Ggra9998.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9998.t1
Unique NameGgra9998.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length97
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:140178..140559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog203124.Tery_2381
Max annot lvl1117|Cyanobacteria
Evalue4.33e-07
EggNOG OGs2ENFP@1|root,33G32@2|Bacteria,1GAET@1117|Cyanobacteria,1HDHQ@1150|Oscillatoriales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9998Ggra9998Gracilaria gracilis GNS1m malegenetig00000213_pilon 140178..140559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9998.t1Ggra9998.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 140178..140559 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9998.t1.stop1Ggra9998.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 140178..140180 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9998.t1.CDS1Ggra9998.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 140178..140317 -
Ggra9998.t1.CDS2Ggra9998.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000213_pilon 140409..140559 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9998.t1.exon1Ggra9998.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 140178..140317 -
Ggra9998.t1.exon2Ggra9998.t1.exon2Gracilaria gracilis GNS1m maleexontig00000213_pilon 140409..140559 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9998.t1.intron1Ggra9998.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000213_pilon 140318..140408 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9998.t1.start1Ggra9998.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 140557..140559 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9998.t1 ID=Ggra9998.t1|Name=Ggra9998.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=97bp
MVRLHTACVALNKQPNASEEEEKLDENAMRAAEIHEVLKGLEDFKTRIIE
DATRLAKKVRAPKKQLEAALASHPDIIKIDGHIAELEEELKILGDR*
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spliced messenger RNA

>Ggra9998.t1 ID=Ggra9998.t1|Name=Ggra9998.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=291bp|location=Sequence derived from alignment at tig00000213_pilon:140178..140559- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGATTACACACGGCTTGTGTCGCTCTTAATAAGCAACCGAATGC
ATCGGAAGAGGAAGAAAAGCTCGACGAGAACGCTATGAGGGCAGCCGAGA
TTCACGAGGTTTTGAAAGGACTCGAAGACTTCAAGACTCGCATTATAGAA
GATGCAACGAGGCTGGCGAAAAAAGTGAGGGCTCCGAAAAAGCAGTTAGA
AGCTGCCTTGGCGTCGCATCCAGACATAATAAAGATTGATGGACACATAG
CAGAGCTAGAAGAAGAGCTCAAAATCTTGGGTGATCGATAA
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protein sequence of Ggra9998.t1

>Ggra9998.t1 ID=Ggra9998.t1|Name=Ggra9998.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=97bp
MVRLHTACVALNKQPNASEEEEKLDENAMRAAEIHEVLKGLEDFKTRIIE
DATRLAKKVRAPKKQLEAALASHPDIIKIDGHIAELEEELKILGDR*
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mRNA from alignment at tig00000213_pilon:140178..140559-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9998.t1 ID=Ggra9998.t1|Name=Ggra9998.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=382bp|location=Sequence derived from alignment at tig00000213_pilon:140178..140559- (Gracilaria gracilis GNS1m male)
ATGGTGCGATTACACACGGCTTGTGTCGCTCTTAATAAGCAACCGAATGC
ATCGGAAGAGGAAGAAAAGCTCGACGAGAACGCTATGAGGGCAGCCGAGA
TTCACGAGGTTTTGAAAGGACTCGAAGACTTCAAGACTCGCATTATAGAA
GGTGCGTTAAACAGCCCTTCATAACCCCTCTTCATTAGCTTGCATAACGC
GACCTTTCTGACATCGTTTCTCCCTTTTATGCTTTCTACCAGATGCAACG
AGGCTGGCGAAAAAAGTGAGGGCTCCGAAAAAGCAGTTAGAAGCTGCCTT
GGCGTCGCATCCAGACATAATAAAGATTGATGGACACATAGCAGAGCTAG
AAGAAGAGCTCAAAATCTTGGGTGATCGATAA
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Coding sequence (CDS) from alignment at tig00000213_pilon:140178..140559-

>Ggra9998.t1 ID=Ggra9998.t1|Name=Ggra9998.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=291bp|location=Sequence derived from alignment at tig00000213_pilon:140178..140559- (Gracilaria gracilis GNS1m male)
ATGGTGCGATTACACACGGCTTGTGTCGCTCTTAATAAGCAACCGAATGC
ATCGGAAGAGGAAGAAAAGCTCGACGAGAACGCTATGAGGGCAGCCGAGA
TTCACGAGGTTTTGAAAGGACTCGAAGACTTCAAGACTCGCATTATAGAA
GATGCAACGAGGCTGGCGAAAAAAGTGAGGGCTCCGAAAAAGCAGTTAGA
AGCTGCCTTGGCGTCGCATCCAGACATAATAAAGATTGATGGACACATAG
CAGAGCTAGAAGAAGAGCTCAAAATCTTGGGTGATCGATAA
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