Ggra1183.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1183.t1
Unique NameGgra1183.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length366
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:100716..101813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1183Ggra1183Gracilaria gracilis GNS1m malegenetig00000237_pilon 100716..101813 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1183.t1.stop1Ggra1183.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000237_pilon 100716..100718 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1183.t1.CDS1Ggra1183.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000237_pilon 100716..101813 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1183.t1.exon1Ggra1183.t1.exon1Gracilaria gracilis GNS1m maleexontig00000237_pilon 100716..101813 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1183.t1.start1Ggra1183.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000237_pilon 101811..101813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1183.t1Ggra1183.t1Gracilaria gracilis GNS1m malepolypeptidetig00000237_pilon 100716..101813 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1183.t1 ID=Ggra1183.t1|Name=Ggra1183.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=366bp
MKCILDTDHVISFPTSLQCNQPILMTSRPSNPPFWRTRKALSRLPILTQL
SIAAVVGAVAMLLIQVVAVFSLSSTTTTAKSSINAPSFGTGIKPNIHLPP
RARPLVIVAAGLPRTGSTWVYNVLRILARIRDPNSVAGWYADLINIWKNH
KTGRYDHMKDSWLTAYTSLNTSLVIKMHGPGPFKLFSHGLPLEKAADLTV
ITHRDLRTEVRSWVYQNWNSSIHSGDIDSTPFGDPSQWVRVAHHILDERK
STLKSIGSGRFLDIRYEDWNKQPFEKQVEVVRQMANELHWDYTEDELMAT
AIEAARLEPPANGAVLMYNPVNKLHPGHTRVDTTNANFVQALKNGFRAIE
QDPDSGQFLQLKNYS*
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spliced messenger RNA

>Ggra1183.t1 ID=Ggra1183.t1|Name=Ggra1183.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000237_pilon:100716..101813- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATGTATATTGGACACCGATCATGTCATTTCTTTCCCCACCTCACT
TCAATGCAACCAGCCTATCCTCATGACTAGTCGACCTTCTAACCCGCCCT
TTTGGCGCACCCGAAAGGCGCTTTCGCGCTTGCCTATCTTGACACAACTC
TCAATAGCCGCGGTGGTGGGTGCTGTGGCAATGCTCCTCATTCAAGTCGT
AGCCGTCTTCTCTCTGAGTAGCACTACCACAACCGCGAAGTCTAGCATCA
ACGCCCCGAGCTTCGGCACTGGAATCAAGCCGAATATTCACCTCCCACCA
CGTGCCCGACCATTAGTAATCGTTGCAGCAGGTCTTCCTCGAACGGGGTC
GACATGGGTATACAACGTACTTCGCATTCTTGCGCGCATCAGAGATCCAA
ACTCCGTGGCTGGTTGGTATGCTGACCTAATCAACATATGGAAGAACCAC
AAAACGGGTCGATACGACCACATGAAAGATTCGTGGTTGACTGCGTACAC
ATCATTGAATACAAGTTTGGTTATTAAGATGCACGGTCCTGGTCCCTTTA
AGTTGTTTTCACACGGGCTGCCGTTGGAAAAGGCAGCTGATCTAACAGTC
ATTACTCACCGAGACTTGAGAACAGAGGTTCGATCGTGGGTGTATCAAAA
TTGGAACTCATCGATTCACTCAGGTGATATCGATTCCACGCCGTTTGGAG
ATCCTAGTCAGTGGGTGCGTGTCGCACATCATATCTTAGACGAGCGAAAA
AGCACTTTGAAATCAATTGGCAGTGGGCGCTTTCTCGACATTCGTTACGA
AGACTGGAATAAGCAGCCCTTCGAGAAGCAGGTTGAGGTCGTCAGACAAA
TGGCGAATGAGCTGCACTGGGATTATACAGAAGATGAACTAATGGCGACG
GCGATCGAAGCAGCAAGATTAGAGCCTCCTGCTAACGGGGCTGTGTTAAT
GTATAACCCCGTGAACAAGTTACATCCAGGACACACAAGAGTTGACACAA
CAAATGCCAATTTTGTTCAAGCGTTGAAGAACGGATTTCGTGCTATCGAG
CAAGACCCAGACAGCGGCCAGTTTCTTCAACTGAAGAACTATTCTTGA
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protein sequence of Ggra1183.t1

