Ggra1422.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1422.t1
Unique NameGgra1422.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:41951..42490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1203622.HMPREF1290_01733
Preferred namerluB
PFAMsPseudoU_synth_2,S4
Max annot lvl201174|Actinobacteria
KEGG koko:K06178,ko:K06183
GOsGO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Evalue0.000142
EggNOG OGsCOG1187@1|root,COG1187@2|Bacteria,2GJ4N@201174|Actinobacteria,22KIK@1653|Corynebacteriaceae
EC5.4.99.19,5.4.99.22
DescriptionBelongs to the pseudouridine synthase RsuA family
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1422Ggra1422Gracilaria gracilis GNS1m malegenetig00000844_pilon 41951..42490 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1422.t1.start1Ggra1422.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 41951..41953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1422.t1.CDS1Ggra1422.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 41951..42490 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1422.t1.exon1Ggra1422.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 41951..42490 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1422.t1.stop1Ggra1422.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 42488..42490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1422.t1Ggra1422.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 41951..42490 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1422.t1 ID=Ggra1422.t1|Name=Ggra1422.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=180bp
MEAFVRAPLPTFQHSNRFPCPHTSRRPQPRTVIVARSLDSYREGQRFAER
DSSQNPSFSERPVPPVKHMMSLLKALVQLNVASSDTCELLIRNGRVRVNG
KTVREHKARVDRFQDMLSISGTDYGTVQDGEPSGFPDTELEPRVQRDFRS
SIPEDGLDKKYSRRVDGGFYSTRRYLGGK*
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spliced messenger RNA

>Ggra1422.t1 ID=Ggra1422.t1|Name=Ggra1422.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000844_pilon:41951..42490+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCGTTTGTACGAGCTCCGCTACCAACATTCCAGCACTCGAATCG
CTTTCCGTGTCCGCACACTTCGAGACGTCCACAACCGCGCACAGTCATTG
TGGCCAGATCTCTAGATTCGTATCGAGAGGGCCAGCGTTTTGCAGAACGG
GATTCATCACAGAACCCATCGTTCTCTGAACGCCCTGTTCCCCCGGTGAA
ACATATGATGAGTCTTTTGAAAGCGCTCGTGCAACTGAACGTGGCCTCAT
CAGATACTTGTGAACTACTGATTCGAAACGGTCGTGTGCGAGTCAATGGA
AAAACCGTCAGAGAGCATAAGGCGCGTGTCGACAGATTCCAAGATATGTT
ATCGATTAGTGGCACTGACTATGGAACCGTGCAAGATGGTGAGCCTTCTG
GTTTTCCCGACACCGAACTTGAGCCTAGAGTACAGAGGGATTTTAGATCG
TCGATTCCGGAGGATGGTCTGGACAAGAAGTATAGTCGCCGTGTTGATGG
CGGCTTTTATTCCACAAGGAGATATCTTGGTGGTAAATGA
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protein sequence of Ggra1422.t1

>Ggra1422.t1 ID=Ggra1422.t1|Name=Ggra1422.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=180bp
MEAFVRAPLPTFQHSNRFPCPHTSRRPQPRTVIVARSLDSYREGQRFAER
DSSQNPSFSERPVPPVKHMMSLLKALVQLNVASSDTCELLIRNGRVRVNG
KTVREHKARVDRFQDMLSISGTDYGTVQDGEPSGFPDTELEPRVQRDFRS
SIPEDGLDKKYSRRVDGGFYSTRRYLGGK*
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mRNA from alignment at tig00000844_pilon:41951..42490+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1422.t1 ID=Ggra1422.t1|Name=Ggra1422.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000844_pilon:41951..42490+ (Gracilaria gracilis GNS1m male)
ATGGAAGCGTTTGTACGAGCTCCGCTACCAACATTCCAGCACTCGAATCG
CTTTCCGTGTCCGCACACTTCGAGACGTCCACAACCGCGCACAGTCATTG
TGGCCAGATCTCTAGATTCGTATCGAGAGGGCCAGCGTTTTGCAGAACGG
GATTCATCACAGAACCCATCGTTCTCTGAACGCCCTGTTCCCCCGGTGAA
ACATATGATGAGTCTTTTGAAAGCGCTCGTGCAACTGAACGTGGCCTCAT
CAGATACTTGTGAACTACTGATTCGAAACGGTCGTGTGCGAGTCAATGGA
AAAACCGTCAGAGAGCATAAGGCGCGTGTCGACAGATTCCAAGATATGTT
ATCGATTAGTGGCACTGACTATGGAACCGTGCAAGATGGTGAGCCTTCTG
GTTTTCCCGACACCGAACTTGAGCCTAGAGTACAGAGGGATTTTAGATCG
TCGATTCCGGAGGATGGTCTGGACAAGAAGTATAGTCGCCGTGTTGATGG
CGGCTTTTATTCCACAAGGAGATATCTTGGTGGTAAATGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:41951..42490+

>Ggra1422.t1 ID=Ggra1422.t1|Name=Ggra1422.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=540bp|location=Sequence derived from alignment at tig00000844_pilon:41951..42490+ (Gracilaria gracilis GNS1m male)
ATGGAAGCGTTTGTACGAGCTCCGCTACCAACATTCCAGCACTCGAATCG
CTTTCCGTGTCCGCACACTTCGAGACGTCCACAACCGCGCACAGTCATTG
TGGCCAGATCTCTAGATTCGTATCGAGAGGGCCAGCGTTTTGCAGAACGG
GATTCATCACAGAACCCATCGTTCTCTGAACGCCCTGTTCCCCCGGTGAA
ACATATGATGAGTCTTTTGAAAGCGCTCGTGCAACTGAACGTGGCCTCAT
CAGATACTTGTGAACTACTGATTCGAAACGGTCGTGTGCGAGTCAATGGA
AAAACCGTCAGAGAGCATAAGGCGCGTGTCGACAGATTCCAAGATATGTT
ATCGATTAGTGGCACTGACTATGGAACCGTGCAAGATGGTGAGCCTTCTG
GTTTTCCCGACACCGAACTTGAGCCTAGAGTACAGAGGGATTTTAGATCG
TCGATTCCGGAGGATGGTCTGGACAAGAAGTATAGTCGCCGTGTTGATGG
CGGCTTTTATTCCACAAGGAGATATCTTGGTGGTAAATGA
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