Ggra11027.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra11027.t1
Unique NameGgra11027.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length278
Homology
BLAST of Ggra11027.t1 vs. uniprot
Match: A0A2V3J7R1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J7R1_9FLOR)

HSP 1 Score: 466 bits (1198), Expect = 1.710e-164
Identity = 233/277 (84.12%), Postives = 251/277 (90.61%), Query Frame = 0
Query:    1 MPTAAVPGYRQSYIEKDRCVRNSTAVKIPGVDMMQGFTLSKAEFEDLFLQTAENVDDAGHTRPGARQKPARFRRKPQRRSPDPSDIDSDSDPSFRPFRGAAKLMDPNINSAEEAAHYADLCRKHAGSLQRCIPPDYDGAGEFFEKAVDARAKHGMFCTSDNADAHVEYAQNLSKRGLTPEAEYHLRSAADIYRMLDARSARKYGDVLLYMAVVIDRQGRLAEAENFYRSALAVYRKNKLSDDNVRVAIDGLSNNLRAQERPDEVDAVVKRHFLGALD 277
            MPTAAVP YRQSYIEKDRCVRNSTAVKIPGVDMMQGFTLSK EFE+LFLQTA+NVDDA  TRP   QK  RFRRKPQR++   ++  +D++PS RPFR AAK+++P I+++EEA  YADLCRKHA SLQRC+PPDY+GAGEFFEKAVDARAKHG+FCT DNADAHVEYAQNLSKRGLTPEAEYHLRSAADIYRMLDARSARKYGDVLLYMAVVIDRQGRLAEAENFYRSALAVYRKNKLSDDNVRV ID LSNNLRAQ R DEVD VVKRHFLGALD
Sbjct:    1 MPTAAVPAYRQSYIEKDRCVRNSTAVKIPGVDMMQGFTLSKTEFENLFLQTADNVDDA--TRPNPHQKQQRFRRKPQRKTTPLNETKTDTNPSSRPFRAAAKVVEPTISNSEEAIDYADLCRKHAASLQRCLPPDYEGAGEFFEKAVDARAKHGLFCTPDNADAHVEYAQNLSKRGLTPEAEYHLRSAADIYRMLDARSARKYGDVLLYMAVVIDRQGRLAEAENFYRSALAVYRKNKLSDDNVRVGIDSLSNNLRAQGRADEVDTVVKRHFLGALD 275          
BLAST of Ggra11027.t1 vs. uniprot
Match: A0A2V3IN04 (AMPK1_CBM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN04_9FLOR)

HSP 1 Score: 130 bits (326), Expect = 7.610e-31
Identity = 78/175 (44.57%), Postives = 103/175 (58.86%), Query Frame = 0
Query:   98 RGAA-KLMDP-NINSA---EEAAHYADLCRKHAGSLQRCIPPDYDGAGEFFEKAVDARAKHGMFCTSDNADAHVEYAQNLSKRGLTPEAEYHLRSAADIYRMLDARSARKYGDVLLYMAVVIDRQGRLAEAENFYRSALAVYRKNKLSDDNVRVAIDGLSNNLRAQERPDEVDAV 267
            RGAA K+  P  +N     +E    AD  R+ A  LQ  +  D  GA E F KA+  R KHG++CTS NA  HV+ A+NLSK     +AE HLR    IY  +DA       D++LY+ VV+DRQ R AEAE  YR AL +Y++N +  +NV +A+  LS NLR Q R  E++AV
Sbjct:  340 RGAAVKISRPMKVNEPKDIDEVNRQADNWRQMARHLQDDLC-DPTGARELFNKAIQHREKHGLWCTSQNAQVHVDLARNLSKADRMKDAELHLRLTLKIYNKIDA-GKEHVADLMLYVGVVVDRQKRRAEAEELYRKALNIYKENDIRSNNVEIAVKNLSLNLRKQNREHEIEAV 512          
BLAST of Ggra11027.t1 vs. uniprot
Match: A0A7S0BLI2 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BLI2_9RHOD)

HSP 1 Score: 62.4 bits (150), Expect = 2.290e-7
Identity = 45/156 (28.85%), Postives = 71/156 (45.51%), Query Frame = 0
Query:  108 INSAEEAAHYADLCRKHAGSLQRCIPPDYDGAGEFFEKAVDARAKHGMFCTSDNADAHVEYAQNLSKRGLTPEAEYHLRSAADIYRMLDARS----------ARKYGDVLLYMAVVIDRQGRLAEAENFYRSALAVYRKN----KLSDDNVRVAID 249
            +NS  +  +   +  K   SLQ+ +        E   +A  AR ++G + T    +  +E A  L K     EAEY+LR A  ++ M  +               + DVL  + +V D+ GR  EAE +YRSAL +YR +    K+ D N  + I+
Sbjct:  404 VNSLMKDWYREAIKLKSENSLQKAV--------ELLRRATFARRRYGAWVTPFTIEFLLEIANMLVKMDQYDEAEYNLRQAMSVWHMKSSAKDLLPEGEKWREETFADVLKMLGIVCDKAGRRLEAEEYYRSALEIYRSHGRDVKIVDTNRLLVIN 551          
The following BLAST results are available for this feature:
BLAST of Ggra11027.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J7R11.710e-16484.12Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IN047.610e-3144.57AMPK1_CBM domain-containing protein n=1 Tax=Gracil... [more]
A0A7S0BLI22.290e-728.85Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 134..275
e-value: 2.4E-14
score: 55.1
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 134..239
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000894_piloncontigtig00000894_pilon:57487..58320 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11027.t1Ggra11027.t1Gracilaria gracilis GNS1m malemRNAtig00000894_pilon 57487..58320 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra11027.t1 ID=Ggra11027.t1|Name=Ggra11027.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=278bp
MPTAAVPGYRQSYIEKDRCVRNSTAVKIPGVDMMQGFTLSKAEFEDLFLQ
TAENVDDAGHTRPGARQKPARFRRKPQRRSPDPSDIDSDSDPSFRPFRGA
AKLMDPNINSAEEAAHYADLCRKHAGSLQRCIPPDYDGAGEFFEKAVDAR
AKHGMFCTSDNADAHVEYAQNLSKRGLTPEAEYHLRSAADIYRMLDARSA
RKYGDVLLYMAVVIDRQGRLAEAENFYRSALAVYRKNKLSDDNVRVAIDG
LSNNLRAQERPDEVDAVVKRHFLGALD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf