Ggra1112.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1112.t1
Unique NameGgra1112.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length307
Homology
BLAST of Ggra1112.t1 vs. uniprot
Match: A0A2V3IPG6 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPG6_9FLOR)

HSP 1 Score: 221 bits (562), Expect = 2.890e-67
Identity = 143/306 (46.73%), Postives = 183/306 (59.80%), Query Frame = 0
Query:    3 HTPFFVAPL---LLLPRASPPAVHTSA----------RRRAALTPRASASDGPPPXXXXGXXXXXXXXXXXEADARYSRFSEFAAHGGDARLQEQLVSEVLWGATRAATTQSMESTIQGEMHAVSELLSELYSKSRRDLQKRNHELAMRASLPSISKWNQQLMRRHKASKLQRSQISKELAIVHALLRRTARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVQLTLLRAPNALLLTLVLCAIALESFENVVSQENGPSTLAHYSAFGTLFVLCAAYLHALRSAHARALHQLRGRSSS 295
            + PFFV P    L L  A+P A H++           R RA   P   +  G PP                + D RY+RFSEF ++ GDA +Q+ LV EVLW ATR  TTQ+MESTIQ ++ AVS+LLS+LY+KS RD+ KRN ELA+R SLP+ISKWNQQL++ HKASKL++S+ISKELA+V ALL+R  R                                       QL  +RAPNALL TLV+C +ALESF+N+ SQENGPSTLA Y+AF +LF++  AYL ALR+A+  A  +LR  SS+
Sbjct:    2 NAPFFVTPFHPSLPLHSAAPYATHSARKAPVHRCSPLRMRATPPPSDPSQAGQPPE---------------DHDFRYARFSEFNSNHGDAVVQDDLVREVLWQATRTVTTQNMESTIQVQIDAVSDLLSDLYTKSERDIVKRNEELAIRTSLPTISKWNQQLIKGHKASKLRQSEISKELAVVDALLKRATRRKKNQYRRSTQLSMSSSQHVPSLSFLLK-----------QLFNIRAPNALLFTLVVCVLALESFDNIASQENGPSTLASYAAFTSLFLISCAYLRALRAAYTHANTRLRISSST 281          
BLAST of Ggra1112.t1 vs. uniprot
Match: R7QSC1 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSC1_CHOCR)

HSP 1 Score: 133 bits (334), Expect = 1.420e-33
Identity = 90/213 (42.25%), Postives = 122/213 (57.28%), Query Frame = 0
Query:   61 EADARYSRFSEFAAHGGDARLQEQLVSEVLWGATRAATTQSMESTIQGEMHAVSELLSELYSKSRRDLQKRNHELAMRASLPSISKWNQQLMRRHKASKLQRSQISKELAIVHALLRRTARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVQLTLLRAPNALLLTLVLCAIALESFENVVSQENGPSTLAHYSAFGTLFVLCAA 273
            ++D    RF EF +  GD  +Q+ L  EVLW  TR ATT ++E+TIQ E+ AVS+ L+++YS+S RDL  R  ELA RASL +ISKWNQQL++  K SK  RS+ISKELA+V  +LRR  R    XXXX                            ++V+      P  LL T+++C  AL  FE+V  QE+GP+ LA  +A  +L +L  A
Sbjct:   49 DSDGGLGRFREFTSRDGDHGVQDALEREVLWEVTRTATTHTLETTIQDELKAVSDSLADMYSRSDRDLPSRQEELARRASLANISKWNQQLIQGAKMSKSNRSEISKELAVVQVMLRRNRRGREKXXXXSATVAQRRRDGDVGYALDE---------EAVKQA--SKPIRLLFTVMVCVSALTGFEHVAVQESGPTQLAKGAAAFSLVLLTGA 250          
The following BLAST results are available for this feature:
BLAST of Ggra1112.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IPG62.890e-6746.73Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QSC11.420e-3342.25Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..219
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 279..306
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..257
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 258..278

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000945_piloncontigtig00000945_pilon:73791..74711 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1112.t1Ggra1112.t1Gracilaria gracilis GNS1m malemRNAtig00000945_pilon 73791..74711 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1112.t1 ID=Ggra1112.t1|Name=Ggra1112.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=307bp
MPHTPFFVAPLLLLPRASPPAVHTSARRRAALTPRASASDGPPPPPPPGP
PGEPPREPPNEADARYSRFSEFAAHGGDARLQEQLVSEVLWGATRAATTQ
SMESTIQGEMHAVSELLSELYSKSRRDLQKRNHELAMRASLPSISKWNQQ
LMRRHKASKLQRSQISKELAIVHALLRRTARSRSRSRSNRNARGAAAAAA
VPLLQQPQPQPQPQPQTKSVQLTLLRAPNALLLTLVLCAIALESFENVVS
QENGPSTLAHYSAFGTLFVLCAAYLHALRSAHARALHQLRGRSSSPFVSA
RHRRKR*
back to top