Ggra10458.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10458.t1
Unique NameGgra10458.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length161
Homology
BLAST of Ggra10458.t1 vs. uniprot
Match: A0A2V3J4X5 (Histone H3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4X5_9FLOR)

HSP 1 Score: 127 bits (319), Expect = 2.370e-34
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = 0
Query:    1 MEIRKYQRSVNLLIRRLPFARLVKEITQKFHHDLRWRVDAIEALQVSAEAFVVNLMEDANLCAIHGKRTSSNKGNLSKHIATR 83
            MEIRKYQR+ NLLIRRLPFARLVKEITQ FHHDLRWRVDA+EALQ +AE+FVV+LMEDANLCAIHGKR +    ++  H+A R
Sbjct:   79 MEIRKYQRTTNLLIRRLPFARLVKEITQSFHHDLRWRVDAVEALQAAAESFVVSLMEDANLCAIHGKRVTIMPRDI--HLARR 159          
BLAST of Ggra10458.t1 vs. uniprot
Match: R7QD76 (Similar to Histone H3 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QD76_CHOCR)

HSP 1 Score: 114 bits (286), Expect = 2.370e-29
Identity = 56/83 (67.47%), Postives = 68/83 (81.93%), Query Frame = 0
Query:    1 MEIRKYQRSVNLLIRRLPFARLVKEITQKFHHDLRWRVDAIEALQVSAEAFVVNLMEDANLCAIHGKRTSSNKGNLSKHIATR 83
            MEIRKYQRS NLL+RRLPFARLVKE+T  FHH LRWRVDA+EALQ ++E F+V +MEDANLCA+HGKR +    ++  H+A R
Sbjct:   81 MEIRKYQRSTNLLLRRLPFARLVKEVTTTFHHSLRWRVDALEALQEASEDFLVGVMEDANLCAMHGKRITIMPKDI--HLARR 161          
BLAST of Ggra10458.t1 vs. uniprot
Match: A0A5J4Z7T8 (Histone H3.3 type a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7T8_PORPP)

HSP 1 Score: 108 bits (271), Expect = 1.300e-27
Identity = 53/83 (63.86%), Postives = 68/83 (81.93%), Query Frame = 0
Query:    1 MEIRKYQRSVNLLIRRLPFARLVKEITQKFHHDLRWRVDAIEALQVSAEAFVVNLMEDANLCAIHGKRTSSNKGNLSKHIATR 83
            MEIRK+Q+S +LLIRRLPFARLVKEITQ +HH LRW+VDA++ALQ +AE ++V L+EDANLCAIH +R +    +L  H+A R
Sbjct:   38 MEIRKFQKSTDLLIRRLPFARLVKEITQHYHHGLRWQVDAVQALQYAAEDYLVGLLEDANLCAIHARRVTIMPRDL--HLARR 118          
BLAST of Ggra10458.t1 vs. uniprot
Match: M2VSS2 (Histone H3 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VSS2_GALSU)

HSP 1 Score: 106 bits (265), Expect = 1.640e-26
Identity = 49/70 (70.00%), Postives = 61/70 (87.14%), Query Frame = 0
Query:    1 MEIRKYQRSVNLLIRRLPFARLVKEITQKFHHDLRWRVDAIEALQVSAEAFVVNLMEDANLCAIHGKRTS 70
            MEIRK+Q+S  LLIR+LPFARLVKEITQ +HH+LRW+V+A+ ALQ SAE ++V L+EDANLCAIH KR +
Sbjct:   54 MEIRKFQKSTELLIRKLPFARLVKEITQHYHHELRWQVEAVLALQTSAEDYLVGLLEDANLCAIHAKRVT 123          
BLAST of Ggra10458.t1 vs. uniprot
Match: A9BL48 (Cenp-A n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A9BL48_HEMAN)

