Ggra10265.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10265.t1
Unique NameGgra10265.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length1032
Homology
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BLAST of Ggra10265.t1 vs. uniprot
Match: A0A1Q9CMK8 (UBA domain-containing protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9CMK8_SYMMI)

HSP 1 Score: 120 bits (301), Expect = 2.390e-24
Identity = 73/225 (32.44%), Postives = 108/225 (48.00%), Query Frame = 0 
Query:  729 CPRLGIFPFDTGCPANCASHRIGLDNVTFYKTSSAFVFGNLQSFRQQRTPN--------ESFHGGTRVAQSFLAREKAVVDSVMARVKEANLPPLSVHRQSYMHMSVDYLCCLTEQERTIAQNVRAQWVAQHFN-NFPLELGRVQCFQERKDSITLIWIADGLAQQLLVRANDALANAMRSKGVPVLVERSLQMPFHATLVAFRVSAGQDISRYRKVIHAGVEAS 944
            C R    PF  GCP +CA  R       FYKTS  +  G L+                 + F        +F   E+++ +      +   L PLS+ +Q  +HMS+ YLCCLT  E      V  +W+ Q  + +F     RV+C+QER DSIT I +A+   Q+ +++   +L  ++   GVP  V+R  QMPFH TL+    +AG DIS Y   +   V+A+
Sbjct:   50 CRRTRFMPFLAGCPKSCADLRPDKPTDRFYKTSVIWRLGRLKEIHNATAAAALTDTAMAQRFTADPAYIHAFAGSEQSLTEQQAQETQALGLEPLSLSQQRNVHMSLAYLCCLTSAEMATVNEVVGRWLQQQMHLDFQAVFDRVECWQERVDSITNIIVANEATQRTVMKLYQSLLRSIEDAGVPQPVQRDDQMPFHMTLLGLH-TAGSDISAYLAPVARAVDAA 273
The following BLAST results are available for this feature:
BLAST of Ggra10265.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1Q9CMK82.390e-2432.44UBA domain-containing protein n=2 Tax=Symbiodinium... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 466..493
NoneNo IPR availableCOILSCoilCoilcoord: 187..221
NoneNo IPR availableCOILSCoilCoilcoord: 138..165
NoneNo IPR availableGENE3D3.90.1140.10Cyclic phosphodiesterasecoord: 789..954
e-value: 4.2E-5
score: 25.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 372..386
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 370..463
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 319..356
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 388..411
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 319..333
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 412..442
IPR016158Cullin homology domainPROSITEPS50069CULLIN_2coord: 464..645
score: 8.914948

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:287856..293667 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10265.t1Ggra10265.t1Gracilaria gracilis GNS1m malemRNAtig00000016_pilon 287856..293667 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10265.t1 ID=Ggra10265.t1|Name=Ggra10265.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=1032bp
MAFVKPSVVTLTAFFERESRQGNLGETGRSSERELFNPSTVEGAASDSPA
ALNPDSAGLQAIVLDVWDDLLRLVRDCQSNGIHEAFLTVGDNLKKTKLTN
VAEEVYRRELVAVLETVSSRAKKNREEGCVASEEQAVFNSLKRQISEVAE
EAKRAREALHIANKEKCEVEYECVEHEEKRRTLFWLLKDARAENRELRAS
NSTLMDTSSKLEADVERLQVEKSNDDVEKLRALHKAEMAELVATQTSLHC
KRLDEQLKNVESTSSLVHKHVEELEKALEETTTFLAHTVNNSETPRSHWL
EGQVESLVRKSTKLLGRFKASLSHDRNEEDRSEGSNEEENEGDVNQAGII
NREDPTVLLNGRRGSLGLLFNKNHRQRDQSQPGLLRRLTNRLRRDRSGQD
VETEARDIRDAQVNSTRSNGRNELGASSDNDCNPQPSRSANAETAGVKKI
RGGRRGQLQDSDPQAVEYISKTLETLEKNLETLQDVYEFKDEEVYRLNLE
LRDAIKLSDAFEQGMKSEFHKRLEIEKTLDATRGKSVAEKSGALKGSADE
IGDREKSVGDKVTKPTVCMYISQIPSKVEEKKHVHDFSTPVDGRALRALM
AVILVLGQPYRSRTMLRGVRLRVSSPGNWPTKEVNPSPLHVSLPKLKLLT
EIQPTSNAFVRAAPKAHKSLSPTTIPMNPVLPEYQPVPIEPQEPVQQRDP
YRVSANIGRNRFDPFLTSSIASQASQCGCPRLGIFPFDTGCPANCASHRI
GLDNVTFYKTSSAFVFGNLQSFRQQRTPNESFHGGTRVAQSFLAREKAVV
DSVMARVKEANLPPLSVHRQSYMHMSVDYLCCLTEQERTIAQNVRAQWVA
QHFNNFPLELGRVQCFQERKDSITLIWIADGLAQQLLVRANDALANAMRS
KGVPVLVERSLQMPFHATLVAFRVSAGQDISRYRKVIHAGVEASGFDSLK
THVSLDMELGAWEFSWNSSEMNYPTFLNVENAKWILGDLRLRHLLKNRRI
KLDTSLSKFRLGCREQSQLSHQSIPQMRQNA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016158Cullin_homology