWVLFCDIVCLDYDGNIVDACLVALVAALRNVLLPEVTI-------------------------EEDSQLPVTSSDKTVSLSIHNTPVATTFAIFDESVLLADPTNEEESIATGEVTIVMTEDGRLQAVHKPGGSPLSPDQLQDCITRTQTRSEDVRRLI 268          
BLAST of Ggra1423.t1 vs. uniprot
Match: exosome complex component RRP43-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBA186 (exosome complex component RRP43-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBA186)

HSP 1 Score: 152 bits (384), Expect = 5.250e-41
Identity = 96/287 (33.45%), Postives = 155/287 (54.01%), Query Frame = 0
Query:    7 YRKIHPREYLKRFIDKDVRPDGRALSTARVFKLTTSSISTAVGSALVRLGSTTVLAGVTATLVRPDHGTPEKGIASVSVELLSTSCGESRI-VRADDALVLTEFLRTLI--SPHIDLSKLCIEPGKLVWNLNLTVYCVDHDGNLEDSVVLAAVAALRNVRLPTVRMTDEQSNGVENETENDLMNTEESEFDESGSVIAVASARRTEFLELDSFPLTVSFQLFCEKALV-DPSSEEEKVCSSRVTYVMRPSGDLRGVLKPGGHNLSEELYKSCLRRSKKRVAEYMKVL 289
            ++   P EY ++F+ KDVRPDGR L   R   +   SISTA GSALV+LG+TTV+ G+ A L  P +  P+KG    +V+L        R    ++ A V+++F+  ++  S  ++   LCI  GK+VW L   + C+D+DGN+ D+ +++ +AALRNV LP++ + +E +                             ++  +  + + S P++ SF +F    L+ DP++EEE + +  VT V    G+L  + KPGG +LSE   + C++RS  R  E  K+L
Sbjct:    5 FKTAQPVEYYRQFLKKDVRPDGRELGEIRSTIVNIGSISTAEGSALVKLGNTTVICGIKAELCTPTNDEPKKGFVVPNVDLPPLCSPRFRPGPPSEQAQVVSQFIADVLKDSKMVNHEDLCIAEGKIVWVLYCDMMCLDYDGNVIDACIISLLAALRNVALPSIEVDEETAK-------------------------PKLTSSTSSTMTVQSLPVSTSFAIFDNSILIADPTNEEENLATGVVTVVTNECGELCALHKPGGSSLSESQIQECVKRSFSRGDEIRKLL 266          
The following BLAST results are available for this feature:
BLAST of Ggra1423.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IJN11.350e-13568.81Exosome complex component RRP43 n=1 Tax=Gracilario... [more]
R7QL297.960e-9852.86Ribosomal RNA-processing protein 43 n=1 Tax=Chondr... [more]
A0A0L0HN851.640e-4334.59Ribosomal RNA-processing protein 43 n=2 Tax=Spizel... [more]
A9RPF42.460e-4337.68Ribosomal RNA-processing protein 43 n=1 Tax=Physco... [more]
exosome complex component RRP43-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE543AB4.880e-4335.54exosome complex component RRP43-like n=2 Tax=Halio... [more]
A0A7M5X9037.120e-4234.84Ribosomal RNA-processing protein 43 n=1 Tax=Clytia... [more]
R7TKM01.000e-4135.69Ribosomal RNA-processing protein 43 n=1 Tax=Capite... [more]
A7SQ482.720e-4136.68Ribosomal RNA-processing protein 43 n=1 Tax=Nemato... [more]
A0A8B7XGS12.800e-4134.15Ribosomal RNA-processing protein 43 n=1 Tax=Acanth... [more]
exosome complex component RRP43-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBA1865.250e-4133.45exosome complex component RRP43-like n=1 Tax=Sacco... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 217..280
e-value: 1.7E-5
score: 24.7
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 35..165
e-value: 8.8E-16
score: 58.6
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 3..292
e-value: 8.2E-71
score: 240.6
IPR033196Exosome complex component Rrp43PANTHERPTHR11097:SF9EXOSOME COMPLEX COMPONENT RRP43coord: 8..290
NoneNo IPR availablePANTHERPTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINcoord: 8..290
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 5..238
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 211..290

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:44294..45175 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1423.t1Ggra1423.t1Gracilaria gracilis GNS1m malemRNAtig00000844_pilon 44294..45175 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1423.t1 ID=Ggra1423.t1|Name=Ggra1423.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MVNEEAYRKIHPREYLKRFIDKDVRPDGRALSTARVFKLTTSSISTAVGS
ALVRLGSTTVLAGVTATLVRPDHGTPEKGIASVSVELLSTSCGESRIVRA
DDALVLTEFLRTLISPHIDLSKLCIEPGKLVWNLNLTVYCVDHDGNLEDS
VVLAAVAALRNVRLPTVRMTDEQSNGVENETENDLMNTEESEFDESGSVI
AVASARRTEFLELDSFPLTVSFQLFCEKALVDPSSEEEKVCSSRVTYVMR
PSGDLRGVLKPGGHNLSEELYKSCLRRSKKRVAEYMKVLKADG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015847ExoRNase_PH_dom2
IPR001247ExoRNase_PH_dom1
IPR027408PNPase/RNase_PH_dom_sf
IPR033196Rrp43
IPR020568Ribosomal_S5_D2-typ_fold
IPR036345ExoRNase_PH_dom2_sf