Ggra1422.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1422.t1
Unique NameGgra1422.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length180
Homology
BLAST of Ggra1422.t1 vs. uniprot
Match: A0A2V3IJL0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJL0_9FLOR)

HSP 1 Score: 193 bits (491), Expect = 5.450e-60
Identity = 104/182 (57.14%), Postives = 127/182 (69.78%), Query Frame = 0
Query:    1 MEAFVRAPLPTFQHSNRFPCPHTSRRPQPRTVIVARSLDSYREGQRFA---ERDSSQNPSFSERPVPPVKHMMSLLKALVQLNVASSDTCELLIRNGRVRVNGKTVREHKARVDRFQDMLSISGTDYGTVQDGEPSGFPDTELEPRVQRDFRSSIPEDGLDKKYSRRVDGGFYSTRRYLGGK 179
            M AFV  PLPT   +NR  CP + RR   R V  ARSLDSYREG+RF+   ER   + P FS     P+K  + L+KAL +LNVAS +TC LLIR GRV VNGK +R+ KAR++   DMLSI+G +YGT++DGEP   PD E  PR QRD R+ I E+GLDKKYSRR+D GFYS++RY GGK
Sbjct:    1 MNAFVTVPLPTGLQANRSTCPLSKRRFPSRLVPTARSLDSYREGRRFSYEDERPKREKP-FSRSETAPLKKKVILVKALSKLNVASFETCGLLIRTGRVLVNGKVIRDEKARINVETDMLSINGMEYGTLRDGEPVAPPDMEFAPRTQRD-RARIVEEGLDKKYSRRIDRGFYSSKRYAGGK 180          
BLAST of Ggra1422.t1 vs. uniprot
Match: A0A1X6P601 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P601_PORUM)

HSP 1 Score: 69.3 bits (168), Expect = 9.950e-11
Identity = 49/142 (34.51%), Postives = 67/142 (47.18%), Query Frame = 0
Query:   64 PPVKHMMSLLKALVQLNVASSDTCELLIRNGRVRVNGKTVREHKARVDRFQDMLS--------ISGTDYGTVQDGEPSGFPDTELE----PRVQRDFRSS---IPEDG-----------LDKKYSRRVDGGFYSTRRYLGGK 179
            PPV    +LLK LV  +VASSDTC  LI NG V V+G    + + +V     ++         +   D    + G P G  D   +    PRV+RD   +   +P +G           LDKKY+ +VDGGFY+ RR    K
Sbjct:  193 PPVIKSRTLLKTLVSRSVASSDTCASLIANGVVLVDGVVETDGRRKVPADAQLVVRGVRVKAVVGDLDRDAPRAGRPGGEADAAADGVRLPRVRRDLSGNDWKLPTEGRADKGGRRGVKLDKKYTWKVDGGFYAGRRRAADK 334          
BLAST of Ggra1422.t1 vs. uniprot
Match: A0A7S3E5K0 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E5K0_9RHOD)

HSP 1 Score: 64.3 bits (155), Expect = 1.190e-9
Identity = 46/133 (34.59%), Postives = 64/133 (48.12%), Query Frame = 0
Query:   64 PPVKHMMSLLKALVQLNVASSDTCELLIRNGRVRVNGKTVREHKARVDRFQDMLSISGTDYGTVQD-----------GEPSGFP--------DTELEPRVQRDFRSSIP----EDGLDKKYSRRVDGGFYSTR 173
            P +     LL AL    +A+SDTCE LIR GRV VNG  +++ K  V+  +D + ++G    + Q            G+             D ++ PR QRDFRSS      E+G +K   R +DGGF S R
Sbjct:   38 PVLPENQKLLNALKVFKIAASDTCEYLIRAGRVEVNGNVIKDSKFAVNARKDKIVVNGGWINSKQSIDLLERTKPKKGKXXXXXXXXXVTDQDVDILPRGQRDFRSSKVVKRNEEG-EKFKGREIDGGFSSKR 169          
BLAST of Ggra1422.t1 vs. uniprot
Match: A0A7S3E6T4 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E6T4_9RHOD)

HSP 1 Score: 57.4 bits (137), Expect = 4.380e-7
Identity = 38/112 (33.93%), Postives = 53/112 (47.32%), Query Frame = 0
Query:   64 PPVKHMMSLLKALVQLNVASSDTCELLIRNGRVRVNGKTVREHKARVDRFQDMLSISGTDYGTVQD-----------GEPSGFP--------DTELEPRVQRDFRSSIPEDG 156
            P +     LL AL    +A+SDTCE LIR GRV VNG  +++ K  V+  +D + ++G    + Q            G+             D ++ PR QRDFRSS   DG
Sbjct:   38 PVLPENQKLLNALKVFKIAASDTCEYLIRAGRVEVNGNVIKDSKFAVNARKDKIVVNGGWINSKQSIDLLERTKPKKGKXXXXXXXXXVTDQDVDILPRGQRDFRSSKYVDG 149          
BLAST of Ggra1422.t1 vs. uniprot
Match: A0A7S3E703 (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E703_9RHOD)

HSP 1 Score: 57.4 bits (137), Expect = 1.180e-6
Identity = 38/112 (33.93%), Postives = 53/112 (47.32%), Query Frame = 0
Query:   64 PPVKHMMSLLKALVQLNVASSDTCELLIRNGRVRVNGKTVREHKARVDRFQDMLSISGTDYGTVQD-----------GEPSGFP--------DTELEPRVQRDFRSSIPEDG 156
            P +     LL AL    +A+SDTCE LIR GRV VNG  +++ K  V+  +D + ++G    + Q            G+             D ++ PR QRDFRSS   DG
Sbjct:  132 PVLPENQKLLNALKVFKIAASDTCEYLIRAGRVEVNGNVIKDSKFAVNARKDKIVVNGGWINSKQSIDLLERTKPKKGKXXXXXXXXXVTDQDVDILPRGQRDFRSSKYVDG 243          
The following BLAST results are available for this feature:
BLAST of Ggra1422.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IJL05.450e-6057.14Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6P6019.950e-1134.51Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S3E5K01.190e-934.59Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3E6T44.380e-733.93Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3E7031.180e-633.93Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 66..123
e-value: 6.8E-7
score: 30.5
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 72..111
e-value: 3.1E-5
score: 23.6
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 70..121
e-value: 1.48681E-4
score: 36.4586
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..63
NoneNo IPR availablePROSITEPS50889S4coord: 70..153
score: 10.971482
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 69..121

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:41951..42490 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1422.t1Ggra1422.t1Gracilaria gracilis GNS1m malemRNAtig00000844_pilon 41951..42490 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1422.t1 ID=Ggra1422.t1|Name=Ggra1422.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=180bp
MEAFVRAPLPTFQHSNRFPCPHTSRRPQPRTVIVARSLDSYREGQRFAER
DSSQNPSFSERPVPPVKHMMSLLKALVQLNVASSDTCELLIRNGRVRVNG
KTVREHKARVDRFQDMLSISGTDYGTVQDGEPSGFPDTELEPRVQRDFRS
SIPEDGLDKKYSRRVDGGFYSTRRYLGGK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036986S4_RNA-bd_sf
IPR002942S4_RNA-bd