Ggra10284.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10284.t1
Unique NameGgra10284.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length475
Homology
BLAST of Ggra10284.t1 vs. uniprot
Match: A0A2V3IEU1 (Chlorophyll a-b binding protein, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEU1_9FLOR)

HSP 1 Score: 410 bits (1053), Expect = 3.910e-140
Identity = 191/218 (87.61%), Postives = 207/218 (94.95%), Query Frame = 0
Query:  257 MFAFVSGFAGVPATRASAFTGASFAARHAPVRTARFSMAASKSVPFLPQPDKLDGSMPGDVGFDPFGFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSASNPLYAVSKVGWLPIVQILLFIAVCEAATGWKKVYEDKCEDPGNYGFDPLNLAGTPEKKRRQQTAEIKNGRLAMVAIGGAIHHCLLTNMGLVEQIQSGKWFGGYYVH 474
            MFAFVSGFAG+PATRAS+F GA F+  H+PVRTARFSMAASKSVPFLPQP KLDG++PGDVGFDP GFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEAVYHLPNE+YSA+NPL A+ KVGWLP++QILLFIA CEAATG+KKVYE KCEDPGN+GFDPLNLAGTPEKK+R+QTAEIKNGRLAMVAIGGAIHH LLTNMGLVEQIQSG+WFGGYYVH
Sbjct:    1 MFAFVSGFAGLPATRASSFNGAQFSQTHSPVRTARFSMAASKSVPFLPQPAKLDGTLPGDVGFDPLGFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEMYSATNPLDAIGKVGWLPVIQILLFIAACEAATGYKKVYEQKCEDPGNFGFDPLNLAGTPEKKKRRQTAEIKNGRLAMVAIGGAIHHALLTNMGLVEQIQSGRWFGGYYVH 218          
BLAST of Ggra10284.t1 vs. uniprot
Match: R7QMN6 (Light-harvest protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMN6_CHOCR)

HSP 1 Score: 313 bits (802), Expect = 3.620e-102
Identity = 150/218 (68.81%), Postives = 177/218 (81.19%), Query Frame = 0
Query:  257 MFAFVSGFAGVPATRASAFTGASFAARHAPVRTARFSMAASKSVPFLPQPDKLDGSMPGDVGFDPFGFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSASNPLYAVSKVGWLPIVQILLFIAVCEAATGWKKVYEDKCEDPGNYGFDPLNLAGTPEKKRRQQTAEIKNGRLAMVAIGGAIHHCLLTNMGLVEQIQSGKWFGGYYVH 474
            M AFVSGFAG    R++AF+G S + R APV  A  SM+ SKS+P++ +P KLDGS+PGDVGFDP G S+MF+L+FLREAEVKHGRICMLAIVGWVFPE VYHLPN  YS +NPLYAV  VG+LP +QILLF+AVCEAA  +KKVYE  CE+PG++G DPL  + TPE+K   Q AEIKNGRLAM+AIGGAIHH LLTN+GL EQIQSG + GGYY+H
Sbjct:    1 MIAFVSGFAGASVARSNAFSGTSVSTRSAPV-VANVSMSMSKSIPYMERPAKLDGSLPGDVGFDPLGISNMFELDFLREAEVKHGRICMLAIVGWVFPEMVYHLPNAAYSVTNPLYAVPSVGFLPCIQILLFMAVCEAAA-YKKVYEQNCENPGDFGIDPLGFSKTPERKAHYQLAEIKNGRLAMIAIGGAIHHALLTNVGLWEQIQSGMYTGGYYIH 216          
BLAST of Ggra10284.t1 vs. uniprot
Match: Q7XY92 (Light-harvest protein (Fragment) n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY92_GRIJA)

