Ggra1202.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1202.t1
Unique NameGgra1202.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:117702..119246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LJG0
PFAMsTIP49
Max annot lvl2759|Eukaryota
KEGG koko:K11338,ko:K11374
GOsGO:0000123,GO:0000228,GO:0000491,GO:0000492,GO:0000785,GO:0000790,GO:0000812,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016043,GO:0016462,GO:0016569,GO:0016570,GO:0016573,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0031011,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0034622,GO:0034708,GO:0035097,GO:0035267,GO:0036211,GO:0042623,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044665,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051276,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0070603,GO:0071103,GO:0071339,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097255,GO:0097346,GO:0140097,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1903506,GO:1904949,GO:1990234,GO:2000112,GO:2001141
Evalue7.17e-14
EggNOG OGsCOG1224@1|root,KOG2680@2759|Eukaryota
EC3.6.4.12
DescriptionATP-dependent 5'-3' DNA helicase activity
COG categoryK
BRITEko00000,ko01000,ko03016,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1202Ggra1202Gracilaria gracilis GNS1m malegenetig00000168_pilon 117702..119246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1202.t1Ggra1202.t1Gracilaria gracilis GNS1m malepolypeptidetig00000168_pilon 117702..119246 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1202.t1.stop1Ggra1202.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000168_pilon 117702..117704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1202.t1.CDS1Ggra1202.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000168_pilon 117702..118252 -
Ggra1202.t1.CDS2Ggra1202.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000168_pilon 118859..119246 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1202.t1.exon1Ggra1202.t1.exon1Gracilaria gracilis GNS1m maleexontig00000168_pilon 117702..118252 -
Ggra1202.t1.exon2Ggra1202.t1.exon2Gracilaria gracilis GNS1m maleexontig00000168_pilon 118859..119246 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1202.t1.intron1Ggra1202.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000168_pilon 118253..118858 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1202.t1.start1Ggra1202.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000168_pilon 119244..119246 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1202.t1 ID=Ggra1202.t1|Name=Ggra1202.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=313bp
MGRHDAATTQSTKPTIQGEMHAVFELLFELYFKSRRDLHKQNHELAMRAA
