Ggra1423.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1423.t1
Unique NameGgra1423.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:44294..45175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_01962T0
PFAMsRNase_PH,RNase_PH_C
Max annot lvl4751|Fungi
KEGG koko:K12586
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017091,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034473,GO:0034475,GO:0034476,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1905354
Evalue6.14e-43
EggNOG OGsCOG2123@1|root,KOG1613@2759|Eukaryota,38CRS@33154|Opisthokonta,3NW1S@4751|Fungi
Description3' exoribonuclease family protein
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1423Ggra1423Gracilaria gracilis GNS1m malegenetig00000844_pilon 44294..45175 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1423.t1.start1Ggra1423.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 44294..44296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1423.t1.CDS1Ggra1423.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 44294..45175 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1423.t1.exon1Ggra1423.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 44294..45175 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1423.t1.stop1Ggra1423.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 45173..45175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1423.t1Ggra1423.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 44294..45175 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1423.t1 ID=Ggra1423.t1|Name=Ggra1423.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=294bp
MVNEEAYRKIHPREYLKRFIDKDVRPDGRALSTARVFKLTTSSISTAVGS
ALVRLGSTTVLAGVTATLVRPDHGTPEKGIASVSVELLSTSCGESRIVRA
DDALVLTEFLRTLISPHIDLSKLCIEPGKLVWNLNLTVYCVDHDGNLEDS
VVLAAVAALRNVRLPTVRMTDEQSNGVENETENDLMNTEESEFDESGSVI
AVASARRTEFLELDSFPLTVSFQLFCEKALVDPSSEEEKVCSSRVTYVMR
PSGDLRGVLKPGGHNLSEELYKSCLRRSKKRVAEYMKVLKADG*
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spliced messenger RNA

>Ggra1423.t1 ID=Ggra1423.t1|Name=Ggra1423.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000844_pilon:44294..45175+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAACGAAGAAGCTTATCGTAAAATACACCCACGGGAATACCTCAA
ACGATTCATCGACAAAGACGTTCGTCCGGATGGAAGAGCTCTTTCTACTG
CAAGGGTTTTCAAATTGACAACCAGTTCCATTAGCACAGCCGTGGGATCT
GCGTTGGTGAGACTAGGAAGTACAACTGTTCTTGCGGGCGTGACCGCAAC
TTTGGTGAGACCAGATCATGGAACTCCTGAAAAGGGGATTGCAAGTGTTT
CAGTTGAGCTTTTATCGACTAGCTGCGGGGAATCCAGAATTGTACGGGCA
GATGATGCACTTGTACTAACGGAGTTTCTTCGCACCCTCATCAGTCCACA
TATAGACTTGTCTAAGCTTTGCATTGAACCCGGAAAACTCGTCTGGAACT
TGAACTTGACAGTTTATTGCGTTGATCATGATGGGAACCTTGAGGACTCA
GTTGTTCTTGCAGCAGTTGCTGCTCTTCGTAACGTGCGCTTACCCACTGT
ACGAATGACAGATGAGCAATCCAATGGAGTGGAGAATGAAACTGAAAATG
ATTTGATGAACACTGAGGAGAGTGAATTCGATGAAAGTGGTTCTGTGATA
GCTGTTGCGTCGGCAAGAAGAACAGAGTTTCTCGAACTCGATAGTTTTCC
ACTGACGGTGTCTTTCCAACTCTTTTGCGAGAAGGCACTTGTGGATCCTT
CATCGGAAGAAGAGAAGGTTTGCTCATCACGAGTTACCTATGTAATGAGA
CCGTCCGGAGATCTAAGAGGAGTTCTCAAGCCTGGAGGGCACAACCTTTC
TGAAGAATTATATAAATCTTGTCTACGGCGGTCCAAGAAGAGAGTAGCAG
AGTACATGAAAGTACTCAAAGCAGATGGTTGA
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protein sequence of Ggra1423.t1

