Ggra10822.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10822.t1
Unique NameGgra10822.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length1143
Homology
BLAST of Ggra10822.t1 vs. uniprot
Match: A0A2J8AIV3 (DUF4470 domain-containing protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AIV3_9CHLO)

HSP 1 Score: 118 bits (295), Expect = 4.830e-23
Identity = 189/701 (26.96%), Postives = 260/701 (37.09%), Query Frame = 0
Query:  263 AYGGARSVALEEVLIENVGIEGVQCLGPRAPAVFYTPDMGSLR-RGPDVNPIASAVAEAAATSARENVNSAQLVVTMRNCCLRRCGNDRSQIISSGMTIDQGASALIQGCLFTRCGMASVFIKGGCNVSMQHCRIDHGNSGD--------------AGVRVDVNYDGKVNIEHSVFVGKPAQAIIDGFRSLP--PQQRALGGAXXXX----IQKRM---IKAVSRARNA-----------PSIESLRNELE--LSGRSSEHATSSNKTELPNLLISGGAGALYR----------------QLGSQYTATE-YPIGNTYGKDVL--RFAESKRIGK-REALVVLGACGDIRNLVETICALEEKQ----LQKVRFLLNDISIWILARNITLLQLAC-VSWPNRREGKVKQGRGQTKGKRPNHHHKRAARIWLHAWGSIALTPGDRSALDKVLTNLTAGKLPEWLSL-PSTDVRNA----------------LVSCWSEWASCKRTLREVRNERDALA-----TLTTAGRNVAMMKAALAAGLRET---EACELLRNAELL--KGGGEKVNPT-LLTSGLHYNMY-ESSIFRAIDMRTFVQGDVNKLHAAACDVMNAKGSIVARALLSGVVNIEIQPGDLTHVLRSQRDV----------------------------DAVELSNALDYISKPACLISAASCLS 844
            AYGGARSV L   +I     EGV   G    A     D   L  RGP  +  A A  E A    R+   S Q  V +  C +  C          G++ D GAS + +GC        S FIKGG +  +  C++ +  +                +GV V VNY G V++  + F G+   A I+  +     P+  A GG         + KRM    K V+  RN+           PS+ESL   L   L G  +  A +  + E       GG   L R                      TA E Y IGNT G DV   R       G  R A V+LGACGDIRNL+ T  A           ++ F LND ++ +LARN  LL +A   S P                  P+          L  W   AL+      L + L  L +   P WL+  P  +   A                L      WA C  ++ +V  +RDA+             ++A ++A+L AG  E    E  E +R   L   +      NPT LL   L Y +Y  SSIFRA+ +     G      A     +  +   V RAL  G   + + PGD+   + S                                D ++ SN  DY+S PA + +AA  L+
Sbjct:  250 AYGGARSVLLRNSVILRSAQEGVLLAGTFTNAATDAQDDAGLNGRGPMRSESARAATEQAHAWGRQQGTSLQ--VQLLGCTIAHCRQ-------FGVSADSGASLVARGCRLELNDPYSFFIKGGTDARILGCQVVYSGAPSKCAWRGFHTLAPKQSGVVVGVNYGGSVDLIGNAFGGREDLAYIEEIKQAKHLPKAGAKGGREAGPMAQALAKRMGLWSKPVAAERNSHHEPGGGAAGLPSLESLAQRLPAWLLGEQATEAEAQVEAEAGAAAPGGGTAQLRRWKPAPALLQRTCLNVAHFAWAPTAHEFYAIGNTLGVDVSGGRLGVGADAGGLRAARVLLGACGDIRNLLPTAHAAAAAAGPGGPTRLAFTLNDGNLSMLARNAVLLHMAADASVP------------------PD--------AVLAVWACHALSAPHAELLGRSLRALASEPWPAWLAAAPGLEGATAGAXXXXXXXXXEAEAGLRGVLRAWAGCGLSVADVLAQRDAMQGGLPIRAQAVELSMAGVRASLGAGGAEQLRGEVAEYVRRGSLRPEEAALSATNPTFLLGRELQYTVYFSSSIFRAVPL-----GPGGTARARLLSTLGPQLEAVGRALRGGAATVTLVPGDILAAMTSAPSAXXXXXXXXXXXXXXXXXXXSPAAAACRFDFIDCSNVADYVSLPALVQAAAPLLA 910          
