Ggra10434.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra10434.t1
Unique Name	Ggra10434.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	289

Homology

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BLAST of Ggra10434.t1 vs. uniprot
Match: A0A2V3J4W8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4W8_9FLOR)

HSP 1 Score: 199 bits (507), Expect = 1.740e-59
Identity = 117/251 (46.61%), Postives = 155/251 (61.75%), Query Frame = 0

Query:   40 LSRLPDDVLLHICRFVPSATLHALCSASSRWRQLIQRSVWPARLATLLGVRAVRFRARTALPRTLRVLARPASAP-PAA---WLQLLRVLERAPSARVLCVCVLLGAQPQPLSVTALALRYAVSVNDILRANALFAEHQLASRTHVYVPLRDERALCAATGRGSAAHTPVLVRDVTLSNKYFLVVRFCGAHERADSPEAMRASQRTYVRQLLVRLMAKGLSVLEDEVRYYLEENEYDVAKAYKQLLDDHQF 286
            L+ LP DVLL I   + +  LHA+   S  W + +   +WP+R+A++L VR VRF+     P+    +  PA  P P +   W  ++      PS+R L +C+ L A     S+TALALRYAVSV+DILRANALFAEHQLA RTH+YVPLR +  L   TG   A   P L+ DVTLS+KYFLVV    + +   +P   R  +  ++RQL+ + M  GL V EDE+RYYL++N Y+V  AYKQLL DHQF
Sbjct:   25 LNDLPHDVLLLIGSHMHTDALHAMSQLSPFWHRTVHTELWPSRIASILSVRKVRFQT----PQQRNPIHHPALCPLPTSSHTWHAIVHTFRTYPSSRCLHLCIQLAAND---SITALALRYAVSVHDILRANALFAEHQLACRTHLYVPLRTDEHLVKLTGVPRARQQPFLISDVTLSSKYFLVVDVRTSDDNVVTPPPRRCLRHVFIRQLVAKFMTMGLVVHEDEIRYYLQDNHYNVGNAYKQLLTDHQF 268

The following BLAST results are available for this feature:

BLAST of Ggra10434.t1 vs. uniprot

BLAST of Ggra10434.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J4W8	1.740e-59	46.61	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 43..82 e-value: 1.5E-4 score: 31.1
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 40..76 e-value: 2.7E-6 score: 27.1
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 37..82 score: 9.788908
None	No IPR available	GENE3D	1.20.1280.50		coord: 31..80 e-value: 1.8E-6 score: 29.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..33
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 30..78

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000108_pilon	contig	tig00000108_pilon:304260..305126 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10434.t1	Ggra10434.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000108_pilon 304260..305126 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra10434.t1 ID=Ggra10434.t1|Name=Ggra10434.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=289bp
MSAPRPPPADADAPDVPDAPDVPDARDARDARDAPNAPALSRLPDDVLLH
ICRFVPSATLHALCSASSRWRQLIQRSVWPARLATLLGVRAVRFRARTAL
PRTLRVLARPASAPPAAWLQLLRVLERAPSARVLCVCVLLGAQPQPLSVT
ALALRYAVSVNDILRANALFAEHQLASRTHVYVPLRDERALCAATGRGSA
AHTPVLVRDVTLSNKYFLVVRFCGAHERADSPEAMRASQRTYVRQLLVRL
MAKGLSVLEDEVRYYLEENEYDVAKAYKQLLDDHQFAP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR036047	F-box-like_dom_sf