LPSISKWNQQLMRRHKASQLQRSQFSKTFAIVHALLRRTASSRTCSNRNA
RGAAATAAVPLLQQSQSQPQTKSVHLTLLLPTHESIVVGTARVRERELEQ
VNQIALLDVELSAESACVPLVAALSLQLEQLQNVQLRQSTRRFARSRIGH
ARSQLRYFLHRGGAALRVGTLAAAAVRERCDVVRPGLVGRSREDSALGGG
KADNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSF
ISKMISSHQPTQ*
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spliced messenger RNA

>Ggra1202.t1 ID=Ggra1202.t1|Name=Ggra1202.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000168_pilon:117702..119246- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCGCCACGACGCTGCCACCACGCAGAGCACAAAGCCCACCATCCA
GGGCGAGATGCACGCCGTGTTCGAGCTTCTTTTCGAGTTGTACTTTAAAT
CGCGCCGCGACCTGCACAAGCAGAACCACGAGCTGGCTATGCGCGCCGCG
CTGCCTTCCATCTCCAAGTGGAACCAGCAGCTCATGCGCCGCCACAAGGC
ATCCCAGCTGCAGCGCTCGCAGTTCTCAAAGACGTTTGCTATCGTGCACG
CTTTGCTCAGACGTACTGCTAGCTCGCGCACGTGCTCCAACCGCAACGCC
CGTGGTGCTGCCGCCACCGCCGCCGTGCCTCTGCTGCAACAGTCGCAGTC
GCAGCCGCAAACGAAGAGCGTGCACTTGACGTTGCTGTTACCCACGCATG
AGTCCATCGTTGTCGGCACGGCCCGTGTACGTGAGCGTGAACTTGAGCAA
GTCAATCAGATCGCGCTCCTCGACGTTGAACTTAGCGCTGAGAGCGCGTG
CGTCCCACTTGTGGCTGCTCTCTCTTTACAGCTTGAACAGCTGCAAAACG
TCCAGCTGCGACAATCTACCCGCCGCTTTGCTCGCAGTCGAATTGGCCAT
GCGCGATCGCAGCTGCGGTACTTCTTGCACCGTGGCGGCGCTGCGCTGCG
CGTGGGGACGCTTGCCGCTGCCGCAGTCCGAGAACGCTGTGACGTCGTGA
GACCCGGCTTAGTTGGCCGAAGTCGAGAGGACAGCGCGCTGGGCGGTGGT
AAAGCGGACAATGGTGGTGTCAAGGGCGCAGTACGCGAACAGATTGGCAT
GAAGGTTTCCAAATGGTGGGAAGAAGGGAAGGCTGAACTTGTACCTGAAG
TGCTTTTTGTTGACGAAGTGTATCTGTTGGACATTGAATGCTTTTCTTTC
ATCAGCAAGATGATTTCATCACACCAACCTACTCAATAA
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protein sequence of Ggra1202.t1

>Ggra1202.t1 ID=Ggra1202.t1|Name=Ggra1202.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=313bp
MGRHDAATTQSTKPTIQGEMHAVFELLFELYFKSRRDLHKQNHELAMRAA
LPSISKWNQQLMRRHKASQLQRSQFSKTFAIVHALLRRTASSRTCSNRNA
RGAAATAAVPLLQQSQSQPQTKSVHLTLLLPTHESIVVGTARVRERELEQ
VNQIALLDVELSAESACVPLVAALSLQLEQLQNVQLRQSTRRFARSRIGH
ARSQLRYFLHRGGAALRVGTLAAAAVRERCDVVRPGLVGRSREDSALGGG
KADNGGVKGAVREQIGMKVSKWWEEGKAELVPEVLFVDEVYLLDIECFSF
ISKMISSHQPTQ*
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mRNA from alignment at tig00000168_pilon:117702..119246-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1202.t1 ID=Ggra1202.t1|Name=Ggra1202.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1545bp|location=Sequence derived from alignment at tig00000168_pilon:117702..119246- (Gracilaria gracilis GNS1m male)
ATGGGGCGCCACGACGCTGCCACCACGCAGAGCACAAAGCCCACCATCCA
GGGCGAGATGCACGCCGTGTTCGAGCTTCTTTTCGAGTTGTACTTTAAAT
CGCGCCGCGACCTGCACAAGCAGAACCACGAGCTGGCTATGCGCGCCGCG
CTGCCTTCCATCTCCAAGTGGAACCAGCAGCTCATGCGCCGCCACAAGGC
ATCCCAGCTGCAGCGCTCGCAGTTCTCAAAGACGTTTGCTATCGTGCACG
CTTTGCTCAGACGTACTGCTAGCTCGCGCACGTGCTCCAACCGCAACGCC
CGTGGTGCTGCCGCCACCGCCGCCGTGCCTCTGCTGCAACAGTCGCAGTC
GCAGCCGCAAACGAAGAGCGTGCACTTGACGTTGCTGTGTTCGCCCAATG
CGCTCTTGCTCACCTGGTGCTGTGCATCATTGCGCTCGAGTCATGTGAGA
ACGTTGTGTCGCAGGAGAATAGGCCGCCTACCTTGGAGCACTATTCGGCT
TTCGGCGCGCTCTTCGTGATGTGCGCCGCCTACCCTCACGCCTTGCGTTC
AGTGCATGCGCGCGCTCTGAATCAGCTTCGTGGACGCTCGTAGTCGCCGT
TTGTCAGCGCGCTCTACCGCTGCAAGCGATAACCCGCAGTAAGCGATGAC
CTTTTTGTATCATATCAAGTGTTCACTGAGTGCTTTTGTTTTCGCGTGCT
TGTCGCTCCTCGCTCCTTCGCTCGCGCCCTGCGCTGTATCCCAACGCTGC
GAACGCGCGCTCGGTCACGGCTGCTATGGCGGCTGCTACCTGTGCTTGCT
GCCTGTTGGCTGCCATGCGCTTCATGCTTGTACTTTGCCACCACGTCGCC
TTCTCAAGCTGTTTGCACACAGCAAGCGCTTCGAGTTGCGCCGCCACGCC
AAGTTTTGTATAAAACCATCCAAGTCACACACTACCCTGGATCTACTAGT
CCTTCTCAAAGCGCGTGATCGTGTTCTTCGCATCGGCGTTGTAGTACCCA
CGCATGAGTCCATCGTTGTCGGCACGGCCCGTGTACGTGAGCGTGAACTT
GAGCAAGTCAATCAGATCGCGCTCCTCGACGTTGAACTTAGCGCTGAGAG
CGCGTGCGTCCCACTTGTGGCTGCTCTCTCTTTACAGCTTGAACAGCTGC
AAAACGTCCAGCTGCGACAATCTACCCGCCGCTTTGCTCGCAGTCGAATT
GGCCATGCGCGATCGCAGCTGCGGTACTTCTTGCACCGTGGCGGCGCTGC
GCTGCGCGTGGGGACGCTTGCCGCTGCCGCAGTCCGAGAACGCTGTGACG
TCGTGAGACCCGGCTTAGTTGGCCGAAGTCGAGAGGACAGCGCGCTGGGC
GGTGGTAAAGCGGACAATGGTGGTGTCAAGGGCGCAGTACGCGAACAGAT
TGGCATGAAGGTTTCCAAATGGTGGGAAGAAGGGAAGGCTGAACTTGTAC
CTGAAGTGCTTTTTGTTGACGAAGTGTATCTGTTGGACATTGAATGCTTT
TCTTTCATCAGCAAGATGATTTCATCACACCAACCTACTCAATAA
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Coding sequence (CDS) from alignment at tig00000168_pilon:117702..119246-

>Ggra1202.t1 ID=Ggra1202.t1|Name=Ggra1202.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=939bp|location=Sequence derived from alignment at tig00000168_pilon:117702..119246- (Gracilaria gracilis GNS1m male)
ATGGGGCGCCACGACGCTGCCACCACGCAGAGCACAAAGCCCACCATCCA
GGGCGAGATGCACGCCGTGTTCGAGCTTCTTTTCGAGTTGTACTTTAAAT
CGCGCCGCGACCTGCACAAGCAGAACCACGAGCTGGCTATGCGCGCCGCG
CTGCCTTCCATCTCCAAGTGGAACCAGCAGCTCATGCGCCGCCACAAGGC
ATCCCAGCTGCAGCGCTCGCAGTTCTCAAAGACGTTTGCTATCGTGCACG
CTTTGCTCAGACGTACTGCTAGCTCGCGCACGTGCTCCAACCGCAACGCC
CGTGGTGCTGCCGCCACCGCCGCCGTGCCTCTGCTGCAACAGTCGCAGTC
GCAGCCGCAAACGAAGAGCGTGCACTTGACGTTGCTGTTACCCACGCATG
AGTCCATCGTTGTCGGCACGGCCCGTGTACGTGAGCGTGAACTTGAGCAA
GTCAATCAGATCGCGCTCCTCGACGTTGAACTTAGCGCTGAGAGCGCGTG
CGTCCCACTTGTGGCTGCTCTCTCTTTACAGCTTGAACAGCTGCAAAACG
TCCAGCTGCGACAATCTACCCGCCGCTTTGCTCGCAGTCGAATTGGCCAT
GCGCGATCGCAGCTGCGGTACTTCTTGCACCGTGGCGGCGCTGCGCTGCG
CGTGGGGACGCTTGCCGCTGCCGCAGTCCGAGAACGCTGTGACGTCGTGA
GACCCGGCTTAGTTGGCCGAAGTCGAGAGGACAGCGCGCTGGGCGGTGGT
AAAGCGGACAATGGTGGTGTCAAGGGCGCAGTACGCGAACAGATTGGCAT
GAAGGTTTCCAAATGGTGGGAAGAAGGGAAGGCTGAACTTGTACCTGAAG
TGCTTTTTGTTGACGAAGTGTATCTGTTGGACATTGAATGCTTTTCTTTC
ATCAGCAAGATGATTTCATCACACCAACCTACTCAATAA
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