The following BLAST results are available for this feature:
BLAST of Ggra10822.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2J8AIV34.830e-2326.96DUF4470 domain-containing protein (Fragment) n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..112
e-value: 2.4E-13
score: 52.1
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 5..107
IPR027974Domain of unknown function DUF4470PFAMPF14737DUF4470coord: 522..635
e-value: 3.6E-11
score: 43.0
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 224..425

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000192_piloncontigtig00000192_pilon:110542..114063 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10822.t1Ggra10822.t1Gracilaria gracilis GNS1m malemRNAtig00000192_pilon 110542..114063 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10822.t1 ID=Ggra10822.t1|Name=Ggra10822.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=1143bp
MTTTAKDLFALGDYLAAEQAFLDAAKDAKSSADRSLQLSNASQCVLKLFL
HERAVQHAREAILLDPRNAKAHYRLAVAYAAMPLPQNAIDAARRCCDIAM
ANARAFALIRSISPDKHVPEVVGFEVVSRHDHPVSARAADLLRHVLGSQV
VLVTNAIDIVFGCGGVAVLVPNCQIPVLSILPTHIVGLDDSATIHAFSRP
HALYLRLSSLSAWCMRFEGASDAMICTESDLALIDCSIYDHDEHGILVVE
DTGTALTAFCIIAYGGARSVALEEVLIENVGIEGVQCLGPRAPAVFYTPD
MGSLRRGPDVNPIASAVAEAAATSARENVNSAQLVVTMRNCCLRRCGNDR
SQIISSGMTIDQGASALIQGCLFTRCGMASVFIKGGCNVSMQHCRIDHGN
SGDAGVRVDVNYDGKVNIEHSVFVGKPAQAIIDGFRSLPPQQRALGGARS
APIQKRMIKAVSRARNAPSIESLRNELELSGRSSEHATSSNKTELPNLLI
SGGAGALYRQLGSQYTATEYPIGNTYGKDVLRFAESKRIGKREALVVLGA
CGDIRNLVETICALEEKQLQKVRFLLNDISIWILARNITLLQLACVSWPN
RREGKVKQGRGQTKGKRPNHHHKRAARIWLHAWGSIALTPGDRSALDKVL
TNLTAGKLPEWLSLPSTDVRNALVSCWSEWASCKRTLREVRNERDALATL
TTAGRNVAMMKAALAAGLRETEACELLRNAELLKGGGEKVNPTLLTSGLH
YNMYESSIFRAIDMRTFVQGDVNKLHAAACDVMNAKGSIVARALLSGVVN
IEIQPGDLTHVLRSQRDVDAVELSNALDYISKPACLISAASCLSRPGGVL
SLHTMMAQIVERNVQSLRVDWKEYFLHGANSEDLTEVLGLRSIQIGSETA
DLNGDGINARSRWVYQAKSYDLSQTGNHDKLRTSMMNAAKAWCRGPSPAR
QSGFIRSQIAAWPSAIAALHVVSTSMSSAESQVTELVTEMCNASPAIRPF
ELELNAHAAIMTGKESDLVLATLRLDGLLNRPTIGMQVHLILQLGLNLGE
DNEETIWLFDVFQSSASHGVCEVIVKKDDVLRMSSLSARLCVVESNKGVL
KGETQTATCLVRGGTLKTRELSDSEITAMRKVLFPDPKFFPS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR027974DUF4470
IPR011050Pectin_lyase_fold/virulence