Ggra10066.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10066.t2
Unique NameGgra10066.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length269
Homology
BLAST of Ggra10066.t2 vs. uniprot
Match: A0A2V3IMC1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMC1_9FLOR)

HSP 1 Score: 108 bits (269), Expect = 8.810e-24
Identity = 64/224 (28.57%), Postives = 108/224 (48.21%), Query Frame = 0
Query:   56 CLQVNNSDFYIFPSNHSTPDGTVACGDSYAFRYVNQERVQQSLGGDGIENCSDNGAICVFVRSEGRVLFLS--------EPYRNGSEPNE--FVATQMSFDPAPHLRTFAEKATDSFLHSVSEELEVRRRMIMGSRNTTCRFTSQGSEHTRIPTPLLAVSICVWVMSVVLFFICVPFKRRVFFDMNNPLHWANRARRAVDDEVTAN-FLQCTENSDGHQIYLTE 268
            C  +  +  Y+   N S  DG V C    A+ Y      +           S  G  CVFV  +    + S           R+G+   E  F+ T++ FD +  L  FA +A D+FL  V++  E+RRR+ +GS    C F  +  + T +P  LL   +  W+++++ F +C+  +R+VFFD+ NPLHWA + ++ VD+ V  +  + C    +   +Y++E
Sbjct:  118 CQTLRGNFNYVRVGNVSLSDGQVRCSKKAAYFYDIVSASETKKLPVSTAEVSCKGETCVFVFEQQNSTYFSGALLPDIVAELRSGAVDTEMAFLKTELLFDSSEMLPVFAGRAVDAFLEQVNDPFELRRRVFLGSAKKNCPFVEEVIDGTSVPRQLLYSLLFAWIVALLFFVLCLVLRRKVFFDVGNPLHWAIQVQKRVDEAVKHDPVVTCATEDEALALYVSE 341          
BLAST of Ggra10066.t2 vs. uniprot
Match: A0A2V3IUG0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUG0_9FLOR)

HSP 1 Score: 92.4 bits (228), Expect = 6.240e-18
Identity = 76/252 (30.16%), Postives = 123/252 (48.81%), Query Frame = 0
Query:    3 ITSMLLFVIVEILASSNTFT---TFATESKLQRC---NVTEPLLP---GAYDATGAEIGFFSCLQVNNSDFYIFPSNHSTPD-GTVACGDSYAFRYVNQ--ERVQQSLGGDGIENCSDNGAICVFVRSEGRVLFLSEPYRNGS---EPNEFVA--TQMSFDPAPHLRTFAEKATDSFLHSVSEELEVRRRMIMGSRNTTCRFTSQGSEHTRIPTPLLAVSICVWVMSVVLFFICVPFKRRVFFDMNNPLHWA 237
            + +M+ F+ +E+L S  TFT   T   ESK Q C   N TE  L            E+  +SCL+ N+S+     +   + D G V C   + F+Y N   +  Q S   +  + C++     V +   G  +FLS+P    S   + N+     T ++F+    ++  A K    +   V +EL+VRRR+++ S+   C+F+S   EH+ +P  LL + I +W     LF +    KR VF+D++NP HWA
Sbjct:   76 VVAMITFIALEVLIS--TFTKPHTHHIESK-QNCTQVNRTENFLALNDSDERRMSEEMVLYSCLRTNSSNIINISTGVKSEDTGAVQCNQEWIFQYENDRTDHEQFSERDEVGKQCNEQFCTLVSLDRSGTRMFLSKPVPRASFDSDNNKIDGKWTNLNFNVQIDVKIMATKVLGLYEQGVFDELDVRRRLLVQSKKQECQFSSDRKEHSVLPFWLLGLIISMWGTCAFLFILTRVLKRGVFYDIDNPSHWA 324          
BLAST of Ggra10066.t2 vs. uniprot
Match: A0A2V3J5B4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5B4_9FLOR)

HSP 1 Score: 86.7 bits (213), Expect = 6.730e-16
Identity = 78/290 (26.90%), Postives = 130/290 (44.83%), Query Frame = 0
Query:    1 MAITSMLLFVIVEILASSNTFTTFATESKLQRC--NVTEPL---LPGAYD----ATGAEIGFFSCLQVNNSDFYIFPSNHSTPDGTVACGDSYAFRYVNQERVQQSLGGDG-IENCSD----NGAICVFVRSEGRV-LFLSEPYRNGSE---PNEFVATQMSFDPAP-HLRTFAEKATDSFLHSVSEELEVRRRMIMGSRNTTCRFTSQGSEHTRIPTPLLAVSICVWVMSVVLFFICVPFKRRVFFDMNNPLHWANRA--RRAVDDEVTAN-----FLQCTENSDGHQI 264
            + I + L FV +E++ S+N+ T   TES L  C  +VT+     +  ++D      G +    SC+ V   + ++   N+S     V CG    F YV+ E+        G I +C      N   C  V  + +  L +SE +   S      EF  TQ+        L + A++    +   VS+E EVRRR++     + C F ++  E T I      +++ +W M +  F + +  +R VF+DM+N LHWA +   R+  DD  T       F++    +DG  +
Sbjct:   61 LTILATLTFVGLEVITSANSHTKPVTESTLSPCIRSVTKQNFDNINSSFDDQTVTNGRDNIGISCVNVGGGEVFVKNGNYSLDTLDVQCGAKPIFSYVSAEKEFLPPASPGVITHCEQDEFLNMGTCASVSLQNKTRLLISERFSEESNFEIDAEFRPTQLFMTIGEDQLESIAKQLLTLYTIGVSDEAEVRRRILTDGIRSQCSFDAETHEFTEIKLWAFILTVIIWAMCITFFLVMLFVRRGVFYDMSNALHWAEKTVYRQLEDDTGTEKGQVRMFVELKGKTDGRTL 350          
BLAST of Ggra10066.t2 vs. uniprot
Match: A0A2V3IT05 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT05_9FLOR)

