Ggra1183.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1183.t1
Unique NameGgra1183.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length366
Homology
BLAST of Ggra1183.t1 vs. uniprot
Match: A0A2V3J386 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J386_9FLOR)

HSP 1 Score: 493 bits (1270), Expect = 3.850e-173
Identity = 250/340 (73.53%), Postives = 279/340 (82.06%), Query Frame = 0
Query:   25 MTSRPSNPPFWRTRKALSRLPILTQLSIAAVVGAVAMLLIQVVAVFSLSSTTTTAKSSINAPSFGTGIKPNIHLPPRARPLVIVAAGLPRTGSTWVYNVLRILARIRDPNSVAGWYADLINIWKNHKTGRYDHMKDSWLTAYTSLNTSLVIKMHGPGPFKLFSHGLPLEKAADLTVITHRDLRTEVRSWVYQNWNSSIHSGDIDSTPFGDPSQWVRVAHHILDERKSTLKSIGSGRFLDIRYEDWNKQPFEKQVEVVRQMANELHWDYTEDELMATAIEAARLEPPANGAVLMYNPVNKLHPGHTRVDTTNANFVQALKNGFRAIEQDPDSGQFLQLKNY 364
            MT+R S P FWRTRK+L+RLPI T L+ AAV GA+ ML+ Q      LS           AP  G   +    LPPR RPLVIVAAGLPRTGSTWVYNV+RILARIRDPNSVAGWYADLINIWKNHKTGRYDHMK+SWLTAY SLNT+LVIKMHGPGPFKLFSHG PL K A+LTVITHRDLRTEVRSWVYQNWN+SIH+G+I STPFGDP+QWVRVAHHILDER STL S+GSGR LDIRYEDWN++ FE QV+V++++ANEL W Y+ +ELMATAIEAARLEPPAN AVLMYNPVNKLHPGHTRVD  +  FV AL+ GFRAIE+D DS  FL+ K Y
Sbjct:    1 MTARSSQPLFWRTRKSLTRLPIATLLTFAAVAGALTMLMAQNFFSILLSK---------KAPVKGVATR----LPPRPRPLVIVAAGLPRTGSTWVYNVIRILARIRDPNSVAGWYADLINIWKNHKTGRYDHMKESWLTAYKSLNTTLVIKMHGPGPFKLFSHGAPL-KQANLTVITHRDLRTEVRSWVYQNWNASIHAGNIGSTPFGDPNQWVRVAHHILDERLSTLASVGSGRVLDIRYEDWNQKSFEHQVKVIKKIANELGWPYSREELMATAIEAARLEPPANNAVLMYNPVNKLHPGHTRVDAKDPTFVHALEKGFRAIEKDADSRSFLKSKRY 326          
BLAST of Ggra1183.t1 vs. uniprot
Match: A0A1X6NVY7 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NVY7_PORUM)

HSP 1 Score: 141 bits (355), Expect = 1.410e-34
Identity = 109/312 (34.94%), Postives = 148/312 (47.44%), Query Frame = 0
Query:  103 RPLVIVAAGLPRTGSTWVYNVLRILARIRDPNSVAGWYADLINIWKNHK-----TGRYDHMK-DSWLTAYTSLNTSLVIKMHGPGPFKLFSHG-----------------LPLEK---AADLTVITHRDLRTEVRSWVYQNWNSSIHSGDIDS--------------TPFG-----DPSQWVRVAH-HILDERKSTLKSIGSGRFLDIRYEDWNKQPFEKQVEVVRQMANELHWDYTEDELMATAIEAARLE-PPAN---GAVLMYNPVNKLHPGHTRVDTTNANFVQALKNGFRAIEQDPDSGQFLQLKNY 364
            RPL++VAAG  R+ STWVYNV RIL R+RDPN+VAGWY DL  +   +       G Y H++  S L A  SL+TS+++K+H    +     G                 +PL +   AAD+ + +HRD+R  VRS  +  W S ++    D                P G     D   WV +A  HIL  R+  L S G    LD+  E+ +       +  +R +A  L W YTE EL   A E ARL  PP +   G  L+ NP + +H GH R+   N   V A   G  AIE DP   ++L    Y
Sbjct:   84 RPLLVVAAGGSRSASTWVYNVARILLRVRDPNTVAGWYEDLAGLTGAYAQLEAGNGTYPHVEVASRLDALRSLDTSVLLKIHLVQEWATLLGGADAATTTATGGASDADLVPLTELSAAADVVLTSHRDVREVVRSLRHMGWGSRVNPAAFDHPDFCRRPYDARWGPAPLGADGYRDADAWVNMARAHILC-RERLLASAGDKLALDVAAEELHGASAAVALRHIRTVAAALEWPYTEAELEGVATEVARLRVPPCHSGYGVQLVLNPTSHMHRGHVRLAAENVEAVDAA--GVAAIEADPFCRRWLVAHGY 392          
BLAST of Ggra1183.t1 vs. uniprot
Match: R7QIR2 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIR2_CHOCR)

