Ggra1415.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1415.t1
Unique NameGgra1415.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length234
Homology
[Close]
BLAST of Ggra1415.t1 vs. uniprot
Match: A0A2V3IJT2 (Actin-related protein 8 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJT2_9FLOR)

HSP 1 Score: 234 bits (597), Expect = 1.660e-69
Identity = 111/172 (64.53%), Postives = 140/172 (81.40%), Query Frame = 0 
Query:   44 PQLRCQHLKLRPGTRLKKPEPKDVVVIAFGSSAIRYGFASDSTPRIVFPAVAFLRSDESIADPTSEPFRIPVHHSRSDEELKAARVVFDEVREAVAKELALSERRRGGGRPVPWKAAIEVVPGMSDAAKPAKLKEENVPVLVGHDVELLLRDEDRAKSYDIVMPIWDGKLFL 215
            P+LR Q+L LR   R +KP PKDV+V+AFGSSAIRYGFASDSTPRIVFPAVAF R   ++A+P+  PFR+P +  RS++ELKA+RV FD+VR+ VA+ELALSERRRGGGRP+PWKAA+E+VP  S+  K   + E+N  VLVGH+VE L+RDE+RAK+YDI+ P+WDGKL  
Sbjct:   38 PRLRAQNLTLRTDVRQRKPAPKDVIVLAFGSSAIRYGFASDSTPRIVFPAVAFPRKQSALANPSIRPFRVPSYVPRSEDELKASRVTFDKVRDEVAQELALSERRRGGGRPIPWKAAVELVPEESERLKQENVIEDNTRVLVGHEVEFLIRDEERAKNYDIIFPMWDGKLLF 209
[Close]
BLAST of Ggra1415.t1 vs. uniprot
Match: R7QJ43 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ43_CHOCR)

HSP 1 Score: 166 bits (421), Expect = 2.450e-44
Identity = 87/172 (50.58%), Postives = 112/172 (65.12%), Query Frame = 0 
Query:   51 LKLRPGTRLKKPEPKDVVVIAFGSSAIRYGFASDSTPRIVFPAVAFLRSDESIADPTSEPFRIPVHHSRSDEELKAARVVFDEVREAVAKELALSERRRGGGRPVPWKAAIEVVPGMSDAAK--PAKLKEENVP-----VLVGHDVELLLRDEDRAKSYDIVMPIWDGKLFL 215
            + + P  + +KP P +VVV+AFGS  IRYGFA D+TPR +FPAVAF R  E+IADP   P  IP    R+ E+++ AR VF E+R  +  E+AL ERRRGGGRP PW   IE +     AA+  P    ++  P     VLVG DVELL+RD+++AK YDIV PIWDGK+  
Sbjct:    1 MAVPPDVKERKPPPANVVVLAFGSHGIRYGFAVDTTPRRLFPAVAFPRRPEAIADPAKAPVCIPTFRRRAPEDVQRARAVFAEMRNTIEVEMALRERRRGGGRPTPWTVVIEPISAPQPAAEADPTPTVKQPHPIHGSKVLVGRDVELLVRDKEKAKLYDIVFPIWDGKVLF 172
The following BLAST results are available for this feature:
BLAST of Ggra1415.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IJT21.660e-6964.53Actin-related protein 8 n=1 Tax=Gracilariopsis cho... [more]
R7QJ432.450e-4450.58Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.420.40coord: 59..227
e-value: 2.9E-6
score: 29.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..41
IPR004000Actin familyPFAMPF00022Actincoord: 65..104
e-value: 8.4E-5
score: 21.4
IPR043129ATPase, nucleotide binding domainSUPERFAMILY53067Actin-like ATPase domaincoord: 64..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:16979..17745 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1415.t1Ggra1415.t1Gracilaria gracilis GNS1m malemRNAtig00000844_pilon 16979..17745 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1415.t1 ID=Ggra1415.t1|Name=Ggra1415.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=234bp
MDAEEEDRPVSLNETGALSVKDENGVLPVPDVKDDEGAQSHENPQLRCQH
LKLRPGTRLKKPEPKDVVVIAFGSSAIRYGFASDSTPRIVFPAVAFLRSD
ESIADPTSEPFRIPVHHSRSDEELKAARVVFDEVREAVAKELALSERRRG
GGRPVPWKAAIEVVPGMSDAAKPAKLKEENVPVLVGHDVELLLRDEDRAK
SYDIVMPIWDGKLFLPVNFRQKKPKEKGVEVSD*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004000Actin
IPR043129ATPase_NBD