Ggra1415.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1415.t1
Unique NameGgra1415.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:16979..17745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1415Ggra1415Gracilaria gracilis GNS1m malegenetig00000844_pilon 16979..19030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1415.t1Ggra1415.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 16979..17745 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1415.t1.start1Ggra1415.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 16979..16981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1415.t1.CDS1Ggra1415.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 16979..17619 +
Ggra1415.t1.CDS2Ggra1415.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 17685..17745 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1415.t1.exon1Ggra1415.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 16979..17619 +
Ggra1415.t1.exon2Ggra1415.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 17685..17745 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1415.t1.intron1Ggra1415.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 17620..17684 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1415.t1.stop1Ggra1415.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 17743..17745 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1415.t1 ID=Ggra1415.t1|Name=Ggra1415.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=234bp
MDAEEEDRPVSLNETGALSVKDENGVLPVPDVKDDEGAQSHENPQLRCQH
LKLRPGTRLKKPEPKDVVVIAFGSSAIRYGFASDSTPRIVFPAVAFLRSD
ESIADPTSEPFRIPVHHSRSDEELKAARVVFDEVREAVAKELALSERRRG
GGRPVPWKAAIEVVPGMSDAAKPAKLKEENVPVLVGHDVELLLRDEDRAK
SYDIVMPIWDGKLFLPVNFRQKKPKEKGVEVSD*
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spliced messenger RNA

>Ggra1415.t1 ID=Ggra1415.t1|Name=Ggra1415.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000844_pilon:16979..17745+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCGGAAGAGGAAGACAGACCTGTTTCGTTGAACGAAACTGGGGC
GTTATCAGTGAAAGACGAAAATGGCGTTCTTCCAGTTCCGGATGTAAAGG
ATGATGAAGGTGCTCAAAGTCATGAGAACCCTCAGTTACGTTGCCAACAC
CTCAAGCTGCGACCAGGCACTCGTTTGAAGAAGCCAGAGCCAAAGGATGT
CGTTGTTATTGCATTTGGATCTTCCGCTATTCGATACGGATTTGCCTCAG
ATTCGACTCCAAGAATTGTATTTCCGGCTGTTGCTTTTTTGCGAAGTGAT
GAATCCATTGCAGATCCTACAAGTGAACCATTTCGTATTCCAGTCCACCA
TTCCCGGTCCGATGAAGAACTGAAAGCGGCTCGGGTGGTTTTTGACGAGG
TCCGCGAAGCAGTCGCCAAAGAGCTCGCACTGAGCGAAAGACGTCGAGGA
GGTGGTCGGCCAGTTCCTTGGAAGGCTGCAATTGAGGTTGTACCCGGAAT
GTCAGACGCAGCAAAACCTGCAAAACTGAAGGAAGAAAATGTTCCCGTAT
TAGTCGGTCACGATGTCGAACTATTGCTTCGTGATGAAGACAGAGCCAAG
AGCTACGATATAGTTATGCCGATTTGGGACGGAAAACTTTTTCTCCCAGT
TAATTTCCGACAGAAGAAACCCAAGGAGAAAGGGGTCGAAGTTTCGGACT
AA
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protein sequence of Ggra1415.t1

>Ggra1415.t1 ID=Ggra1415.t1|Name=Ggra1415.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=234bp
MDAEEEDRPVSLNETGALSVKDENGVLPVPDVKDDEGAQSHENPQLRCQH
LKLRPGTRLKKPEPKDVVVIAFGSSAIRYGFASDSTPRIVFPAVAFLRSD
ESIADPTSEPFRIPVHHSRSDEELKAARVVFDEVREAVAKELALSERRRG
GGRPVPWKAAIEVVPGMSDAAKPAKLKEENVPVLVGHDVELLLRDEDRAK
SYDIVMPIWDGKLFLPVNFRQKKPKEKGVEVSD*
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mRNA from alignment at tig00000844_pilon:16979..17745+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1415.t1 ID=Ggra1415.t1|Name=Ggra1415.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=767bp|location=Sequence derived from alignment at tig00000844_pilon:16979..17745+ (Gracilaria gracilis GNS1m male)
ATGGATGCGGAAGAGGAAGACAGACCTGTTTCGTTGAACGAAACTGGGGC
GTTATCAGTGAAAGACGAAAATGGCGTTCTTCCAGTTCCGGATGTAAAGG
ATGATGAAGGTGCTCAAAGTCATGAGAACCCTCAGTTACGTTGCCAACAC
CTCAAGCTGCGACCAGGCACTCGTTTGAAGAAGCCAGAGCCAAAGGATGT
CGTTGTTATTGCATTTGGATCTTCCGCTATTCGATACGGATTTGCCTCAG
ATTCGACTCCAAGAATTGTATTTCCGGCTGTTGCTTTTTTGCGAAGTGAT
GAATCCATTGCAGATCCTACAAGTGAACCATTTCGTATTCCAGTCCACCA
TTCCCGGTCCGATGAAGAACTGAAAGCGGCTCGGGTGGTTTTTGACGAGG
TCCGCGAAGCAGTCGCCAAAGAGCTCGCACTGAGCGAAAGACGTCGAGGA
GGTGGTCGGCCAGTTCCTTGGAAGGCTGCAATTGAGGTTGTACCCGGAAT
GTCAGACGCAGCAAAACCTGCAAAACTGAAGGAAGAAAATGTTCCCGTAT
TAGTCGGTCACGATGTCGAACTATTGCTTCGTGATGAAGACAGAGCCAAG
AGCTACGATATAGTTATGCCGATTTGGGACGGAAAACTTTTGTTCGATTG
TGGAGCTCCTGCAAGTTTGATACGAAAATCTTTAGATGTTCTCATCTCTC
ACATAGTCTCCCAGTTAATTTCCGACAGAAGAAACCCAAGGAGAAAGGGG
TCGAAGTTTCGGACTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:16979..17745+

>Ggra1415.t1 ID=Ggra1415.t1|Name=Ggra1415.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00000844_pilon:16979..17745+ (Gracilaria gracilis GNS1m male)
ATGGATGCGGAAGAGGAAGACAGACCTGTTTCGTTGAACGAAACTGGGGC
GTTATCAGTGAAAGACGAAAATGGCGTTCTTCCAGTTCCGGATGTAAAGG
ATGATGAAGGTGCTCAAAGTCATGAGAACCCTCAGTTACGTTGCCAACAC
CTCAAGCTGCGACCAGGCACTCGTTTGAAGAAGCCAGAGCCAAAGGATGT
CGTTGTTATTGCATTTGGATCTTCCGCTATTCGATACGGATTTGCCTCAG
ATTCGACTCCAAGAATTGTATTTCCGGCTGTTGCTTTTTTGCGAAGTGAT
GAATCCATTGCAGATCCTACAAGTGAACCATTTCGTATTCCAGTCCACCA
TTCCCGGTCCGATGAAGAACTGAAAGCGGCTCGGGTGGTTTTTGACGAGG
TCCGCGAAGCAGTCGCCAAAGAGCTCGCACTGAGCGAAAGACGTCGAGGA
GGTGGTCGGCCAGTTCCTTGGAAGGCTGCAATTGAGGTTGTACCCGGAAT
GTCAGACGCAGCAAAACCTGCAAAACTGAAGGAAGAAAATGTTCCCGTAT
TAGTCGGTCACGATGTCGAACTATTGCTTCGTGATGAAGACAGAGCCAAG
AGCTACGATATAGTTATGCCGATTTGGGACGGAAAACTTTTTCTCCCAGT
TAATTTCCGACAGAAGAAACCCAAGGAGAAAGGGGTCGAAGTTTCGGACT
AA
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