HSP 1 Score: 124 bits (311), Expect = 2.270e-28
Identity = 96/287 (33.45%), Postives = 133/287 (46.34%), Query Frame = 0
Query:  104 PLVIVAAGLPRTGSTWVYNVLRILARIRDPNSVAGWYADLINIWKNHKTGRYDHMK-DSWLTAYTSLNTSLVIKMHGPGPFKLFSH----GLPLEKAADLTVITHRDLRTEVRSWVYQNWNSSIHSGDIDSTPF------------------GDPSQWVRVAHHILDERKSTLKSIGSGRFLDIRYEDWNKQPFEKQVEVVRQMANELHWDYTEDELMATAIEAARLEPPA--NGAVLM-YNPVNKLHPGHTRVDTTNANFVQALKNGFRAIEQDPDSGQFLQLKNY 364
            PLV++AAG  R GSTW++N LRIL R+RDPN+VAGW+ADL + W +    R  +   +    A+  + TSL++K+H    +  F         +E+  D    ++RD+R  VRS     W   +  G +    F                   D S WVR A   +  R+  L + G    +DI+ ED         V V+R M   L + Y+E EL   A E  RL  P    GAV M  NPV  LH GH +VD + A  +   + G  AI  D D   +L    Y
Sbjct:  135 PLVVIAAGGSRAGSTWLFNALRILLRVRDPNTVAGWHADL-SAWHDRYAVRPPNATGEPTARAFQRMGTSLLVKVHLLQDWHHFQATEDADAKMEQHVDAVFTSYRDVRHVVRSVRDMGWGVDVPLGRLTHPDFCRKRAPQQRHKTLTAGQYHDKSVWVRQALATIRCREVLLAAAGGKLKMDIKAEDMRGLSEAATVAVLRDMGTHLDYAYSEGELEGAARELMRLRAPLCNAGAVAMDLNPVTHLHRGHVQVDKSPAAGLVE-RRGMGAITADADCALWLTRHGY 419          
BLAST of Ggra1183.t1 vs. uniprot
Match: A0A7S2ZYK3 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZYK3_9RHOD)

HSP 1 Score: 89.7 bits (221), Expect = 1.940e-16
Identity = 86/295 (29.15%), Postives = 129/295 (43.73%), Query Frame = 0
Query:  104 PLVIVAAGLPRTGSTWVYNVLRILARIRDPNSVAGWYADLINIWKNHKTGRYDHMKDSWLTAYT--SLNTSLVIKMH-GPGPFKLFS--HGLPLEKAADLTVITHRDLRTEVRSWVYQNWNSSIHS----------GDIDSTPF------GDPSQWV---RVAHHILDERKSTLKSIG---------SGRFLDIRYEDWNKQPFEKQVEVVRQMANELHWDYTEDELMATAIEAARLEPPANGAVLMYNPVNKLHPGHTRVDTTNANFVQALKNGFRAIEQDPDSGQFLQLKNYS 365
            PLV+V  GLPRTGST VYN++R      +PN+++G+  DL++      T R     DS   A    S+   LV+K+H  P  ++LF      P E   D  + T RDLR +V S +   W+S ++           G++ ST         DP  WV   R     LD+ K      G           +F D +   W KQ  E      ++  +EL       E++AT ++   ++P    + +  NP   +H GH R      ++ +A   G  AIE DPD   +L    Y+
Sbjct:   67 PLVLVM-GLPRTGSTIVYNMIRKALEADNPNTLSGYVGDLVS------TARAFSTDDSASAALALRSMGVPLVVKLHLMPHIYQLFGPVQQAPAELGIDKIICTCRDLRMQVLSNIRMGWSSMVYEENLLQEDFCLGELKSTQLLSPSDLEDPRTWVLQARAQIRCLDKIKDWAGRDGIQWIRTEDIPRKFADPQGRAWLKQELEPLPGTRQRSESEL-------EVLATFLDG--IKPLQCSSTVAVNPSTHMHRGHIRKSEALKDYERA---GIEAIEADPDCSAWLSEHGYT 342          
BLAST of Ggra1183.t1 vs. uniprot
Match: A0A7S4M8Q7 (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M8Q7_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.500e-7
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 0
Query:  103 RPLVIVAAGLPRTGSTWVYNVLRILARIRDPNSVAGWYADLINIWKNHKTGRY 155
            +PL++  AG  RTG+T++YN++RIL R RDPN ++GWY DL     ++  GRY
Sbjct:   67 KPLIVFVAGGGRTGTTYMYNLVRILLRQRDPNLISGWYEDL-----SYAAGRY 114          
The following BLAST results are available for this feature:
BLAST of Ggra1183.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J3863.850e-17373.53Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6NVY71.410e-3434.94Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
R7QIR22.270e-2833.45Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2ZYK31.940e-1629.15Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S4M8Q72.500e-749.06Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 95..339
e-value: 5.4E-11
score: 44.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 99..297
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 46..72
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..45
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 73..365
NoneNo IPR availableTMHMMTMhelixcoord: 46..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:100716..101813 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1183.t1Ggra1183.t1Gracilaria gracilis GNS1m malemRNAtig00000237_pilon 100716..101813 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1183.t1 ID=Ggra1183.t1|Name=Ggra1183.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=366bp
MKCILDTDHVISFPTSLQCNQPILMTSRPSNPPFWRTRKALSRLPILTQL
SIAAVVGAVAMLLIQVVAVFSLSSTTTTAKSSINAPSFGTGIKPNIHLPP
RARPLVIVAAGLPRTGSTWVYNVLRILARIRDPNSVAGWYADLINIWKNH
KTGRYDHMKDSWLTAYTSLNTSLVIKMHGPGPFKLFSHGLPLEKAADLTV
ITHRDLRTEVRSWVYQNWNSSIHSGDIDSTPFGDPSQWVRVAHHILDERK
STLKSIGSGRFLDIRYEDWNKQPFEKQVEVVRQMANELHWDYTEDELMAT
AIEAARLEPPANGAVLMYNPVNKLHPGHTRVDTTNANFVQALKNGFRAIE
QDPDSGQFLQLKNYS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase