Ggra10074.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra10074.t1
Unique Name	Ggra10074.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	378

Homology

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BLAST of Ggra10074.t1 vs. uniprot
Match: A0A1S4B8J0 (uncharacterized protein LOC107805647 n=2 Tax=Nicotiana TaxID=4085 RepID=A0A1S4B8J0_TOBAC)

HSP 1 Score: 59.7 bits (143), Expect = 5.220e-6
Identity = 58/230 (25.22%), Postives = 97/230 (42.17%), Query Frame = 0

Query:  131 KFESNIALLSHSKVDSP---YIDSEATHHFFHSCKALIRYERIDIKNAQAASGA-ARLVGKGHVWIPLNKGTVVAAYRAPAFQSNIRSVGVL-SADLMVVFTSTICPYNGCFIMDPHRNQEIIWETKIYQGLYVMDLSDRDKQVMVVNASKSNQGLALEWHGRTGHLPPNRYQNLAKTFQSVSCFQRSILDSLTCVPCLTGKMKRNPLVARSRSVSTSSPLELIHVDISG 355
            K   ++ L  H KV      Y+DS  + H            +ID  +A+    +  ++VG G   IP N   +   Y       N+ S+  L  +   V F  T     GC I D   + +II   K Y  +Y++D  ++    + +++   +  L   WH R  H   +  + ++K    +   + +I  +  C  C  GK  RN    +   VSTS PL+L+H+D+ G
Sbjct:  457 KESDHLDLQEHHKVSRKGKWYLDSACSSHMIGDKNLFKEVTKIDGGSAKFGDDSRGKIVGTGT--IPFNNCDINEVYLIDGLNYNLLSISQLCDSGYEVKFKRT-----GCSIED--ESGKIILPGKRYGNVYILDGFEKIDGHICLSSMSDDPWL---WHRRLSHASMHLIEKMSKHNLVIDLPKLNISRTHICDACQMGKQTRNSFKNKD-IVSTSKPLQLLHMDLFG 673

The following BLAST results are available for this feature:

BLAST of Ggra10074.t1 vs. uniprot

BLAST of Ggra10074.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A1S4B8J0	5.220e-6	25.22	uncharacterized protein LOC107805647 n=2 Tax=Nicot...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 256..328 e-value: 1.0E-6 score: 28.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..113

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000862_pilon	contig	tig00000862_pilon:445571..446704 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10074.t1	Ggra10074.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000862_pilon 445571..446704 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra10074.t1 ID=Ggra10074.t1|Name=Ggra10074.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=378bp
MVANAEPVVISLRLPRAATMTTAIIVVVVVTTQETVTNANEKSLAITTTD
DPQRDDNRRSSKGRQPYDRHSSGSSRQYGCYHNGKRQSNWNSGFAPSRDG
NGSRNSNPQAYVVQRRGDSPPSPGFNCNMAKFESNIALLSHSKVDSPYID
SEATHHFFHSCKALIRYERIDIKNAQAASGAARLVGKGHVWIPLNKGTVV
AAYRAPAFQSNIRSVGVLSADLMVVFTSTICPYNGCFIMDPHRNQEIIWE
TKIYQGLYVMDLSDRDKQVMVVNASKSNQGLALEWHGRTGHLPPNRYQNL
AKTFQSVSCFQRSILDSLTCVPCLTGKMKRNPLVARSRSVSTSSPLELIH
VDISGKISQSTQWPFWTTIVRSRTSSS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR025724	GAG-pre-integrase_dom