Ggra1202.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1202.t1
Unique NameGgra1202.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length313
Homology
BLAST of Ggra1202.t1 vs. uniprot
Match: A0A2V3IPG6 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPG6_9FLOR)

HSP 1 Score: 90.9 bits (224), Expect = 1.790e-17
Identity = 46/81 (56.79%), Postives = 65/81 (80.25%), Query Frame = 0
Query:    8 TTQSTKPTIQGEMHAVFELLFELYFKSRRDLHKQNHELAMRAALPSISKWNQQLMRRHKASQLQRSQFSKTFAIVHALLRR 88
            TTQ+ + TIQ ++ AV +LL +LY KS RD+ K+N ELA+R +LP+ISKWNQQL++ HKAS+L++S+ SK  A+V ALL+R
Sbjct:   95 TTQNMESTIQVQIDAVSDLLSDLYTKSERDIVKRNEELAIRTSLPTISKWNQQLIKGHKASKLRQSEISKELAVVDALLKR 175          
BLAST of Ggra1202.t1 vs. uniprot
Match: A0A2V3INL2 (RuvB-like helicase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INL2_9FLOR)

HSP 1 Score: 82.0 bits (201), Expect = 9.090e-14
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 0
Query:  241 SREDSALGGGKADNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSFISKMISS 307
            SR+   L     D G +K  VREQI +KV++W EEGKAELVP VLF+DEV++LDIECFSFI+K I S
Sbjct:  237 SRQQGFLALFSGDTGEIKSEVREQIDIKVAEWREEGKAELVPGVLFIDEVHMLDIECFSFINKAIES 303          
BLAST of Ggra1202.t1 vs. uniprot
Match: A0A822B798 (RuvB-like helicase n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A822B798_9BILA)

HSP 1 Score: 76.6 bits (187), Expect = 1.010e-13
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 0
Query:  241 SREDSALGGGKADNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSFISKMISS 307
            SR    L     D G +K  VREQI  KV++W EEGKAE+VP VLF+DEV++LDIECFSF+++ + S
Sbjct:    4 SRSQGFLALFSGDTGEIKSEVREQINDKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALES 70          
BLAST of Ggra1202.t1 vs. uniprot
Match: A0A7S1T119 (RuvB-like helicase (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T119_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 3.810e-13
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 0
Query:  253 DNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSFISK 303
            D G ++  VREQI MKV++W EEGKAE+VP VLF+DEV++LDIECFSF+++
Sbjct:   18 DTGEIRHEVREQIDMKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNR 68          
BLAST of Ggra1202.t1 vs. uniprot
Match: D2DSI7 (RuvB-like helicase (Fragment) n=1 Tax=Scylla paramamosain TaxID=85552 RepID=D2DSI7_SCYPA)

HSP 1 Score: 77.4 bits (189), Expect = 4.450e-13
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 0
Query:  253 DNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSFISK 303
            D G +KG VR+QI  KV++W EEGKAELVP VLFVDEV++LDIECFSF+++
Sbjct:   26 DTGEIKGEVRQQINAKVAEWREEGKAELVPGVLFVDEVHMLDIECFSFLNR 76          
BLAST of Ggra1202.t1 vs. uniprot
Match: ruvB-like 2 n=2 Tax=Emydidae TaxID=8476 RepID=UPI001C673089 (ruvB-like 2 n=2 Tax=Emydidae TaxID=8476 RepID=UPI001C673089)

HSP 1 Score: 76.3 bits (186), Expect = 5.340e-13
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 0
Query:  241 SREDSALGGGKADNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSFISKMISS 307
            SR    L     D G +K  VREQI  KV++W EEGKAE++P VLF+DEV++LDIECFSF+++ + S
Sbjct:    7 SRTQGFLALFSGDTGEIKAEVREQINAKVAEWREEGKAEVIPGVLFIDEVHMLDIECFSFLNRALES 73          
BLAST of Ggra1202.t1 vs. uniprot
Match: ruvB-like 2 n=2 Tax=Alcyoniina TaxID=723662 RepID=UPI00106BE989 (ruvB-like 2 n=2 Tax=Alcyoniina TaxID=723662 RepID=UPI00106BE989)

HSP 1 Score: 79.7 bits (195), Expect = 5.570e-13
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 0
Query:  241 SREDSALGGGKADNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSFISKMISS 307
            SR    L     D G +KG VREQI  KV++W EEGKAE+VP VLFVDEV++LDIECFSF+++ + S
Sbjct:  251 SRTQGFLALFSGDTGEIKGEVREQINAKVAEWREEGKAEIVPGVLFVDEVHMLDIECFSFLNRALES 317          
BLAST of Ggra1202.t1 vs. uniprot
Match: A0A7R9KVI5 (RuvB-like helicase n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9KVI5_9ACAR)

