Ggra9997.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9997.t1
Unique NameGgra9997.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:139358..140025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog554065.XP_005848075.1
PFAMsESSS
Max annot lvl3041|Chlorophyta
Evalue2.12e-12
EggNOG OGs2BDG4@1|root,2S12I@2759|Eukaryota,37V8R@33090|Viridiplantae,34IU3@3041|Chlorophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9997Ggra9997Gracilaria gracilis GNS1m malegenetig00000213_pilon 139358..140025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9997.t1Ggra9997.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 139358..140025 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9997.t1.start1Ggra9997.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 139358..139360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9997.t1.CDS1Ggra9997.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 139358..139565 +
Ggra9997.t1.CDS2Ggra9997.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000213_pilon 139793..140025 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9997.t1.exon1Ggra9997.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 139358..139565 +
Ggra9997.t1.exon2Ggra9997.t1.exon2Gracilaria gracilis GNS1m maleexontig00000213_pilon 139793..140025 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9997.t1.intron1Ggra9997.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000213_pilon 139566..139792 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9997.t1.stop1Ggra9997.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 140023..140025 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9997.t1 ID=Ggra9997.t1|Name=Ggra9997.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=147bp
MSSSNFEVLVSGTGCDHQAHTKSHGRSSNASLHRATDITEVIMALRMRAL
TRAFHSSRLARGGGGGGGLGPFAETEVNEPGGRLFGEAIRKPGERRKLFD
WEVPYLGTLFLATVILGVGLNSRPGMSANEWAKEEAKARMAARGEL*
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spliced messenger RNA

>Ggra9997.t1 ID=Ggra9997.t1|Name=Ggra9997.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000213_pilon:139358..140025+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCCAGTAATTTCGAAGTGCTTGTCTCCGGAACTGGTTGTGACCA
TCAAGCGCACACAAAGTCGCACGGTCGTTCGTCCAACGCATCTCTACATC
GAGCTACTGATATCACTGAGGTCATCATGGCTTTGAGAATGCGAGCACTG
ACAAGAGCCTTCCATTCATCTCGGTTGGCTCGTGGCGGTGGCGGTGGCGG
CGGACTTGGACCCTTTGCGGAAACTGAAGTGAACGAGCCTGGAGGTCGTT
TATTTGGTGAAGCGATTCGAAAACCAGGAGAACGCAGAAAGCTTTTCGAT
TGGGAGGTCCCGTATCTCGGTACGCTTTTTCTTGCGACAGTGATTCTCGG
CGTGGGACTAAACTCTCGCCCGGGAATGTCCGCGAATGAATGGGCTAAGG
AAGAGGCAAAGGCACGCATGGCCGCGCGTGGAGAGCTTTAA
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protein sequence of Ggra9997.t1

>Ggra9997.t1 ID=Ggra9997.t1|Name=Ggra9997.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=147bp
MSSSNFEVLVSGTGCDHQAHTKSHGRSSNASLHRATDITEVIMALRMRAL
TRAFHSSRLARGGGGGGGLGPFAETEVNEPGGRLFGEAIRKPGERRKLFD
WEVPYLGTLFLATVILGVGLNSRPGMSANEWAKEEAKARMAARGEL*
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mRNA from alignment at tig00000213_pilon:139358..140025+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9997.t1 ID=Ggra9997.t1|Name=Ggra9997.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=668bp|location=Sequence derived from alignment at tig00000213_pilon:139358..140025+ (Gracilaria gracilis GNS1m male)
ATGTCATCCAGTAATTTCGAAGTGCTTGTCTCCGGAACTGGTTGTGACCA
TCAAGCGCACACAAAGTCGCACGGTCGTTCGTCCAACGCATCTCTACATC
GAGCTACTGATATCACTGAGGTCATCATGGCTTTGAGAATGCGAGCACTG
ACAAGAGCCTTCCATTCATCTCGGTTGGCTCGTGGCGGTGGCGGTGGCGG
CGGACTTGGTAAGTTTATGCCATTTCAATGCGATCGAGACTGAAGAATAG
CGAAACGACGAACCATACAAGCGTAACTTAAGTCGATGTCAACCACATCA
TAGGTGCATATGGAACAGCGCCTTTCAGGCAAAATGTTATTCTCGCTGTC
ACATACATAAATCGGCGAGCGACGGATGATTTGCTGTTTACTGACTGTGT
GCTTCGATAAACTCGTCAACGATCGTATTACGTAGGACCCTTTGCGGAAA
CTGAAGTGAACGAGCCTGGAGGTCGTTTATTTGGTGAAGCGATTCGAAAA
CCAGGAGAACGCAGAAAGCTTTTCGATTGGGAGGTCCCGTATCTCGGTAC
GCTTTTTCTTGCGACAGTGATTCTCGGCGTGGGACTAAACTCTCGCCCGG
GAATGTCCGCGAATGAATGGGCTAAGGAAGAGGCAAAGGCACGCATGGCC
GCGCGTGGAGAGCTTTAA
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Coding sequence (CDS) from alignment at tig00000213_pilon:139358..140025+

>Ggra9997.t1 ID=Ggra9997.t1|Name=Ggra9997.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=441bp|location=Sequence derived from alignment at tig00000213_pilon:139358..140025+ (Gracilaria gracilis GNS1m male)
ATGTCATCCAGTAATTTCGAAGTGCTTGTCTCCGGAACTGGTTGTGACCA
TCAAGCGCACACAAAGTCGCACGGTCGTTCGTCCAACGCATCTCTACATC
GAGCTACTGATATCACTGAGGTCATCATGGCTTTGAGAATGCGAGCACTG
ACAAGAGCCTTCCATTCATCTCGGTTGGCTCGTGGCGGTGGCGGTGGCGG
CGGACTTGGACCCTTTGCGGAAACTGAAGTGAACGAGCCTGGAGGTCGTT
TATTTGGTGAAGCGATTCGAAAACCAGGAGAACGCAGAAAGCTTTTCGAT
TGGGAGGTCCCGTATCTCGGTACGCTTTTTCTTGCGACAGTGATTCTCGG
CGTGGGACTAAACTCTCGCCCGGGAATGTCCGCGAATGAATGGGCTAAGG
AAGAGGCAAAGGCACGCATGGCCGCGCGTGGAGAGCTTTAA
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