Ggra11127.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra11127.t1
Unique NameGgra11127.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length346
Homology
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BLAST of Ggra11127.t1 vs. uniprot
Match: A0A2V3IIT2 (Prolycopene isomerase 1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIT2_9FLOR)

HSP 1 Score: 165 bits (417), Expect = 1.060e-41
Identity = 96/245 (39.18%), Postives = 135/245 (55.10%), Query Frame = 0 
Query:    5 VVTVDGSCLHNGRPYAVGGWGAVISLPG----GVRAEACRQLCGYCNPT-QSNSRAEIRAVQFAQNLLSEVAKMGHPT----HLNPDGSRCRMTAPHRHDSLDDGRPDINRRFNFLVRSDSEYVVKGIYGEINVMAHSDLWDQVFENHQCIAQNGSTIEYHHVYGHRGDKLNERADTLAR-HAAPLVGYSMYRCCSCEAYFPDSDGLACHLKEIHMNRDLSHEME-ALYDFYEQDGYYYCTLCHR 238
            ++T DG C +NG PYA  GWGA + L       VRA     LC  C+   Q+N+RAE+RA QFA   + E+ K+GHPT    +  P+  R R     R+ S+ D RP +    + ++RSDS +V+KG+ G+     H D+W ++     C+  +G  I + HVYGH GD+ NE AD LA+  AA     +   C  C+  F D +GLA HLK +HM RDL  E + A +    QDG + C LC +
Sbjct:  590 LITTDGCCRNNGTPYARAGWGAFLVLSNHVGEDVRAAVRSALCDSCDAHHQTNNRAELRAAQFALRFIHELCKLGHPTQSCGYNLPEIGRSRYNKRSRN-SIMDARPVLGEWVSAVIRSDSTFVIKGLNGQNMQRKHLDVWREMNNCKHCLVNSGCDIRFEHVYGHSGDEYNEHADALAKIAAAEEPNTTTAICLDCDMQFDDYEGLAAHLKFVHMRRDLEEEADIADHAEQTQDGMFICPLCPK 833
The following BLAST results are available for this feature:
BLAST of Ggra11127.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IIT21.060e-4139.18Prolycopene isomerase 1, chloroplastic n=1 Tax=Gra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF00075RNase_Hcoord: 109..178
e-value: 1.7E-8
score: 34.8
IPR002156Ribonuclease H domainPROSITEPS50879RNASE_Hcoord: 1..179
score: 16.303885
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..181
e-value: 5.5E-25
score: 90.0
NoneNo IPR availablePANTHERPTHR10642RIBONUCLEASE H1coord: 4..179
NoneNo IPR availablePANTHERPTHR10642:SF23RIBONUCLEASE H1coord: 4..179
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 188..209
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 186..214
score: 9.016026
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 3..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000110_piloncontigtig00000110_pilon:77505..79246 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11127.t1Ggra11127.t1Gracilaria gracilis GNS1m malemRNAtig00000110_pilon 77505..79246 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra11127.t1 ID=Ggra11127.t1|Name=Ggra11127.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=346bp
MRDIVVTVDGSCLHNGRPYAVGGWGAVISLPGGVRAEACRQLCGYCNPTQ
SNSRAEIRAVQFAQNLLSEVAKMGHPTHLNPDGSRCRMTAPHRHDSLDDG
RPDINRRFNFLVRSDSEYVVKGIYGEINVMAHSDLWDQVFENHQCIAQNG
STIEYHHVYGHRGDKLNERADTLARHAAPLVGYSMYRCCSCEAYFPDSDG
LACHLKEIHMNRDLSHEMEALYDFYEQDGYYYCTLCHRVYLQSAVGAGNE
EEVGEYGIVGSQPSQATQNPSIVTGPGSQPFLPTIAPTAKLMKKVSNVRF
ASAEKLLEEFRSVRPLLRELVTEDDFDDLFSPRNEAERRARKAAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002156RNaseH_domain
IPR036397RNaseH_sf
IPR013087Znf_C2H2_type
IPR012337RNaseH-like_sf