Ggra10235.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10235.t1
Unique NameGgra10235.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length464
Homology
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BLAST of Ggra10235.t1 vs. uniprot
Match: A0A2V3IFW9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFW9_9FLOR)

HSP 1 Score: 546 bits (1406), Expect = 8.540e-190
Identity = 283/479 (59.08%), Postives = 353/479 (73.70%), Query Frame = 0 
Query:    5 TFFLSVLTAALLLGYFPAIAVQLDTTNRDSS--CQTIRKSMKEAYYSQVDMLRRGLPRRVVQSEYVYAANYYAAYSSYFRNNDLNSTCVWTNLWYGLFDYQDRAKWALDYLNKMRLWKPEINFLNFTQYPSLPDLSSSEITHIDALWHNIDHRLKSTPRGGYVFEDFVFPNNVDVLYDPGKDLACDEYYKFGPLNSNNSLPATKVFTVLGMASIKLFRDHGKKSSIEQMLKHFAGYAFDGVRCTGTEREVLKIPSSLLGSYSRNLGFIFASCSKNP------LASFSVEAFESVFADELSSLTSYNSWGHIEYAKLVGRYSIPAIVNSVDTILDSHNFNALT-SYGSS-----------SXXXXXXXXXXXXDHEMEADDRFLVAARQGSCSSGYVWLTRENPVSNSLEHCCAAVCDIFALLSTTVDPYPHEECCYRCNEDHGCPSGLTEADVFDNDNTFIIVPEYGEQSQQTVTMVDI 463
            T  + +LTA +  G+       L+TT R SS  CQT+ +SM+EA+Y+QVD++RRGLP RVVQSEYVYAAN+ A Y SYF+  +LN+TCV++ LWY LFDY +RA WAL YL  MR WKPEINFLNFTQY SLP ++ +E   +D LWH ID +L STPRG Y ++D  FPNNV VLYDPG++LAC EY KFG +  +++ PAT V+  L M SI++++    + +I+QML HFA YAFDGVRCTG E+  LKIP  L  +YSRN+G+I++S           L  F+ +AF+S+FADE+ SLTSYNSWG+ EYAKLVGR SIPAIV+S+DT+LD+ NF+ L  S GSS           S  XXXXXXXXXX  E++  D F+V  R  +CS+GY WL+RE  V + LEHCCA VCD FA+L T+VDP+PHEECCYRCNE HGCPSGLTE D+FDNDN+FIIVPEYG+QSQQTVTMVDI
Sbjct:   10 TLVVLLLTARISYGF------DLETTTRSSSGSCQTLYESMREAFYAQVDLIRRGLPVRVVQSEYVYAANFLAHYDSYFQYRNLNTTCVYSYLWYHLFDYSNRAHWALKYLQSMRGWKPEINFLNFTQYESLPPMAQTEQDVVDGLWHTIDLKLLSTPRGQYGYDDLPFPNNVGVLYDPGQELACSEYNKFGSVTGDHARPATDVYIHLAMCSIQMYQAGANRDAIKQMLSHFAAYAFDGVRCTGDEQADLKIPEILFQNYSRNIGYIYSSIPNKTTGDPVNLPQFTKDAFQSIFADEIQSLTSYNSWGYPEYAKLVGRNSIPAIVDSIDTLLDNQNFDTLMQSPGSSWSGTPMNTASGSTSXXXXXXXXXXXXELDEVDDFIVLDRTATCSNGYTWLSREIQVQDDLEHCCATVCDTFAMLITSVDPFPHEECCYRCNESHGCPSGLTEQDIFDNDNSFIIVPEYGDQSQQTVTMVDI 482
The following BLAST results are available for this feature:
BLAST of Ggra10235.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IFW98.540e-19059.08Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..463
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availableTMHMMTMhelixcoord: 3..25

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:173043..174434 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10235.t1Ggra10235.t1Gracilaria gracilis GNS1m malemRNAtig00000016_pilon 173043..174434 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10235.t1 ID=Ggra10235.t1|Name=Ggra10235.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=464bp
MKWLTFFLSVLTAALLLGYFPAIAVQLDTTNRDSSCQTIRKSMKEAYYSQ
VDMLRRGLPRRVVQSEYVYAANYYAAYSSYFRNNDLNSTCVWTNLWYGLF
DYQDRAKWALDYLNKMRLWKPEINFLNFTQYPSLPDLSSSEITHIDALWH
NIDHRLKSTPRGGYVFEDFVFPNNVDVLYDPGKDLACDEYYKFGPLNSNN
SLPATKVFTVLGMASIKLFRDHGKKSSIEQMLKHFAGYAFDGVRCTGTER
EVLKIPSSLLGSYSRNLGFIFASCSKNPLASFSVEAFESVFADELSSLTS
YNSWGHIEYAKLVGRYSIPAIVNSVDTILDSHNFNALTSYGSSSSSGSDS
GSSSDDDHEMEADDRFLVAARQGSCSSGYVWLTRENPVSNSLEHCCAAVC
DIFALLSTTVDPYPHEECCYRCNEDHGCPSGLTEADVFDNDNTFIIVPEY
GEQSQQTVTMVDI*
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