HSP 1 Score: 73.6 bits (179), Expect = 2.880e-11
Identity = 32/114 (28.07%), Postives = 63/114 (55.26%), Query Frame = 0
Query:  138 FVATQMSFDPAPHLRTFAEKATDSFLHSVSEELEVRRRMIMGSRNTTCRFTSQGSEHTRIPTPLLAVSICVWVMSVVLFFICVPFKRRVFFDMNNPLHWANRARRAVDDEVTAN 251
            F+ T + ++ +   R FA +   ++   V++ +E+R+R+ MG     C F  +  + T +P  L+   +  W++S + F   +  +R +F+DM++PLHWA R  R +D+ +  N
Sbjct:  236 FLETSVRYNTSGLSRNFARRLLRAYDKDVTDPMEIRKRVFMGIERRKCAFEHRKKDLTTVPLGLVYGIVAAWILSFLTFASTLLLRRSIFYDMSDPLHWAQRTYRHIDEPIVGN 349          
BLAST of Ggra10066.t2 vs. uniprot
Match: A0A2V3J5C2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5C2_9FLOR)

HSP 1 Score: 62.8 bits (151), Expect = 1.170e-7
Identity = 59/231 (25.54%), Postives = 94/231 (40.69%), Query Frame = 0
Query:   56 CLQVNNSDFYIFPSNHST-----------PDGTVACGDSYAFRYVNQERV-QQSLGGDGIENCSDNGAICVFV-RSEGRVLFLSEPYRNGSEP--NEFVA-----TQMSFDPAPHLRTFAEKATDSFLHSVSEELEVRRRMIMGSRNTTCRFTSQGSEHTRIPTPLLAVSICVWVMSVVLFFICVPFKRRVFFDMNNPLHWANRARRAVDDEVTANFLQCTENSDGHQIYL 266
            C+ +N++ F+    N S             D    C         N ER   + +  + +  C   G  CVFV RS   V F    +        NE +      T +S++       FA +A D     V++   +RR +  GS  T C F +  S+ TR+    +   +  W +S+  F      +RR+F+DM++PLHWA +  R  D   T N +  T   +G +  L
Sbjct:  118 CIGINSTLFWQHAGNISDGRNIGNGGNIGDDEVFECEKKEVLYTANVERAPDEPVPDEYVVGCV--GTSCVFVYRSGNEVTFTDFVHSEDVSRVLNESITLPVWKTTISYNVTGLESAFATRAVDLLSQGVTDGFTLRRGVFAGSAITQCNFKT-FSDATRVRKGFIYAIVIAWALSISAFVGSFAIRRRIFYDMSDPLHWAQKTIRDNDLSDTDNPVVTTVYENGSRALL 345          
The following BLAST results are available for this feature:
BLAST of Ggra10066.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IMC18.810e-2428.57Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IUG06.240e-1830.16Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5B46.730e-1626.90Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IT052.880e-1128.07Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5C21.170e-725.54Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..16
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 223..268
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..200
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 201..222
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availableTMHMMTMhelixcoord: 200..222

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000862_piloncontigtig00000862_pilon:164848..165654 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10066.t2Ggra10066.t2Gracilaria gracilis GNS1m malemRNAtig00000862_pilon 164848..165654 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10066.t2 ID=Ggra10066.t2|Name=Ggra10066.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=269bp
MAITSMLLFVIVEILASSNTFTTFATESKLQRCNVTEPLLPGAYDATGAE
IGFFSCLQVNNSDFYIFPSNHSTPDGTVACGDSYAFRYVNQERVQQSLGG
DGIENCSDNGAICVFVRSEGRVLFLSEPYRNGSEPNEFVATQMSFDPAPH
LRTFAEKATDSFLHSVSEELEVRRRMIMGSRNTTCRFTSQGSEHTRIPTP
LLAVSICVWVMSVVLFFICVPFKRRVFFDMNNPLHWANRARRAVDDEVTA
NFLQCTENSDGHQIYLTE*
back to top