Ggra10283.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10283.t1
Unique NameGgra10283.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length88
Homology
BLAST of Ggra10283.t1 vs. uniprot
Match: 60S ribosomal protein L39-2 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929E926 (60S ribosomal protein L39-2 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929E926)

HSP 1 Score: 71.2 bits (173), Expect = 1.530e-14
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 0
Query:   25 PPKVLVRNRPSTMPAHKTFLIKKKLAKKARQNQQAPHWFRMKTDNKIXXXXXXXXXRRTKLGF 87
            PP+    N  + MP+HKTF+IKKKLAKK RQN+  PHW R++TDNKI         RRTKLGF
Sbjct:   13 PPRSPRSNFAAAMPSHKTFVIKKKLAKKMRQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGF 75          
BLAST of Ggra10283.t1 vs. uniprot
Match: A0A444FD77 (Uncharacterized protein n=3 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444FD77_ENSVE)

HSP 1 Score: 70.9 bits (172), Expect = 3.820e-14
Identity = 40/71 (56.34%), Postives = 44/71 (61.97%), Query Frame = 0
Query:   17 SSPPQKNLPPKVLVRNRPSTMPAHKTFLIKKKLAKKARQNQQAPHWFRMKTDNKIXXXXXXXXXRRTKLGF 87
            SSPP    PP  L     + MP+HKTF IKKKLAKK RQN+  PHW RM+TDN I         RRTKLGF
Sbjct:   31 SSPP----PPPQLCSGPTAEMPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 97          
BLAST of Ggra10283.t1 vs. uniprot
Match: A0A022Q037 (Uncharacterized protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022Q037_ERYGU)

HSP 1 Score: 70.1 bits (170), Expect = 5.350e-14
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 0
Query:   13 RHSSSSPPQKNLPPKVLVRNRPSTMPAHKTFLIKKKLAKKARQNQQAPHWFRMKTDNKIXXXXXXXXXRRTKLGF 87
            +HS      +N PP+       STMP+HK+F+IKKKLAKK RQN+  P+W RM+TDN I         RRTKLGF
Sbjct:   16 QHSLPRSRSRNQPPE-------STMPSHKSFMIKKKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 83          
BLAST of Ggra10283.t1 vs. uniprot
Match: A0A2P5ANB0 (Ribosomal protein n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5ANB0_PARAD)

HSP 1 Score: 69.7 bits (169), Expect = 5.580e-14
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 0
Query:   32 NRPSTMPAHKTFLIKKKLAKKARQNQQAPHWFRMKTDNKIXXXXXXXXXRRTKLGF 87
            +RP+ MP+HKTF IKKKLAKK RQN+  PHW R++TDN I         RRTKLGF
Sbjct:   16 DRPAKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71          
BLAST of Ggra10283.t1 vs. uniprot
Match: A0A166B2T5 (Uncharacterized protein n=11 Tax=Pentapetalae TaxID=1437201 RepID=A0A166B2T5_DAUCS)

HSP 1 Score: 68.2 bits (165), Expect = 1.390e-13
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 0
Query:   37 MPAHKTFLIKKKLAKKARQNQQAPHWFRMKTDNKIXXXXXXXXXRRTKLGF 87
            MP+HKTF+IKKKLAKK RQN+  PHW RM+TDN I         RRTKLGF
Sbjct:    1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of Ggra10283.t1 vs. uniprot
Match: A0A7J7LME2 (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7LME2_9MAGN)

HSP 1 Score: 68.9 bits (167), Expect = 1.450e-13
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 0
Query:   35 STMPAHKTFLIKKKLAKKARQNQQAPHWFRMKTDNKIXXXXXXXXXRRTKLGF 87
            S MP+HKTF+IKKKLAKK RQN+  P+W RM+TDNKI         RRTKLGF
Sbjct:   29 SKMPSHKTFIIKKKLAKKQRQNRPIPNWIRMRTDNKIRYNAKRRHWRRTKLGF 81          
BLAST of Ggra10283.t1 vs. uniprot
Match: F6HCK9 (Uncharacterized protein n=3 Tax=Mesangiospermae TaxID=1437183 RepID=F6HCK9_VITVI)

HSP 1 Score: 68.2 bits (165), Expect = 1.720e-13
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 0
Query:   37 MPAHKTFLIKKKLAKKARQNQQAPHWFRMKTDNKIXXXXXXXXXRRTKLGF 87
            MP+HKTF+IKKKLAKK RQN+  PHW RM+TDN I         RRTKLGF
Sbjct:   10 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 60          
BLAST of Ggra10283.t1 vs. uniprot
Match: A0A059D7Q1 (Uncharacterized protein n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059D7Q1_EUCGR)

