Ggra10818.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10818.t1
Unique NameGgra10818.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length325
Homology
BLAST of Ggra10818.t1 vs. uniprot
Match: A0A2V3IQ23 (Proteasome-associated protein ECM29-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ23_9FLOR)

HSP 1 Score: 127 bits (319), Expect = 7.560e-29
Identity = 73/139 (52.52%), Postives = 89/139 (64.03%), Query Frame = 0
Query:  111 EQRHDLVGNLVWSLTSGKRAAAKFPSDQGVLLEFKGVDVQSNSAGARSATYRALCSLAQDMGQQELVYKLLDL-----------------------------LRTHLRNLLLWLYVYCHDSMESARIAMGSIISAVVKA 220
            + + DLV +LV SLT+GK+AAA  P D+GVLLEF GVDV   S GARSATY+ LC+LAQDMG+ ELVYK +DL                             LR H+++LL  LYVYC+D  ES R+AMGS+ISAVVKA
Sbjct: 1000 KDQKDLVASLVRSLTTGKKAAATVPGDRGVLLEFGGVDVNVKSTGARSATYKELCNLAQDMGEPELVYKFMDLAGHAALWNSRKGAALAGSALLNTDIAAEQLRPHVKSLLPRLYVYCYDPSESVRMAMGSVISAVVKA 1138          
BLAST of Ggra10818.t1 vs. uniprot
Match: R7QLZ0 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLZ0_CHOCR)

HSP 1 Score: 108 bits (270), Expect = 2.180e-22
Identity = 66/139 (47.48%), Postives = 81/139 (58.27%), Query Frame = 0
Query:  112 QRHDLVGNLVWSLTSGK-RAAAKFPSDQGVLLEFKGVDVQSNSAGARSATYRALCSLAQDMGQQELVYKLLDL-----------------------------LRTHLRNLLLWLYVYCHDSMESARIAMGSIISAVVKA 220
            Q+ DLV  LV SLTSGK RAA+  P DQG +LE  G++    + G RSATY+ LC++AQDMGQ ELVYK +DL                             LR H++ LL  LYVYC+D  E  RIAMGS++ AVVKA
Sbjct:  783 QQQDLVSTLVRSLTSGKARAASTVPGDQGAILELGGLNTSEKTVG-RSATYKELCTIAQDMGQPELVYKFMDLAGHAALWNNRRGAALAGGALLDSGAAAEQLRPHVKTLLPKLYVYCYDPTEQVRIAMGSVLKAVVKA 920          
BLAST of Ggra10818.t1 vs. uniprot
Match: A0A0E0BNM0 (Uncharacterized protein n=1 Tax=Oryza glumipatula TaxID=40148 RepID=A0A0E0BNM0_9ORYZ)

HSP 1 Score: 63.9 bits (154), Expect = 1.610e-7
Identity = 61/252 (24.21%), Postives = 100/252 (39.68%), Query Frame = 0
Query:  110 AEQRHDLVGNLVWSLTSG--KRAAAKFPSDQGVLLEFKGVDVQSNSAGARSATYRALCSLAQDMGQQELVYKLLDL---------------------------LRTHLRNLLLWLYVYCHD---------------------------------------------SMESARIAMGSIISAVVKAFEEVKDSLKDFWYYTLSAMDDIKESVQKSAQGSGKVLSELSIYLCNPGYVDEENSAPAVDVVLSVLM 287
            A  +  LV  LV +L+    K+ A K   D  V   F+   + +N  G + +TY+ LCSLA +MGQ +L+YK +DL                           L+ HL  L+  L  Y +D                                             S E++ +A+  II    + + +V   L+  W  T  AMDDIKE+V+ +     +V+S L++ LC+       ++   +++VL  L+
Sbjct:  347 ASMKEQLVHALVNTLSGAAKKKRAIKLMEDSEV---FQEGTIGNNPTGGKLSTYKELCSLANEMGQPDLIYKFMDLANYQAAINSKRGAAFGFSKIAKQAGEALQPHLHTLIPRLVRYQYDPDKNIQDSMAHIWKLIVADPKKTIDEHYDLIVEDLLVQSGSRLWRSREASCLALADIIQG--RRYGQVSKHLRKIWITTFRAMDDIKETVRNAGDSLCRVVSLLTVRLCDVSLTTSSDANETMNIVLPYLL 593          
BLAST of Ggra10818.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: proteasome adapter and scaffold protein ECM29-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI00192A0C53 (LOW QUALITY PROTEIN: proteasome adapter and scaffold protein ECM29-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI00192A0C53)

