Ggra1406.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1406.t1
Unique NameGgra1406.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000169_piloncontigtig00000169_pilon:204627..205230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13037.EHJ66217
PFAMszf-LITAF-like
Max annot lvl33208|Metazoa
Evalue0.000298
EggNOG OGs2F65S@1|root,2T77K@2759|Eukaryota,391EP@33154|Opisthokonta,3C71I@33208|Metazoa,3DN1G@33213|Bilateria,424GX@6656|Arthropoda,3T15I@50557|Insecta,449PW@7088|Lepidoptera
DescriptionLITAF-like zinc ribbon domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1406Ggra1406Gracilaria gracilis GNS1m malegenetig00000169_pilon 204627..205230 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1406.t1Ggra1406.t1Gracilaria gracilis GNS1m malepolypeptidetig00000169_pilon 204627..205230 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1406.t1.start1Ggra1406.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000169_pilon 204627..204629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1406.t1.CDS1Ggra1406.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000169_pilon 204627..205026 +
Ggra1406.t1.CDS2Ggra1406.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000169_pilon 205121..205230 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1406.t1.exon1Ggra1406.t1.exon1Gracilaria gracilis GNS1m maleexontig00000169_pilon 204627..205026 +
Ggra1406.t1.exon2Ggra1406.t1.exon2Gracilaria gracilis GNS1m maleexontig00000169_pilon 205121..205230 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1406.t1.intron1Ggra1406.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000169_pilon 205027..205120 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1406.t1.stop1Ggra1406.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000169_pilon 205228..205230 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1406.t1 ID=Ggra1406.t1|Name=Ggra1406.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=170bp
MTGVSRHPPPTDPSAVPVSSPSTSPIYPYATKHMEPTAPPAPPGVEPFPQ
QMPYSPPHPQPPAQPQAQEPTKPDPVASPQGARTGAQTYTGTAYHAPPPS
NLGHKPVVLVCSQCNHRGPSVVTSDNCTAINWICTLVFCLCCFFCIPATA
KHTHTCSKCGGYLGSNNVT*
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spliced messenger RNA

>Ggra1406.t1 ID=Ggra1406.t1|Name=Ggra1406.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp|location=Sequence derived from alignment at tig00000169_pilon:204627..205230+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGGCGTTTCACGGCATCCACCGCCCACTGACCCGTCCGCAGTGCC
AGTGTCCTCGCCGTCCACGTCGCCGATCTACCCGTACGCCACGAAGCACA
TGGAACCCACCGCGCCGCCCGCGCCGCCAGGCGTGGAACCATTTCCGCAG
CAAATGCCGTACTCGCCCCCGCACCCACAGCCGCCCGCTCAACCCCAAGC
GCAGGAGCCGACGAAGCCAGACCCAGTGGCCTCGCCGCAGGGCGCGCGCA
CAGGCGCTCAGACTTACACGGGGACGGCTTACCATGCGCCGCCGCCCTCA
AATCTTGGCCACAAACCTGTGGTACTCGTCTGCTCGCAGTGCAACCACCG
CGGACCGTCCGTCGTGACGTCCGACAATTGCACTGCCATCAACTGGATTT
GTACTCTTGTTTTCTGCCTGTGCTGCTTCTTCTGCATCCCGGCTACCGCC
AAGCATACTCATACTTGCTCCAAATGCGGCGGCTATCTTGGCTCAAACAA
TGTGACCTAG
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protein sequence of Ggra1406.t1

>Ggra1406.t1 ID=Ggra1406.t1|Name=Ggra1406.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=170bp
MTGVSRHPPPTDPSAVPVSSPSTSPIYPYATKHMEPTAPPAPPGVEPFPQ
QMPYSPPHPQPPAQPQAQEPTKPDPVASPQGARTGAQTYTGTAYHAPPPS
NLGHKPVVLVCSQCNHRGPSVVTSDNCTAINWICTLVFCLCCFFCIPATA
KHTHTCSKCGGYLGSNNVT*
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mRNA from alignment at tig00000169_pilon:204627..205230+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1406.t1 ID=Ggra1406.t1|Name=Ggra1406.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=604bp|location=Sequence derived from alignment at tig00000169_pilon:204627..205230+ (Gracilaria gracilis GNS1m male)
ATGACAGGCGTTTCACGGCATCCACCGCCCACTGACCCGTCCGCAGTGCC
AGTGTCCTCGCCGTCCACGTCGCCGATCTACCCGTACGCCACGAAGCACA
TGGAACCCACCGCGCCGCCCGCGCCGCCAGGCGTGGAACCATTTCCGCAG
CAAATGCCGTACTCGCCCCCGCACCCACAGCCGCCCGCTCAACCCCAAGC
GCAGGAGCCGACGAAGCCAGACCCAGTGGCCTCGCCGCAGGGCGCGCGCA
CAGGCGCTCAGACTTACACGGGGACGGCTTACCATGCGCCGCCGCCCTCA
AATCTTGGCCACAAACCTGTGGTACTCGTCTGCTCGCAGTGCAACCACCG
CGGACCGTCCGTCGTGACGTCCGACAATTGCACTGCCATCAACTGGATTT
GTGCGTATTCCTCCTGTCTCGAAACACAGTATGATTTGCATCAGGCTCCC
TTCTGACACTTTCTTTCACATTTGTGCGTCGCTTTGTTACGCAGGTACTC
TTGTTTTCTGCCTGTGCTGCTTCTTCTGCATCCCGGCTACCGCCAAGCAT
ACTCATACTTGCTCCAAATGCGGCGGCTATCTTGGCTCAAACAATGTGAC
CTAG
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Coding sequence (CDS) from alignment at tig00000169_pilon:204627..205230+

>Ggra1406.t1 ID=Ggra1406.t1|Name=Ggra1406.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=510bp|location=Sequence derived from alignment at tig00000169_pilon:204627..205230+ (Gracilaria gracilis GNS1m male)
ATGACAGGCGTTTCACGGCATCCACCGCCCACTGACCCGTCCGCAGTGCC
AGTGTCCTCGCCGTCCACGTCGCCGATCTACCCGTACGCCACGAAGCACA
TGGAACCCACCGCGCCGCCCGCGCCGCCAGGCGTGGAACCATTTCCGCAG
CAAATGCCGTACTCGCCCCCGCACCCACAGCCGCCCGCTCAACCCCAAGC
GCAGGAGCCGACGAAGCCAGACCCAGTGGCCTCGCCGCAGGGCGCGCGCA
CAGGCGCTCAGACTTACACGGGGACGGCTTACCATGCGCCGCCGCCCTCA
AATCTTGGCCACAAACCTGTGGTACTCGTCTGCTCGCAGTGCAACCACCG
CGGACCGTCCGTCGTGACGTCCGACAATTGCACTGCCATCAACTGGATTT
GTACTCTTGTTTTCTGCCTGTGCTGCTTCTTCTGCATCCCGGCTACCGCC
AAGCATACTCATACTTGCTCCAAATGCGGCGGCTATCTTGGCTCAAACAA
TGTGACCTAG
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