HSP 1 Score: 68.9 bits (167), Expect = 1.970e-13
Identity = 39/72 (54.17%), Postives = 45/72 (62.50%), Query Frame = 0
Query:   16 SSSPPQKNLPPKVLVRNRPSTMPAHKTFLIKKKLAKKARQNQQAPHWFRMKTDNKIXXXXXXXXXRRTKLGF 87
            S +P Q   P    VR+  + MP+HKTF IKKKLAKK RQN+  PHW RM+TDN I         RRTKLGF
Sbjct:   25 SGTPSQLGSP---RVRSPSAKMPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 93          
BLAST of Ggra10283.t1 vs. uniprot
Match: B9SC04 (Ribosomal protein L39e, putative n=1 Tax=Ricinus communis TaxID=3988 RepID=B9SC04_RICCO)

HSP 1 Score: 68.2 bits (165), Expect = 2.050e-13
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 0
Query:   37 MPAHKTFLIKKKLAKKARQNQQAPHWFRMKTDNKIXXXXXXXXXRRTKLGF 87
            MP+HKTF+IKKKLAKK RQN+  PHW RM+TDN I         RRTKLGF
Sbjct:   17 MPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 67          
BLAST of Ggra10283.t1 vs. uniprot
Match: A0A068U1E6 (Uncharacterized protein n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068U1E6_COFCA)

HSP 1 Score: 68.6 bits (166), Expect = 2.110e-13
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0
Query:   21 QKNLPPKVLVRNRPSTMPAHKTFLIKKKLAKKARQNQQAPHWFRMKTDNKIXXXXXXXXXRRTKLGF 87
            Q  LPP +    +   MP+HKTF+IKKKLAKK RQN+  P+W RM+TDN I         RRTKLGF
Sbjct:   16 QPILPPVLSFNLQQPKMPSHKTFMIKKKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 82          
The following BLAST results are available for this feature:
BLAST of Ggra10283.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
60S ribosomal protein L39-2 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929E9261.530e-1457.1460S ribosomal protein L39-2 n=1 Tax=Dioscorea caye... [more]
A0A444FD773.820e-1456.34Uncharacterized protein n=3 Tax=Ensete ventricosum... [more]
A0A022Q0375.350e-1450.67Uncharacterized protein n=1 Tax=Erythranthe guttat... [more]
A0A2P5ANB05.580e-1460.71Ribosomal protein n=2 Tax=Cannabaceae TaxID=3481 R... [more]
A0A166B2T51.390e-1364.71Uncharacterized protein n=11 Tax=Pentapetalae TaxI... [more]
A0A7J7LME21.450e-1364.15Uncharacterized protein n=1 Tax=Kingdonia uniflora... [more]
F6HCK91.720e-1364.71Uncharacterized protein n=3 Tax=Mesangiospermae Ta... [more]
A0A059D7Q11.970e-1354.17Uncharacterized protein n=1 Tax=Eucalyptus grandis... [more]
B9SC042.050e-1364.71Ribosomal protein L39e, putative n=1 Tax=Ricinus c... [more]
A0A068U1E62.110e-1353.73Uncharacterized protein n=1 Tax=Coffea canephora T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023626Ribosomal protein L39e domain superfamilyGENE3D1.10.1620.10Ribosomal protein L39ecoord: 37..87
e-value: 6.5E-26
score: 92.1
IPR023626Ribosomal protein L39e domain superfamilySUPERFAMILY48662Ribosomal protein L39ecoord: 39..86
IPR000077Ribosomal protein L39ePFAMPF00832Ribosomal_L39coord: 45..85
e-value: 6.4E-20
score: 70.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availablePANTHERPTHR19970:SF2360S RIBOSOMAL PROTEIN L39coord: 21..87
NoneNo IPR availablePANTHERPTHR19970RIBOSOMAL PROTEIN L39Ecoord: 21..87
IPR020083Ribosomal protein L39e, conserved sitePROSITEPS00051RIBOSOMAL_L39Ecoord: 66..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:370244..370613 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10283.t1Ggra10283.t1Gracilaria gracilis GNS1m malemRNAtig00000016_pilon 370244..370613 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10283.t1 ID=Ggra10283.t1|Name=Ggra10283.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=88bp
MIATDSSGHNVYRHSSSSPPQKNLPPKVLVRNRPSTMPAHKTFLIKKKLA
KKARQNQQAPHWFRMKTDNKIRYNNKRRHWRRTKLGF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023626Ribosomal_L39e_dom_sf
IPR000077Ribosomal_L39
IPR020083Ribosomal_L39_CS