HSP 1 Score: 58.9 bits (141), Expect = 6.320e-6
Identity = 64/214 (29.91%), Postives = 97/214 (45.33%), Query Frame = 0
Query:   62 LLLLSVFARFDPARRQQRRVRMYAEVFNREEASAWCAGFQNRLGLLLAAE------------QRHDLVGNLVWSLT-SGKRAAA-KFPSDQGVLLEFKGVDVQSNSAGARSATYRALCSLAQDMGQQELVYKLLDL---------------------------LRTHLRNLLLWLYVYCHDSMESARIAMGSIISAVV----KAFEEVKDSLKD 230
            LL L+++  +DP  +Q     +  E+   +EA +   G QN L   LA++             +H+LV  LV +LT SGKR  A K   D  V   F+   +     G + +TY+ LCSLA +MGQ +L+YK +DL                           L+ HL+ L+  L  Y +D  ++ + AMG I  ++V    K  EE  D + D
Sbjct:  396 LLSLTMYCGYDPKIQQ-----LLPEI---QEAFSHLLGDQNDLTQELASKGMSIVYELGDPSMKHELVNALVGTLTGSGKRKRAIKLMGDSEV---FQEGSIGETLGGGKLSTYKELCSLANEMGQPDLIYKFMDLANYQASLNSKRGAAFGFSKIAKHAGDALQPHLQLLIPRLVRYQYDPDKNVQDAMGHIWKSIVADTKKTIEEHFDIIID 598          
The following BLAST results are available for this feature:
BLAST of Ggra10818.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IQ237.560e-2952.52Proteasome-associated protein ECM29-like n=1 Tax=G... [more]
R7QLZ02.180e-2247.48Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A0E0BNM01.610e-724.21Uncharacterized protein n=1 Tax=Oryza glumipatula ... [more]
LOW QUALITY PROTEIN: proteasome adapter and scaffold protein ECM29-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI00192A0C536.320e-629.91LOW QUALITY PROTEIN: proteasome adapter and scaffo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 107..324
e-value: 7.8E-6
score: 26.0
IPR024372Proteasome component Ecm29PANTHERPTHR23346:SF19PROTEASOME ADAPTER AND SCAFFOLD PROTEIN ECM29coord: 109..324
NoneNo IPR availablePANTHERPTHR23346TRANSLATIONAL ACTIVATOR GCN1-RELATEDcoord: 109..324
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 50..54
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 28..49
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..73
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 74..324
NoneNo IPR availableTMHMMTMhelixcoord: 28..50
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 150..315

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000192_piloncontigtig00000192_pilon:61165..62636 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10818.t1Ggra10818.t1Gracilaria gracilis GNS1m malemRNAtig00000192_pilon 61165..62636 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10818.t1 ID=Ggra10818.t1|Name=Ggra10818.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=325bp
MQPALQGVWATIGAASLTERLRSVVSDFVNLAGLVTLTTVLAFLLPTALG
PPTVRVVYEFELLLLSVFARFDPARRQQRRVRMYAEVFNREEASAWCAGF
QNRLGLLLAAEQRHDLVGNLVWSLTSGKRAAAKFPSDQGVLLEFKGVDVQ
SNSAGARSATYRALCSLAQDMGQQELVYKLLDLLRTHLRNLLLWLYVYCH
DSMESARIAMGSIISAVVKAFEEVKDSLKDFWYYTLSAMDDIKESVQKSA
QGSGKVLSELSIYLCNPGYVDEENSAPAVDVVLSVLMLSITHSADEVRAL
VSNTLSEIIRHVRRELRSCVPDFI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR024372Ecm29
IPR016024ARM-type_fold