>Ggra1183.t1 ID=Ggra1183.t1|Name=Ggra1183.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=366bp
MKCILDTDHVISFPTSLQCNQPILMTSRPSNPPFWRTRKALSRLPILTQL
SIAAVVGAVAMLLIQVVAVFSLSSTTTTAKSSINAPSFGTGIKPNIHLPP
RARPLVIVAAGLPRTGSTWVYNVLRILARIRDPNSVAGWYADLINIWKNH
KTGRYDHMKDSWLTAYTSLNTSLVIKMHGPGPFKLFSHGLPLEKAADLTV
ITHRDLRTEVRSWVYQNWNSSIHSGDIDSTPFGDPSQWVRVAHHILDERK
STLKSIGSGRFLDIRYEDWNKQPFEKQVEVVRQMANELHWDYTEDELMAT
AIEAARLEPPANGAVLMYNPVNKLHPGHTRVDTTNANFVQALKNGFRAIE
QDPDSGQFLQLKNYS*
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mRNA from alignment at tig00000237_pilon:100716..101813-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1183.t1 ID=Ggra1183.t1|Name=Ggra1183.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000237_pilon:100716..101813- (Gracilaria gracilis GNS1m male)
ATGAAATGTATATTGGACACCGATCATGTCATTTCTTTCCCCACCTCACT
TCAATGCAACCAGCCTATCCTCATGACTAGTCGACCTTCTAACCCGCCCT
TTTGGCGCACCCGAAAGGCGCTTTCGCGCTTGCCTATCTTGACACAACTC
TCAATAGCCGCGGTGGTGGGTGCTGTGGCAATGCTCCTCATTCAAGTCGT
AGCCGTCTTCTCTCTGAGTAGCACTACCACAACCGCGAAGTCTAGCATCA
ACGCCCCGAGCTTCGGCACTGGAATCAAGCCGAATATTCACCTCCCACCA
CGTGCCCGACCATTAGTAATCGTTGCAGCAGGTCTTCCTCGAACGGGGTC
GACATGGGTATACAACGTACTTCGCATTCTTGCGCGCATCAGAGATCCAA
ACTCCGTGGCTGGTTGGTATGCTGACCTAATCAACATATGGAAGAACCAC
AAAACGGGTCGATACGACCACATGAAAGATTCGTGGTTGACTGCGTACAC
ATCATTGAATACAAGTTTGGTTATTAAGATGCACGGTCCTGGTCCCTTTA
AGTTGTTTTCACACGGGCTGCCGTTGGAAAAGGCAGCTGATCTAACAGTC
ATTACTCACCGAGACTTGAGAACAGAGGTTCGATCGTGGGTGTATCAAAA
TTGGAACTCATCGATTCACTCAGGTGATATCGATTCCACGCCGTTTGGAG
ATCCTAGTCAGTGGGTGCGTGTCGCACATCATATCTTAGACGAGCGAAAA
AGCACTTTGAAATCAATTGGCAGTGGGCGCTTTCTCGACATTCGTTACGA
AGACTGGAATAAGCAGCCCTTCGAGAAGCAGGTTGAGGTCGTCAGACAAA
TGGCGAATGAGCTGCACTGGGATTATACAGAAGATGAACTAATGGCGACG
GCGATCGAAGCAGCAAGATTAGAGCCTCCTGCTAACGGGGCTGTGTTAAT
GTATAACCCCGTGAACAAGTTACATCCAGGACACACAAGAGTTGACACAA
CAAATGCCAATTTTGTTCAAGCGTTGAAGAACGGATTTCGTGCTATCGAG
CAAGACCCAGACAGCGGCCAGTTTCTTCAACTGAAGAACTATTCTTGA
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Coding sequence (CDS) from alignment at tig00000237_pilon:100716..101813-

>Ggra1183.t1 ID=Ggra1183.t1|Name=Ggra1183.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1098bp|location=Sequence derived from alignment at tig00000237_pilon:100716..101813- (Gracilaria gracilis GNS1m male)
ATGAAATGTATATTGGACACCGATCATGTCATTTCTTTCCCCACCTCACT
TCAATGCAACCAGCCTATCCTCATGACTAGTCGACCTTCTAACCCGCCCT
TTTGGCGCACCCGAAAGGCGCTTTCGCGCTTGCCTATCTTGACACAACTC
TCAATAGCCGCGGTGGTGGGTGCTGTGGCAATGCTCCTCATTCAAGTCGT
AGCCGTCTTCTCTCTGAGTAGCACTACCACAACCGCGAAGTCTAGCATCA
ACGCCCCGAGCTTCGGCACTGGAATCAAGCCGAATATTCACCTCCCACCA
CGTGCCCGACCATTAGTAATCGTTGCAGCAGGTCTTCCTCGAACGGGGTC
GACATGGGTATACAACGTACTTCGCATTCTTGCGCGCATCAGAGATCCAA
ACTCCGTGGCTGGTTGGTATGCTGACCTAATCAACATATGGAAGAACCAC
AAAACGGGTCGATACGACCACATGAAAGATTCGTGGTTGACTGCGTACAC
ATCATTGAATACAAGTTTGGTTATTAAGATGCACGGTCCTGGTCCCTTTA
AGTTGTTTTCACACGGGCTGCCGTTGGAAAAGGCAGCTGATCTAACAGTC
ATTACTCACCGAGACTTGAGAACAGAGGTTCGATCGTGGGTGTATCAAAA
TTGGAACTCATCGATTCACTCAGGTGATATCGATTCCACGCCGTTTGGAG
ATCCTAGTCAGTGGGTGCGTGTCGCACATCATATCTTAGACGAGCGAAAA
AGCACTTTGAAATCAATTGGCAGTGGGCGCTTTCTCGACATTCGTTACGA
AGACTGGAATAAGCAGCCCTTCGAGAAGCAGGTTGAGGTCGTCAGACAAA
TGGCGAATGAGCTGCACTGGGATTATACAGAAGATGAACTAATGGCGACG
GCGATCGAAGCAGCAAGATTAGAGCCTCCTGCTAACGGGGCTGTGTTAAT
GTATAACCCCGTGAACAAGTTACATCCAGGACACACAAGAGTTGACACAA
CAAATGCCAATTTTGTTCAAGCGTTGAAGAACGGATTTCGTGCTATCGAG
CAAGACCCAGACAGCGGCCAGTTTCTTCAACTGAAGAACTATTCTTGA
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