HSP 1 Score: 97.1 bits (240), Expect = 5.800e-23
Identity = 49/89 (55.06%), Postives = 66/89 (74.16%), Query Frame = 0
Query:    2 EIRKYQRSVNLLIRRLPFARLVKEITQKFHHDLRWRVDAIEALQVSAEAFVVNLMEDANLCAIHGKRTSSNKGNLSKHIATRHEHRKDF 90
            EIRK+Q+S +LLI RLPFARLVKEIT +FHH L+W+  A+EALQ +AE +++ LMEDANL A+H KR +    ++  H+A R    K+F
Sbjct:   40 EIRKFQKSTDLLIHRLPFARLVKEITLEFHHSLQWQSVALEALQYAAEDYIIGLMEDANLSALHAKRVTVMPKDI--HLAKRIRGNKNF 126          
BLAST of Ggra10458.t1 vs. uniprot
Match: A9VDC3 (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VDC3_MONBE)

HSP 1 Score: 95.9 bits (237), Expect = 2.890e-22
Identity = 45/71 (63.38%), Postives = 58/71 (81.69%), Query Frame = 0
Query:    2 EIRKYQRSVNLLIRRLPFARLVKEITQKFHHD--LRWRVDAIEALQVSAEAFVVNLMEDANLCAIHGKRTS 70
            EIR+YQ+S NLLIR+LPFAR+V+E+ Q F+H   LRW+  AIEALQ +AEA++V L+ED NLCAIH KR +
Sbjct:   59 EIRRYQKSTNLLIRKLPFARVVREVAQDFYHTAPLRWQAKAIEALQEAAEAYIVRLLEDGNLCAIHAKRVT 129          
BLAST of Ggra10458.t1 vs. uniprot
Match: A0A5J4XYP6 (Histone H3 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XYP6_9CHLO)

HSP 1 Score: 95.1 bits (235), Expect = 4.420e-22
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0
Query:    2 EIRKYQRSVNLLIRRLPFARLVKEITQKFHHDLRWRVDAIEALQVSAEAFVVNLMEDANLCAIHGKRTS 70
            EIRKYQ+S  LLIRR PF RLV+EIT+ F  D RW+V A+EALQ +AEA++V ++ED+NLCAIH KR +
Sbjct:   52 EIRKYQKSTELLIRRAPFQRLVREITRDFQADFRWQVRAVEALQEAAEAYLVGMLEDSNLCAIHAKRVT 120          
BLAST of Ggra10458.t1 vs. uniprot
Match: A0A0M0JX57 (Histone H3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JX57_9EUKA)

HSP 1 Score: 94.0 bits (232), Expect = 4.910e-22
Identity = 47/74 (63.51%), Postives = 61/74 (82.43%), Query Frame = 0
Query:    2 EIRKYQRSVNLLIRRLPFARLVKEITQKFHH-----DLRWRVDAIEALQVSAEAFVVNLMEDANLCAIHGKRTS 70
            EIRKYQRS +LLIR+LPFARLV+EITQ ++      + RW+V+A+ ALQ +AEA++V+LMEDANLCAIH KR +
Sbjct:   12 EIRKYQRSTDLLIRKLPFARLVREITQTYNSAPAEGEKRWQVEALMALQEAAEAYLVHLMEDANLCAIHAKRVT 85          
BLAST of Ggra10458.t1 vs. uniprot
Match: A0A2V3IHD9 (Metallothionein expression activator n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHD9_9FLOR)

HSP 1 Score: 95.5 bits (236), Expect = 1.120e-21
Identity = 52/92 (56.52%), Postives = 57/92 (61.96%), Query Frame = 0
Query:   68 RTSSNKGNLSKHIATRHEHRKDFVCPFNGCNRRFAKKYNMLRHLSASGVHRASPMAAAKMAGKRRASDRAKWSSMELDLAKFLAEQCRPGLV 159
            +TSSNKGNLSKHIATRHEHR                              R SP+A  K+ GKRRASDRAKWSSMELDLAKFLAE+CRP L+
Sbjct:   90 QTSSNKGNLSKHIATRHEHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTSPIAVVKVPGKRRASDRAKWSSMELDLAKFLAEKCRPALM 181          
BLAST of Ggra10458.t1 vs. uniprot
Match: Q98SC6 (Centromeric histone-3 like protein n=1 Tax=Guillardia theta TaxID=55529 RepID=Q98SC6_GUITH)