HSP 1 Score: 78.2 bits (191), Expect = 5.590e-13
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 0
Query:  241 SREDSALGGGKADNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSFISKMISS 307
            SR    L     D G +K  VREQI  KVS+W EEGKA+++P VLF+DEV++LDIECFSFI++ I S
Sbjct:   61 SRTQGFLALFSGDTGEIKAEVREQINAKVSEWKEEGKADIIPGVLFIDEVHMLDIECFSFINRAIES 127          
BLAST of Ggra1202.t1 vs. uniprot
Match: D8LJG0 (RuvB-like helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJG0_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 5.670e-13
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 0
Query:  241 SREDSALGGGKADNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSFISKMISSH 308
            SR+   L     D G +KG VREQI +KV++W EEGKA +VP VLF+DEV++LDIECFS++++ + SH
Sbjct:  251 SRQQGFLALFAGDTGEIKGEVREQIDLKVAEWREEGKATIVPGVLFIDEVHMLDIECFSWLNRALESH 318          
BLAST of Ggra1202.t1 vs. uniprot
Match: A0A7S2JBM6 (RuvB-like helicase (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2JBM6_9DINO)

HSP 1 Score: 76.3 bits (186), Expect = 5.920e-13
Identity = 35/67 (52.24%), Postives = 50/67 (74.63%), Query Frame = 0
Query:  241 SREDSALGGGKADNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSFISKMISS 307
            SR+   L     D G +KG VREQI  KV++W EEGKA++VP VLF+DEV++LDIECF+++++ + S
Sbjct:   31 SRQQGFLALFAGDTGEIKGEVREQIDAKVAEWREEGKADIVPGVLFIDEVHMLDIECFTYLNRALES 97          
The following BLAST results are available for this feature:
BLAST of Ggra1202.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPG61.790e-1756.79Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3INL29.090e-1461.19RuvB-like helicase n=1 Tax=Gracilariopsis chorda T... [more]
A0A822B7981.010e-1355.22RuvB-like helicase n=1 Tax=Rotaria socialis TaxID=... [more]
A0A7S1T1193.810e-1364.71RuvB-like helicase (Fragment) n=1 Tax=Tetraselmis ... [more]
D2DSI74.450e-1368.63RuvB-like helicase (Fragment) n=1 Tax=Scylla param... [more]
ruvB-like 2 n=2 Tax=Emydidae TaxID=8476 RepID=UPI001C6730895.340e-1353.73ruvB-like 2 n=2 Tax=Emydidae TaxID=8476 RepID=UPI0... [more]
ruvB-like 2 n=2 Tax=Alcyoniina TaxID=723662 RepID=UPI00106BE9895.570e-1358.21ruvB-like 2 n=2 Tax=Alcyoniina TaxID=723662 RepID=... [more]
A0A7R9KVI55.590e-1356.72RuvB-like helicase n=1 Tax=Medioppia subpectinata ... [more]
D8LJG05.670e-1354.41RuvB-like helicase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S2JBM65.920e-1352.24RuvB-like helicase (Fragment) n=1 Tax=Alexandrium ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010339TIP49, P-loop domainPFAMPF06068TIP49coord: 251..308
e-value: 9.6E-17
score: 61.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 235..311
e-value: 7.5E-15
score: 57.1
IPR037942RuvB-like helicase 2PANTHERPTHR11093:SF2RUVB-LIKE 2coord: 241..306
IPR027238RuvB-likePANTHERPTHR11093RUVB-RELATED REPTIN AND PONTINcoord: 241..306

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:117702..119246 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1202.t1Ggra1202.t1Gracilaria gracilis GNS1m malemRNAtig00000168_pilon 117702..119246 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1202.t1 ID=Ggra1202.t1|Name=Ggra1202.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=313bp
MGRHDAATTQSTKPTIQGEMHAVFELLFELYFKSRRDLHKQNHELAMRAA
LPSISKWNQQLMRRHKASQLQRSQFSKTFAIVHALLRRTASSRTCSNRNA
RGAAATAAVPLLQQSQSQPQTKSVHLTLLLPTHESIVVGTARVRERELEQ
VNQIALLDVELSAESACVPLVAALSLQLEQLQNVQLRQSTRRFARSRIGH
ARSQLRYFLHRGGAALRVGTLAAAAVRERCDVVRPGLVGRSREDSALGGG
KADNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSF
ISKMISSHQPTQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010339TIP49_P-loop
IPR027417P-loop_NTPase
IPR037942RUVBL2
IPR027238RuvB-like