Ggra10638.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10638.t1
Unique NameGgra10638.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length320
Homology
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BLAST of Ggra10638.t1 vs. uniprot
Match: A0A2V3J438 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J438_9FLOR)

HSP 1 Score: 186 bits (472), Expect = 1.720e-53
Identity = 110/275 (40.00%), Postives = 151/275 (54.91%), Query Frame = 0 
Query:   47 LSSAAVVLDSVALAALQAGHLGDAPFCMQLAGTLVVLPWMPYLYRSALLSRAPRALVLLAALAWA--VVCLLPTFWALLLELFTGHRREGTSWVAGVWRIYAIMALWVLLALLNERVIRPWWTTNSDSFLAPFRRNSVAAQAHSMAVNRRASVLDTIMQEMVTVSKRKILTTRTLETKTSKLQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAITDVDGLRNDILVLKKEVHNCEQQLQPLQHRWEQSLHIENHTRFYR 319
            LS+ AV+L+S+ LAAL A  LG AP   Q+  TL+V  W+PY                         +  +LPT  A ++ELFTGHRR+  +  + +WR+YAI+ALWV + +LNER+IRPWW + S   L  +R +SV+++AH++AVN+RAS LD IM++MV +SKRK+L  R ++TKT +LQ+                                           +       L  DI  LK +VH  + QLQPLQ RWEQSL+IENHTRFYR
Sbjct:   29 LSATAVLLNSITLAALLANRLGTAPLSYQITLTLLVSAWLPYXXXXXXXXXXXXXXXXXXXXXXXXLISSVLPTINASVVELFTGHRRKEANLFSAIWRVYAILALWVAIGVLNERLIRPWWQSTSPRLLGGWRAHSVSSRAHNLAVNQRASALDHIMEQMVAISKRKLLAQRAIQTKTEQLQKTKSSLDNSKQMLTSAQQKAKDAHNDDNQLLVMSLTQMVD----NTQVQCQVLEQDIQRLKVDVHTSQTQLQPLQQRWEQSLNIENHTRFYR 299
The following BLAST results are available for this feature:
BLAST of Ggra10638.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J4381.720e-5340.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 219..297
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..39
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 46..66
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 135..157
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..90
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 124..134
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 91..101
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 67..71
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 102..123
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 158..319
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..45
NoneNo IPR availableTMHMMTMhelixcoord: 139..158
NoneNo IPR availableTMHMMTMhelixcoord: 102..124
NoneNo IPR availableTMHMMTMhelixcoord: 73..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:464987..465946 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10638.t1Ggra10638.t1Gracilaria gracilis GNS1m malemRNAtig00000904_pilon 464987..465946 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10638.t1 ID=Ggra10638.t1|Name=Ggra10638.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MTELLTSPTATQPTTQPAEQPAEQPAPEPAHQPPPPSLFSRVPTPALSSA
AVVLDSVALAALQAGHLGDAPFCMQLAGTLVVLPWMPYLYRSALLSRAPR
ALVLLAALAWAVVCLLPTFWALLLELFTGHRREGTSWVAGVWRIYAIMAL
WVLLALLNERVIRPWWTTNSDSFLAPFRRNSVAAQAHSMAVNRRASVLDT
IMQEMVTVSKRKILTTRTLETKTSKLQQNQNNVEELKLSLKEHKKKVQEA
DNADEKQQRLDDVQELMDRLQHAITDVDGLRNDILVLKKEVHNCEQQLQP
LQHRWEQSLHIENHTRFYR*
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