HSP 1 Score: 92.0 bits (227), Expect = 2.640e-21
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 0
Query:    1 MEIRKYQRSVNLLIRRLPFARLVKEITQKFHHDLRWRVDAIEALQVSAEAFVVNLMEDANLCAIHGKRTSSNKGNLSKHIATRHEH 86
            ++IRK+Q+S +LLI RLPFARLVKEI+ K+HH L W+  A+EALQ ++E +++ L++DANL AIH KR +    +L      R EH
Sbjct:   18 VDIRKFQKSTDLLIHRLPFARLVKEISLKYHHSLNWQQVAVEALQFASEDYIIGLLQDANLAAIHAKRVTVMPKDLKLAKIIRGEH 103          
The following BLAST results are available for this feature:
BLAST of Ggra10458.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4X52.370e-3475.90Histone H3 n=1 Tax=Gracilariopsis chorda TaxID=448... [more]
R7QD762.370e-2967.47Similar to Histone H3 n=1 Tax=Chondrus crispus Tax... [more]
A0A5J4Z7T81.300e-2763.86Histone H3.3 type a n=1 Tax=Porphyridium purpureum... [more]
M2VSS21.640e-2670.00Histone H3 n=1 Tax=Galdieria sulphuraria TaxID=130... [more]
A9BL485.800e-2355.06Cenp-A n=1 Tax=Hemiselmis andersenii TaxID=464988 ... [more]
A9VDC32.890e-2263.38Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A5J4XYP64.420e-2263.77Histone H3 n=1 Tax=Trebouxia sp. A1-2 TaxID=260899... [more]
A0A0M0JX574.910e-2263.51Histone H3 n=1 Tax=Chrysochromulina tobinii TaxID=... [more]
A0A2V3IHD91.120e-2156.52Metallothionein expression activator n=1 Tax=Graci... [more]
Q98SC62.640e-2151.16Centromeric histone-3 like protein n=1 Tax=Guillar... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000164Histone H3/CENP-APRINTSPR00622HISTONEH3coord: 31..49
score: 44.97
coord: 9..26
score: 70.89
coord: 49..65
score: 69.31
IPR000164Histone H3/CENP-ASMARTSM00428h35coord: 1..85
e-value: 5.3E-24
score: 95.7
IPR000164Histone H3/CENP-APANTHERPTHR11426HISTONE H3coord: 2..70
IPR000164Histone H3/CENP-APROSITEPS00959HISTONE_H3_2coord: 18..26
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 1..86
e-value: 1.5E-30
score: 107.8
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 2..69
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 2..68
e-value: 1.1E-22
score: 80.8
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 90..112
e-value: 0.0043
score: 17.4
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 90..122
score: 9.161507
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 88..117
e-value: 7.2E-8
score: 33.9
NoneNo IPR availablePANTHERPTHR11426:SF232HISTONE H3.1coord: 2..70
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 76..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:359600..361500 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10458.t1Ggra10458.t1Gracilaria gracilis GNS1m malemRNAtig00000108_pilon 359600..361500 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10458.t1 ID=Ggra10458.t1|Name=Ggra10458.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=161bp
MEIRKYQRSVNLLIRRLPFARLVKEITQKFHHDLRWRVDAIEALQVSAEA
FVVNLMEDANLCAIHGKRTSSNKGNLSKHIATRHEHRKDFVCPFNGCNRR
FAKKYNMLRHLSASGVHRASPMAAAKMAGKRRASDRAKWSSMELDLAKFL
AEQCRPGLVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000164Histone_H3/CENP-A
IPR009072Histone-fold
IPR007125Histone_H2A/H2B/H3
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf