Ggra11062.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra11062.t1
Unique NameGgra11062.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length152
Homology
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BLAST of Ggra11062.t1 vs. uniprot
Match: A0A2V3J366 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J366_9FLOR)

HSP 1 Score: 91.3 bits (225), Expect = 6.890e-20
Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = 0 
Query:    1 MAHTTSNQRIAISSLLNDPIRDYICPPQPSSS--QNRLYECEQCLKRFTQKADVRKHKKTVHEKARD 65
            MA   SNQRIAI SLLNDPIR+   P +PSSS  Q +L+ECEQC KRFTQ+ADVRKHKKTVHEKARD
Sbjct:   69 MAVANSNQRIAIPSLLNDPIRE---PGRPSSSTPQIKLFECEQCFKRFTQRADVRKHKKTVHEKARD 132
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BLAST of Ggra11062.t1 vs. uniprot
Match: R7Q3E8 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3E8_CHOCR)

HSP 1 Score: 56.6 bits (135), Expect = 2.870e-7
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = 0 
Query:    4 TTSNQRIAISSLLNDPIRDYICPPQPSSSQNRLYECEQCLKRFTQKADVRKHKKTVH 60
            ++ N R+AI +LLND  RD         S+   Y CE C+K FTQ+ADVRKHKKTVH
Sbjct:    6 SSGNHRMAIHTLLNDSNRDM------QHSRMNGYNCELCMKNFTQRADVRKHKKTVH 56
The following BLAST results are available for this feature:
BLAST of Ggra11062.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J3666.890e-2074.63Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q3E82.870e-752.63Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 124..147
e-value: 0.37
score: 19.8
coord: 37..60
e-value: 0.0077
score: 25.4
coord: 66..89
e-value: 0.0015
score: 27.8
coord: 95..118
e-value: 0.015
score: 24.5
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 124..147
e-value: 0.0051
score: 17.2
coord: 95..118
e-value: 0.0012
score: 19.2
coord: 37..60
e-value: 0.0023
score: 18.3
coord: 66..89
e-value: 0.001
score: 19.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 97..118
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 126..147
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 68..89
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 39..60
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 37..65
score: 12.486803
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 124..151
score: 10.907288
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 95..123
score: 13.089512
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 66..94
score: 12.590717
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 91..119
e-value: 3.5E-6
score: 28.7
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 32..61
e-value: 1.0E-6
score: 30.4
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 120..151
e-value: 1.3E-7
score: 33.2
coord: 62..90
e-value: 1.6E-7
score: 32.9
NoneNo IPR availablePANTHERPTHR24377:SF860ZINC FINGER PROTEIN WECKLEcoord: 36..148
NoneNo IPR availablePANTHERPTHR24377IP01015P-RELATEDcoord: 34..93
NoneNo IPR availablePANTHERPTHR24377IP01015P-RELATEDcoord: 36..148
NoneNo IPR availablePANTHERPTHR24377:SF860ZINC FINGER PROTEIN WECKLEcoord: 34..93
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 35..86
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 75..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:18232..18870 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11062.t1Ggra11062.t1Gracilaria gracilis GNS1m malemRNAtig00000207_pilon 18232..18870 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra11062.t1 ID=Ggra11062.t1|Name=Ggra11062.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=152bp
MAHTTSNQRIAISSLLNDPIRDYICPPQPSSSQNRLYECEQCLKRFTQKA
DVRKHKKTVHEKARDYHCNECTLSFGERGNLNKHVRSIHRKERNFVCNQC
PASFPFRNGLTEHQRMKHSDDRPYECKTCTSSFKKKSHLHRHVTVVHKAT
L*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf