Ggra1015.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1015.t1
Unique NameGgra1015.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length489
Homology
BLAST of Ggra1015.t1 vs. uniprot
Match: A0A2V3IIJ0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIJ0_9FLOR)

HSP 1 Score: 292 bits (748), Expect = 7.360e-90
Identity = 194/491 (39.51%), Postives = 267/491 (54.38%), Query Frame = 0
Query:    2 REFTLFVEPDVLNVVKFFSLTFLVTPILETLLESLITSRLTLSVRTGRQYELFESRLGIFALHSKYAGSRKNRLWLVLCAIFVLMTELWLEFSFSSIQIDDSQRTGVWIGPTHSKRYRAAPNASINDEPTRFLEPVSRSCVDGRRIMERSAAVNA-----DYSNVIAQYSLTDNFTIRTPYMVVRDSLVACDINKVVKSASFITPNIISVQGIEGFESRCHQLVRHSNFWFKLLRNESFRLQTTFSFEGTSLQAFVAEQTVCVELGNDARIPRQ----------VCALSDGSRIAIGIAHKMESLLCIQLLLSG---EAVSGLHDKSRRVRLLAYVAEKRLFNPAASKEVEYLIQKTALVQVAMVAIAVANEEGVVGLDEARSVRQIALP--QSRQVTTISALGLVPVSILLGTALLLAVWDVIVRRKIAKVVRGMGGVRKSQMRVDLSKQWVRERVGEDLKRLGADWSGRKDVEVRLVTEGGRLRLRVLP 472
            ++  L + P V NV+K+   T ++TP  E +  SL+ S  T  V+ G Q ELF+S+LGIFALHS+YAG R+ RLWLVL    ++  ELWLE SFS+ ++  +    VW+GP H +RY    N SINDEPTR LE +SR C+ G R M+R +   A     + + VIAQYSLT N+T+R  Y+   DSLVACD     K AS   PNI+S  G+EGF S C   +   + WF+ L NESF  +  F FEG   +A+   +  CVEL  DA + R           VCAL   S +AI +   +    C+ LLL G   E ++G H  +R++RLLA+VAE R+  P  S  ++ ++QK +L +VAM A+ V+ E  V G+ E R  R++     Q RQV                    LAV DV++R +           R++  RV +S  WV   V  D +RLG    G   V +RL  +    R+RVLP
Sbjct:    3 KQLLLNLSPSVWNVLKWALFTLVITPAFEIMTASLMASSATARVQAGAQLELFDSQLGIFALHSRYAGKRRTRLWLVLGTAVLMALELWLEMSFSAAEVVVTVSEEVWVGPNHDERYMRRENFSINDEPTRLLETMSRQCIAGPRAMKRDSVQRATVTVLEEAEVIAQYSLTANWTVRAAYVREEDSLVACDAVAETKWASVEAPNIVSQYGVEGFHSDCDPALGLDSEWFQTLHNESFTQRGAFVFEGERARAYSGTRATCVEL--DAGVDRAEDIDDVPLRLVCALQLNSTVAITLTAGLNIARCVALLLHGPGVETLAGSH--ARQLRLLAFVAETRILWPGWSNTLKGMVQKRSLERVAMAALMVSGERAVSGVAERRERRRVTQSGGQVRQVXXXXXXXXXXXXXXXXXXXXLAVCDVVLRLR-----------RRTTKRVQMSSPWVAAVVAVDAQRLGV--YGDSPVRLRLQLDRAAGRVRVLP 476          
BLAST of Ggra1015.t1 vs. uniprot
Match: A0A2V3ITH0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITH0_9FLOR)

HSP 1 Score: 166 bits (421), Expect = 2.650e-42
Identity = 141/501 (28.14%), Postives = 243/501 (48.50%), Query Frame = 0
Query:    1 MREFTLFVEPDVLNVVKFFSLTFLVTPILETLLESLITSRLTLSVRTGRQYELFESRLGIFALHSKYAGSRKNRLWLVLCAIFVLMTELWLEFSFSSIQIDDSQRTGVWIGPTHSKRYRAAPNASINDEPTRFLE-----PVSRS----CVDGRRIMERSAAVNADYSNVIAQYSLTDNFTIRTPYMVVRDSLVA-CDINKVVKSASFITPNIISV-------QGIE---GFESRCHQLVRHSNFWFKLLRNESFRLQTTFSFEGTSLQAFVAEQTVCVELGNDARIPRQ--VCALSDGSR--IAIGIAHKME---SLLCIQLLLSGEAVSGLHDKS-RRVRLLAYVAEKRLFNPAASKEVEYLIQKTALVQVAMVAIAVANEEGVVGLDEARSVRQIALPQSRQVTTISALGLVPVSILLGTALLLAVWDVIVRRKIAKVVRGMGGVRKSQMRVDLSKQWVRERVGEDLKRLGADWSGRKDVEVRLVTEGGRLRLRVLPE 473
            M E +L V P V N++K+ +L+ ++TP  E LL  L   +    +  GR   L ++RLGIF+LHS + G  +NR  L++   FV+  EL  EFSFSS  +  S+   VW  P H +RY       I+ E   F+      PV  +    CV+G   M R      ++   I +YS+   +T+R PY+   D+    C  + + K ASF  P    V       +G +    FE + +    +++   KL      R +   + + T L  F  + ++C+   + A       +C L   S   +A+G  H+ +   S+  I + +SG A+  L D++ R++R L       L     + E    ++KT L Q+  +A+ VANEEGV G+   ++ R++ L   ++  ++  L ++P +++ G  LL    +V++   IAK  R  G     Q  V +S Q++R+++  DL  + A  +  +++  +LV +    RL++LP+
Sbjct:    1 MEELSLNVSPSVWNIIKYVTLSLIITPTFEFLLHRLSQQKARWDILRGRTVALSDTRLGIFSLHSTFWGRSRNRYLLLVIGTFVIAIELLFEFSFSSKLVAKSKTEQVWSQPDHQQRYL------ISSEEVHFMREPALLPVEAANIEGCVEGEFNMRRKEKTKDEFQQTIMEYSINGMYTVRRPYLSATDNATLYCSADHIEKKASFFVPFATKVVYDDVEEEGFDYFGAFEDKFYNRSIYADVDMKL------RFKANLTIDDTKLYMFNGKNSICIGSKSLAVFGTAYLLCGLRAQSAFSLAVGSLHEDDERVSISTIVMEMSGPALGPLVDQAGRQIRFLLSNLFLNLVWHRPASEGASKLRKTTLEQIVQIALIVANEEGVAGIRRVKASREV-LDGVQERASVKRLAIIPGALIGGMLLLFISMNVLLAICIAKAQRKTG-----QHSVRISTQFLRKQLRNDLLGMRAAHNEWQEIGYKLVQDADEQRLQLLPQ 483          
BLAST of Ggra1015.t1 vs. uniprot
Match: A0A2V3IUL8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUL8_9FLOR)

HSP 1 Score: 165 bits (417), Expect = 1.080e-41
Identity = 146/497 (29.38%), Postives = 241/497 (48.49%), Query Frame = 0
Query:    1 MREFTLFVEPDVLNVVKFFSLTFLVTPILETLLESLITSRLTLSVRTGRQYELFESRLGIFALHSKYAGSRKNRLWLVLCAIFVLMTELWLEFSFSSIQIDDSQRTGVWIGPTHSKRYRAAPNAS---INDEPTRFLEPVSRSCVDGRRIMERSAAVNAD----YSNVIAQYSLTDNFTIRTPYMVVRDSLVACDINKVVKSASFITPNIISVQGIEGFESRCHQLVRHSNFWFKLLRNESFRLQTTFSFEGTSLQAFVAEQTVCVEL--GNDARIPRQVCALSDGSRIAIGIAHKMESLLCIQLLLSGEAVSGLHDKSRRVRLLAYVAEKRLFNPAASKEVE---YLIQKTALVQVAMVAIAVANEEGVVGLDEARSVRQIALPQSRQVTTISALGLVPVSI----LLGTALLLAVWDVIVRRKIAKVVRGMGGVRKS-------QMRVDLSKQWVRERVGEDLKRLG-ADWSGRKDVEVRLVTEGG-RLRLRVLP 472
            M E  L ++P +LNV+K+  +  ++TP+ E L +SL++++ T  V +G   E   S+LGIF+LH  Y G  +NR  L+     V+ TEL  EFSFSS  +D  +   VW  P+H++RY  A       +  EPT F   V+  C  G R M R  + + D    Y   + ++ L  N+TIR PY    D  V C   +    A+FI P ++  +     E    ++      + K +  ++             +  F+   T   E+  G++       C + D  R  + +    ES++ + +  SG A+ GL ++ R+VRL+  +  + LF      E+     + +K  +  +A   I  ANEEGV GL +A +V +  +  SRQ+ T  A G +P S+    L+G+  LL V  ++VR  IA+    MG  ++        Q R+  +KQ++R ++ EDL+  G  +    +++  RL T GG    LR++P
Sbjct:    1 MTEIQLGIDPSILNVIKYGVVALILTPLFEILADSLVSAKSTYDVLSGHTIEFSHSQLGIFSLHGTYWGRSRNRFMLIALGFAVIATELLFEFSFSSTTVDLEEVRQVWKQPSHAQRYIPAAGRERIELYREPTEFPGAVALRCTRGPRTMLRYRSNHTDGNERYQGGL-EFRLNGNYTIRMPYRARSDDEVLCSATQKTAKATFIVPRVVRTRTASQVEGVSLEVPTSGYKYIKSIVQDN---------PPPVIDLFLYTDTEVGEVRSGDNGTCAGSWCLIRDRDRSFVLVFWTFESIVVV-IKASGNALEGLTERGRQVRLILTIIYENLFTGIGFNELSPSLRVAEKNDMETLARWMIVAANEEGVGGL-KAATVNRTVVGGSRQMAT--ATGYLPASVSGLALIGS--LLMVSCLLVRVMIAR----MGDKQQPFAVRFWRQWRLQTTKQYMRAKMLEDLQHYGFCESVTLQNIGFRLDTHGGPEATLRLIP 477          
The following BLAST results are available for this feature:
BLAST of Ggra1015.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IIJ07.360e-9039.51Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ITH02.650e-4228.14Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IUL81.080e-4129.38Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 34..74
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 406..488
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 383..405
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 96..382
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 75..95
NoneNo IPR availableTMHMMTMhelixcoord: 380..402

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:537024..538490 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1015.t1Ggra1015.t1Gracilaria gracilis GNS1m malemRNAtig00000027_pilon 537024..538490 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1015.t1 ID=Ggra1015.t1|Name=Ggra1015.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=489bp
MREFTLFVEPDVLNVVKFFSLTFLVTPILETLLESLITSRLTLSVRTGRQ
YELFESRLGIFALHSKYAGSRKNRLWLVLCAIFVLMTELWLEFSFSSIQI
DDSQRTGVWIGPTHSKRYRAAPNASINDEPTRFLEPVSRSCVDGRRIMER
SAAVNADYSNVIAQYSLTDNFTIRTPYMVVRDSLVACDINKVVKSASFIT
PNIISVQGIEGFESRCHQLVRHSNFWFKLLRNESFRLQTTFSFEGTSLQA
FVAEQTVCVELGNDARIPRQVCALSDGSRIAIGIAHKMESLLCIQLLLSG
EAVSGLHDKSRRVRLLAYVAEKRLFNPAASKEVEYLIQKTALVQVAMVAI
AVANEEGVVGLDEARSVRQIALPQSRQVTTISALGLVPVSILLGTALLLA
VWDVIVRRKIAKVVRGMGGVRKSQMRVDLSKQWVRERVGEDLKRLGADWS
GRKDVEVRLVTEGGRLRLRVLPERASSDVDDGVGDRTE*
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