HSP 1 Score: 300 bits (768), Expect = 3.460e-97
Identity = 143/202 (70.79%), Postives = 164/202 (81.19%), Query Frame = 0
Query:  273 SAFTGASFAARHAPVRTARFSMAASKSVPFLPQPDKLDGSMPGDVGFDPFGFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSASNPLYAVSKVGWLPIVQILLFIAVCEAATGWKKVYEDKCEDPGNYGFDPLNLAGTPEKKRRQQTAEIKNGRLAMVAIGGAIHHCLLTNMGLVEQIQSGKWFGGYYVH 474
            +AF GA+ +   AP + ARFSM AS SVPFL +P KLDGS+PGDVGFDP GFS+ F+LNFLREAE+KHGRICMLAI+GWVFPE V HLPNE YSA+NPLYAV  VGWLPI+QIL FIA+CEA  G  KVY++ C +PGNYGFDP  L   P+ K+  + AEIKNGRLAM AIGGAIHH LL N+GLVEQI SGKWFGGYY+H
Sbjct:    7 TAFAGAAVSRAAAPAK-ARFSMDASASVPFLERPPKLDGSLPGDVGFDPCGFSNAFELNFLREAELKHGRICMLAILGWVFPELVGHLPNEAYSATNPLYAVGSVGWLPIIQILAFIAICEA-KGVAKVYDENCANPGNYGFDPFGLTANPKTKQHYELAEIKNGRLAMCAIGGAIHHALLRNVGLVEQITSGKWFGGYYLH 206          
BLAST of Ggra10284.t1 vs. uniprot
Match: A0A2V3IES2 (tRNA (Guanine-N(7)-)-methyltransferase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IES2_9FLOR)

HSP 1 Score: 299 bits (765), Expect = 6.640e-96
Identity = 154/244 (63.11%), Postives = 184/244 (75.41%), Query Frame = 0
Query:   33 MHRATASQLIQPPPQAV--ATQSGQVRVRQHLNPLARRWSQPVNLPQDWYATAFEDTSLPLVVDVGVAKGRFLLKMAQNQRRCNFLGIEIREPLVHQANRCAEQLGLRNLFYLAGNANVSLLDILSACPDGVLQQLLIQFCDPWFKKRHAKRRMVNTALVQDIYHILQKSRNSTVSSASRVLTEPRVFIQSDVLEVATEMTQRFDQHGRFLRLQNEDDLQVDRHGCMFAFVSGFAGVPATRASA 274
            M R TA+QLIQPPPQ    + ++GQVRVRQHLNPLARRW QP+ LPQDWY+TAFE  +LPLVVDVGVAKGRFLLK+A+  +  NFLGIEIREPLVHQANR A   GL NL YLAGNANVSLL IL+  P GVL+ + IQFCDPWFKKRHAKRRMVN  LV+D++++L KSR   V     V  EPR+F+QSDV EVA EMTQ FD HG F R+++E +L +D +G +   +    G+P  R +A
Sbjct:    1 MSRPTAAQLIQPPPQTGKGSLEAGQVRVRQHLNPLARRWRQPIQLPQDWYSTAFEKPALPLVVDVGVAKGRFLLKLAKQDKTRNFLGIEIREPLVHQANRTAADAGLTNLIYLAGNANVSLLRILNDAPLGVLRDVYIQFCDPWFKKRHAKRRMVNNQLVRDVHNVLAKSRQQMVQRNGSVPVEPRLFVQSDVFEVAVEMTQLFDHHGGFSRVRSEGNLAIDENGWL---LGNPIGIPTERETA 241          
BLAST of Ggra10284.t1 vs. uniprot
Match: R7QPP6 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPP6_CHOCR)