>Ggra1423.t1 ID=Ggra1423.t1|Name=Ggra1423.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MVNEEAYRKIHPREYLKRFIDKDVRPDGRALSTARVFKLTTSSISTAVGS
ALVRLGSTTVLAGVTATLVRPDHGTPEKGIASVSVELLSTSCGESRIVRA
DDALVLTEFLRTLISPHIDLSKLCIEPGKLVWNLNLTVYCVDHDGNLEDS
VVLAAVAALRNVRLPTVRMTDEQSNGVENETENDLMNTEESEFDESGSVI
AVASARRTEFLELDSFPLTVSFQLFCEKALVDPSSEEEKVCSSRVTYVMR
PSGDLRGVLKPGGHNLSEELYKSCLRRSKKRVAEYMKVLKADG*
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mRNA from alignment at tig00000844_pilon:44294..45175+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1423.t1 ID=Ggra1423.t1|Name=Ggra1423.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000844_pilon:44294..45175+ (Gracilaria gracilis GNS1m male)
ATGGTCAACGAAGAAGCTTATCGTAAAATACACCCACGGGAATACCTCAA
ACGATTCATCGACAAAGACGTTCGTCCGGATGGAAGAGCTCTTTCTACTG
CAAGGGTTTTCAAATTGACAACCAGTTCCATTAGCACAGCCGTGGGATCT
GCGTTGGTGAGACTAGGAAGTACAACTGTTCTTGCGGGCGTGACCGCAAC
TTTGGTGAGACCAGATCATGGAACTCCTGAAAAGGGGATTGCAAGTGTTT
CAGTTGAGCTTTTATCGACTAGCTGCGGGGAATCCAGAATTGTACGGGCA
GATGATGCACTTGTACTAACGGAGTTTCTTCGCACCCTCATCAGTCCACA
TATAGACTTGTCTAAGCTTTGCATTGAACCCGGAAAACTCGTCTGGAACT
TGAACTTGACAGTTTATTGCGTTGATCATGATGGGAACCTTGAGGACTCA
GTTGTTCTTGCAGCAGTTGCTGCTCTTCGTAACGTGCGCTTACCCACTGT
ACGAATGACAGATGAGCAATCCAATGGAGTGGAGAATGAAACTGAAAATG
ATTTGATGAACACTGAGGAGAGTGAATTCGATGAAAGTGGTTCTGTGATA
GCTGTTGCGTCGGCAAGAAGAACAGAGTTTCTCGAACTCGATAGTTTTCC
ACTGACGGTGTCTTTCCAACTCTTTTGCGAGAAGGCACTTGTGGATCCTT
CATCGGAAGAAGAGAAGGTTTGCTCATCACGAGTTACCTATGTAATGAGA
CCGTCCGGAGATCTAAGAGGAGTTCTCAAGCCTGGAGGGCACAACCTTTC
TGAAGAATTATATAAATCTTGTCTACGGCGGTCCAAGAAGAGAGTAGCAG
AGTACATGAAAGTACTCAAAGCAGATGGTTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:44294..45175+

>Ggra1423.t1 ID=Ggra1423.t1|Name=Ggra1423.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00000844_pilon:44294..45175+ (Gracilaria gracilis GNS1m male)
ATGGTCAACGAAGAAGCTTATCGTAAAATACACCCACGGGAATACCTCAA
ACGATTCATCGACAAAGACGTTCGTCCGGATGGAAGAGCTCTTTCTACTG
CAAGGGTTTTCAAATTGACAACCAGTTCCATTAGCACAGCCGTGGGATCT
GCGTTGGTGAGACTAGGAAGTACAACTGTTCTTGCGGGCGTGACCGCAAC
TTTGGTGAGACCAGATCATGGAACTCCTGAAAAGGGGATTGCAAGTGTTT
CAGTTGAGCTTTTATCGACTAGCTGCGGGGAATCCAGAATTGTACGGGCA
GATGATGCACTTGTACTAACGGAGTTTCTTCGCACCCTCATCAGTCCACA
TATAGACTTGTCTAAGCTTTGCATTGAACCCGGAAAACTCGTCTGGAACT
TGAACTTGACAGTTTATTGCGTTGATCATGATGGGAACCTTGAGGACTCA
GTTGTTCTTGCAGCAGTTGCTGCTCTTCGTAACGTGCGCTTACCCACTGT
ACGAATGACAGATGAGCAATCCAATGGAGTGGAGAATGAAACTGAAAATG
ATTTGATGAACACTGAGGAGAGTGAATTCGATGAAAGTGGTTCTGTGATA
GCTGTTGCGTCGGCAAGAAGAACAGAGTTTCTCGAACTCGATAGTTTTCC
ACTGACGGTGTCTTTCCAACTCTTTTGCGAGAAGGCACTTGTGGATCCTT
CATCGGAAGAAGAGAAGGTTTGCTCATCACGAGTTACCTATGTAATGAGA
CCGTCCGGAGATCTAAGAGGAGTTCTCAAGCCTGGAGGGCACAACCTTTC
TGAAGAATTATATAAATCTTGTCTACGGCGGTCCAAGAAGAGAGTAGCAG
AGTACATGAAAGTACTCAAAGCAGATGGTTGA
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