Ggra10402.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10402.t1
Unique NameGgra10402.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length1064
Homology
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BLAST of Ggra10402.t1 vs. uniprot
Match: R7Q835 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q835_CHOCR)

HSP 1 Score: 135 bits (340), Expect = 2.290e-28
Identity = 58/106 (54.72%), Postives = 74/106 (69.81%), Query Frame = 0 
Query:   32 ESNCQCDCCYVIGTRSRTECIPPTATSFSVSSCSLCDVDTCAKRYPTACAQVSSIATATCIKREGWMLRLVPVTFIAIVVCLVLYGLCVRKFDGYHDDNLVHDSRP 137
            E  CQCDCCYV G   RT C+PP  TSF V+SC  C V  CA R+P ACAQ S++    C++R+GW+LRLVPV FI+   CL++YGLC + +DGYHDD+  H  +P
Sbjct:   29 EDTCQCDCCYVAGQSGRTRCVPPVDTSFPVASCPDCIVSACATRFPLACAQTSAVVNTDCVERKGWLLRLVPVLFISASACLLIYGLCFKTYDGYHDDSR-HSPQP 133
The following BLAST results are available for this feature:
BLAST of Ggra10402.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7Q8352.290e-2854.72Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1015..1063
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 932..986
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 257..289
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 940..967
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1020..1039
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 412..451
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1046..1063
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 694..715
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 968..986
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 367..381
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 643..725
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 367..391
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 97..118
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..96
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 119..1063
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availableTMHMMTMhelixcoord: 96..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:230623..233814 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10402.t1Ggra10402.t1Gracilaria gracilis GNS1m malemRNAtig00000108_pilon 230623..233814 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10402.t1 ID=Ggra10402.t1|Name=Ggra10402.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=1064bp
MRSYRLLFVAVSVVLALHAVHAQPRFLSRLLESNCQCDCCYVIGTRSRTE
CIPPTATSFSVSSCSLCDVDTCAKRYPTACAQVSSIATATCIKREGWMLR
LVPVTFIAIVVCLVLYGLCVRKFDGYHDDNLVHDSRPRVLERASYHTFAA
IQPPNPSFDAASRPLLSTIVEEQDEHDAAAPPSDQLSSSHPSEQQPSPSI
EFVNAANALEQASLQTPNACPSQTAGQQHVAAHHQSHLYIESTRELSYSI
HTSSGHAVLPINTDSPNHRQNLNVQPSPTKQAASDSPQQLYANVSDSHLK
QATPPLEAALVEQFHIAAYAKQSRHPARVGNTEQVCDAPSEQAIIQIDHT
FVAVEGHNMRPRVDTKQVQDQAVSPQKTEVQPETEPDLLKPDEAAETTLA
TVQESKLCASEATLPGADVKQSDHSPGSPHVVQDRRALDSAPAFASGPDQ
TATEPVHNSAAAKIEVLGHVSPGSEFLDNGTNRLDAVTEGVAQDGKASQA
TESVSKTTSSVQAASITVSSDVEWDPTTLDGVEPAVTDYDSGLPGIDAQG
TGVTEGDEETKDVRSVKSDPVEVLHVCESIPFHSVGNKDVLRQSNTEVEA
NAICFALKSKNPVSAEDSEPVPLLEIQQRGEQVENLNVGVEAVNSTEYSE
DASNGPHLEGIDQEESAPATRLHVIPEPMDQEESPSLTGIDDATEKSAAD
EGATTDVEKNEGDEEIPSSFVSGRGERDVPVVGEGRHEEIIEIDSIAIGS
TSNDIRAQSEEVVLTEALSQAEHINAVNPPTDIDIVYAVETQQNDLEPTT
SIRAVSALPELAGFTSGRHPDEGKQDITEDVGKSYLHESLGDGDGSMRQA
ESPMSRVGTAVDAESSVTVTGFEEVEIVVDSPGEIEQRNKTGNQNEIERE
LIDGFEDRNGDLQQGDEKLVLDTIETDIVEDCSETRTAAAEAETEAQQED
QDTSSTATRSATAGKFHEPNTSKHENYTHTEEQTQEERIDCDVKEPVPTT
AFSVAQHNAGLLDTPVDESSPLPDSVNRQETTSDANVGELTDPIRNIIHA
QTTPGLDNPNFIQ*
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