HSP 1 Score: 245 bits (625), Expect = 7.640e-75
Identity = 132/237 (55.70%), Postives = 164/237 (69.20%), Query Frame = 0
Query:   37 TASQLIQPPPQAV--ATQSGQVRVRQHLNPLARRWSQPVNLPQDWYATAFEDTSLPLVVDVGVAKGRFLLKMAQNQRRCNFLGIEIREPLVHQANRCAEQLGLRNLFYLAGNANVSLLDILSACPDGVLQQLLIQFCDPWFKKRHAKRRMVNTALVQDIYHILQKSRNSTVSSASRVLTEPRVFIQSDVLEVATEMTQRFDQHGRFLRLQNEDDLQVDRHGCMFAFVSGFAGVPATR 271
            T +Q IQPPP     + ++G VRVRQH+NPLARRWSQP+ LP +WY+ AF+D SLPLVVDVGVAKGRFL K+A +    NFLG+EIREPLVHQANR A   G  NLFYLA NANVSL  +L+  P G L+++ +QFCDPWFKKRHAKRR+VN  LV++I+  L+ +      +A     + +VFIQSDV+EVA EM   FD HG F RL + + L+ D  G +   V    GVP  R
Sbjct:    9 TLAQQIQPPPATGQGSVENGTVRVRQHVNPLARRWSQPLQLPHEWYSQAFQDPSLPLVVDVGVAKGRFLAKLAASDASRNFLGLEIREPLVHQANRAAASAGRGNLFYLACNANVSLAAVLADAPIGALREVYVQFCDPWFKKRHAKRRIVNPPLVEEIFKALKHA------AAGGESYKRKVFIQSDVIEVAIEMRSFFDGHGGFQRLGDSNGLECDMEGWL---VENPIGVPTER 236          
BLAST of Ggra10284.t1 vs. uniprot
Match: A0A1X6NK41 (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A1X6NK41_PORUM)

HSP 1 Score: 198 bits (503), Expect = 3.360e-57
Identity = 105/210 (50.00%), Postives = 133/210 (63.33%), Query Frame = 0
Query:  267 VPATRASAFTGASFAARHAPVRTARFSMA----ASKSVPFLPQPDKLDGSMPGDVGFDPFGFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSASNPLYAVSKVGWLPIVQILLFIAVCEAATGWKKVYEDKCEDPGNYGFDPLNLAGTPEKKRRQQTAEIKNGRLAMVAIGGAIHHCLLTNMGLVEQIQSGKWFGGYY 472
            V A+  S+F GA F    AP   A         ASKSVPF  +P  LD S  GDVGFDP GFS+ FDL +L EAE+KH RI ML  +G +FPE  YHLPN  YS +NPL AV  VG+ P+ QILLF+ V EA + ++K+  +     G++GFDPL LA     ++R   +E+KNGRLAM+A GG IHH L+T+ G + QIQ G + GG Y
Sbjct:   16 VAASATSSFAGARFVRAAAPTAAATIDTTIRAEASKSVPFWERPASLDKSYAGDVGFDPLGFSNAFDLKWLVEAELKHCRIAMLGALGMIFPE-FYHLPNAAYSQTNPLAAVPSVGFAPVAQILLFMVVLEAIS-YQKINYNPSAPAGDFGFDPLGLAKNESARKRFALSEVKNGRLAMIACGGMIHHALITHQGPITQIQQGHFIGGDY 223          
BLAST of Ggra10284.t1 vs. uniprot
Match: A0A7S2ZNU9 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZNU9_9RHOD)

HSP 1 Score: 195 bits (496), Expect = 2.220e-56
Identity = 109/207 (52.66%), Postives = 136/207 (65.70%), Query Frame = 0
Query:  259 AFVSGFAGVPATRASAFTGASFAARHAPVRTARFSMAASKSVPFLPQPDKLDGSMPGDVGFDPFGFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSASNPLYAVSKVGWLPIVQILLFIAVCEAATGWKKVYEDKCEDPGNYGFDPLNLAGTPEKKRRQQTAEIKNGRLAMVAIGGAIHHCLLTNMGLVEQIQSG 465
            AFVSG   V  T++S F G+   AR  P   A  +M  S SVPFL     LD S P    FDP GFS M+DL FL+EAE+KHGRICMLA++GWVFPE V HLP +++S +NPL A ++V    ++QILLFI  CEA + + K+Y  +  +PG YGFDPLNL    +     + AEIKNGRLAM+AIGG IH  LLT  G+  QI+SG
Sbjct:    2 AFVSG---VTVTKSS-FHGSRVCAR-VPKSAATITMKGSASVPFLDSVKTLDPSAPAFADFDPLGFSSMYDLKFLQEAEIKHGRICMLAVLGWVFPEFV-HLPADVFSNTNPLAAFNQVPKAGLLQILLFILACEAIS-FDKIYYTENWEPGVYGFDPLNLGKNDKSLAWYKAAEIKNGRLAMIAIGGFIHQALLTKQGVFAQIKSG 201          
BLAST of Ggra10284.t1 vs. uniprot
Match: Q9FEM0 (Light-harvesting protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q9FEM0_GALSU)

