Ggra1406.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1406.t1
Unique NameGgra1406.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length170
Homology
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BLAST of Ggra1406.t1 vs. uniprot
Match: A0A2V3IH53 (LITAF domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH53_9FLOR)

HSP 1 Score: 148 bits (373), Expect = 7.230e-43
Identity = 63/83 (75.90%), Postives = 70/83 (84.34%), Query Frame = 0 
Query:   86 AQTYTGTAYHAPPPSNLGHKPVVLVCSQCNHRGPSVVTSDNCTAINWICTLVFCLCCFFCIPATAKHTHTCSKCGGYLGSNNV 168
            AQ  +   Y+AP P+NL + PVVL CSQC+HRGPS VTSDNCTA+NWICTL  CLCCFFCIPATAKHTHTCS CGGYLGSNN+
Sbjct:   51 AQKASAPPYYAPAPNNLSNNPVVLTCSQCHHRGPSTVTSDNCTAVNWICTLTLCLCCFFCIPATAKHTHTCSNCGGYLGSNNM 133
The following BLAST results are available for this feature:
BLAST of Ggra1406.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IH537.230e-4375.90LITAF domain-containing protein n=1 Tax=Gracilario... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006629LPS-induced tumour necrosis factor alpha factorSMARTSM00714litafcoord: 106..168
e-value: 0.008
score: 17.5
IPR006629LPS-induced tumour necrosis factor alpha factorPFAMPF10601zf-LITAF-likecoord: 105..165
e-value: 1.6E-6
score: 28.3
IPR006629LPS-induced tumour necrosis factor alpha factorPROSITEPS51837LITAFcoord: 90..168
score: 9.136538
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..95
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 149..169
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..128
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 129..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000169_piloncontigtig00000169_pilon:204627..205230 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1406.t1Ggra1406.t1Gracilaria gracilis GNS1m malemRNAtig00000169_pilon 204627..205230 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1406.t1 ID=Ggra1406.t1|Name=Ggra1406.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=170bp
MTGVSRHPPPTDPSAVPVSSPSTSPIYPYATKHMEPTAPPAPPGVEPFPQ
QMPYSPPHPQPPAQPQAQEPTKPDPVASPQGARTGAQTYTGTAYHAPPPS
NLGHKPVVLVCSQCNHRGPSVVTSDNCTAINWICTLVFCLCCFFCIPATA
KHTHTCSKCGGYLGSNNVT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006629LITAF