HSP 1 Score: 189 bits (480), Expect = 6.620e-54
Identity = 90/168 (53.57%), Postives = 125/168 (74.40%), Query Frame = 0
Query:  297 SKSVPFLPQPDKLDGSMPGDVGFDPFGFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSASNPLYAVSKVGWLPIVQILLFIAVCEAATGWKKVYEDKCEDPGNYGFDPLNLAGTPEKKRRQQTAEIKNGRLAMVAIGGAIHHCLLTNMGLVEQIQS 464
            SK++PF P+P++LD SMPG  GFDP GFSD FD+ FL+EAE+KH RICMLA +GWVFPE  +HLP+E++S ++PL A+ +V    ++QILL +   EA +  K  +  + ++PG++GFDPL L G  + K+  QTAEIKNGRLAM+A+G   H  LLTN G++EQ++S
Sbjct:   44 SKAIPFFPKPERLDESMPGYAGFDPLGFSDKFDVKFLQEAEIKHCRICMLAALGWVFPE-FWHLPSEVFSNTSPLAALGQVPKFGLIQILLLVVALEAISLDKLEFHPE-KEPGDFGFDPLGL-GKGKSKKWMQTAEIKNGRLAMIAMGAFFHQNLLTNQGVIEQLKS 208          
BLAST of Ggra10284.t1 vs. uniprot
Match: L1ID46 (Light-harvesting Chl a protein 3 n=4 Tax=Geminigeraceae TaxID=589343 RepID=L1ID46_GUITC)

HSP 1 Score: 180 bits (457), Expect = 1.590e-50
Identity = 98/207 (47.34%), Postives = 127/207 (61.35%), Query Frame = 0
Query:  265 AGVPATRASAFTGASFAARHAPVRTARFSMAASKSVPFLPQPDKLDGSMPGDVGFDPFGFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSASNPL---YAVSKVGWLPIVQILLFIAVCEAATGWKKVYEDKCEDPGNYGFDPLNLAGTPEKKRRQQTAEIKNGRLAMVAIGGAIHHCLLTNMGLVEQIQSGKWF 468
            AGV A  A A    +  +R A  R  R     S+++PFL +P KLD SMPG  GFDP GFSD +D+ +L+EAE+KHGRICMLA+VG   PE +  LP     ++NPL   Y +S  GWL   QI +FI +CE+ +  K  Y DK   PG+ GFDPL L   P  ++    AE+KNGRLAM+  GG +HH LLT MG  +QI   K++
Sbjct:   11 AGVSAAFAPAALPVNAGSRAAIARGPRMQQM-SEAIPFLEKPKKLDSSMPGYAGFDPLGFSDYYDVKWLQEAEIKHGRICMLAVVGMFHPE-IAKLPQFASFSTNPLEAFYQLSFAGWL---QIFVFIGICESFSFEKVYYTDKA--PGDLGFDPLRLGSNPASRKYYANAEVKNGRLAMIGFGGMLHHALLTKMGPFQQIAEQKFY 210          
BLAST of Ggra10284.t1 vs. uniprot
Match: Q8RW55 (Light-harvesting protein n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q8RW55_GALSU)

HSP 1 Score: 175 bits (444), Expect = 1.380e-48
Identity = 88/175 (50.29%), Postives = 118/175 (67.43%), Query Frame = 0
Query:  297 SKSVPFLPQPDKLDGSMPGDVGFDPFGFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEIYSASNPLYAVSK-VGWLPIVQILLFIAVCE--AATGWKKVYEDKCEDPGNYGFDPLNLAGTPEKKRRQQTAEIKNGRLAMVAIGGAIHHCLLTNMGLVEQIQSGKWF 468
            SK++PFL +P  LDGSM GDVGFDP   S   DL +LRE+E+KH RI MLA+VGW F + V+HLPN IYSAS+P  A  K +   P+ QI+L+ +  E  +     ++ +    +PG +GFDPL L   P+  +R Q +E+KNGRLAM+AIGG IH   LT+MG ++Q+Q  KWF
Sbjct:   46 SKAIPFLDRPPALDGSMVGDVGFDPLNISSYLDLRWLRESELKHCRIAMLAVVGW-FVQEVFHLPNXIYSASDPTEAFWKTLATGPMGQIVLWTSFFEIISTPAVIQMLQGSGREPGYFGFDPLGLGKNPQLYKRFQLSELKNGRLAMIAIGGLIHQSFLTHMGAIQQLQQHKWF 219          
The following BLAST results are available for this feature:
BLAST of Ggra10284.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IEU13.910e-14087.61Chlorophyll a-b binding protein, chloroplastic n=1... [more]
R7QMN63.620e-10268.81Light-harvest protein n=1 Tax=Chondrus crispus Tax... [more]
Q7XY923.460e-9770.79Light-harvest protein (Fragment) n=1 Tax=Griffiths... [more]
A0A2V3IES26.640e-9663.11tRNA (Guanine-N(7)-)-methyltransferase n=1 Tax=Gra... [more]
R7QPP67.640e-7555.70Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NK413.360e-5750.00Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A7S2ZNU92.220e-5652.66Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
Q9FEM06.620e-5453.57Light-harvesting protein n=1 Tax=Galdieria sulphur... [more]
L1ID461.590e-5047.34Light-harvesting Chl a protein 3 n=4 Tax=Geminiger... [more]
Q8RW551.380e-4850.29Light-harvesting protein n=2 Tax=Galdieria sulphur... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 294..466
e-value: 7.5E-45
score: 155.2
NoneNo IPR availableGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 55..262
e-value: 1.6E-42
score: 147.1
NoneNo IPR availablePANTHERPTHR23417:SF21TRNA (GUANINE-N(7)-)-METHYLTRANSFERASEcoord: 51..249
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 294..463
IPR003358tRNA (guanine-N-7) methyltransferase, Trmb typeTIGRFAMTIGR00091TIGR00091coord: 80..250
e-value: 6.7E-34
score: 114.9
IPR003358tRNA (guanine-N-7) methyltransferase, Trmb typePFAMPF02390Methyltransf_4coord: 90..250
e-value: 3.8E-32
score: 111.1
IPR003358tRNA (guanine-N-7) methyltransferase, Trmb typePANTHERPTHR234173-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASEcoord: 51..249
IPR003358tRNA (guanine-N-7) methyltransferase, Trmb typePROSITEPS51625SAM_MT_TRMBcoord: 46..294
score: 42.715767
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 306..450
e-value: 7.7E-41
score: 140.3
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 80..199

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:370877..375461 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10284.t1Ggra10284.t1Gracilaria gracilis GNS1m malemRNAtig00000016_pilon 370877..375461 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10284.t1 ID=Ggra10284.t1|Name=Ggra10284.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=475bp
MLRPLFAPPLRFPAVRSHRPAQLCPNRRGVRQMHRATASQLIQPPPQAVA
TQSGQVRVRQHLNPLARRWSQPVNLPQDWYATAFEDTSLPLVVDVGVAKG
RFLLKMAQNQRRCNFLGIEIREPLVHQANRCAEQLGLRNLFYLAGNANVS
LLDILSACPDGVLQQLLIQFCDPWFKKRHAKRRMVNTALVQDIYHILQKS
RNSTVSSASRVLTEPRVFIQSDVLEVATEMTQRFDQHGRFLRLQNEDDLQ
VDRHGCMFAFVSGFAGVPATRASAFTGASFAARHAPVRTARFSMAASKSV
PFLPQPDKLDGSMPGDVGFDPFGFSDMFDLNFLREAEVKHGRICMLAIVG
WVFPEAVYHLPNEIYSASNPLYAVSKVGWLPIVQILLFIAVCEAATGWKK
VYEDKCEDPGNYGFDPLNLAGTPEKKRRQQTAEIKNGRLAMVAIGGAIHH
CLLTNMGLVEQIQSGKWFGGYYVH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003358tRNA_(Gua-N-7)_MeTrfase_Trmb
IPR022796Chloroa_b-bind
IPR029063SAM-dependent_MTases