Ggra9995.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9995.t1
Unique NameGgra9995.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:136966..137472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX45072
PFAMsPTPS
Max annot lvl2759|Eukaryota
Evalue6.86e-47
EggNOG OGs2CYMG@1|root,2S557@2759|Eukaryota
Description6-pyruvoyl tetrahydropterin synthase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9995Ggra9995Gracilaria gracilis GNS1m malegenetig00000213_pilon 136966..137472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9995.t1Ggra9995.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 136966..137472 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9995.t1.stop1Ggra9995.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 136966..136968 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9995.t1.CDS1Ggra9995.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 136966..137271 -
Ggra9995.t1.CDS2Ggra9995.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000213_pilon 137392..137472 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9995.t1.exon1Ggra9995.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 136966..137271 -
Ggra9995.t1.exon2Ggra9995.t1.exon2Gracilaria gracilis GNS1m maleexontig00000213_pilon 137392..137472 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9995.t1.intron1Ggra9995.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000213_pilon 137272..137391 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9995.t1.start1Ggra9995.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 137470..137472 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9995.t1 ID=Ggra9995.t1|Name=Ggra9995.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=129bp
MGYSLCVRDSMMIAHSFTGKEFGPAQKIHGATYVVDCEFITDKLESHVNW
VVDIGEASTVLKEVLSEFNYKNLDELDQFKEQNTTTEFMCRQVFDRIADR
FRGRFVGAIRIKMKESHVAWASYTGVVE*
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spliced messenger RNA

>Ggra9995.t1 ID=Ggra9995.t1|Name=Ggra9995.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=387bp|location=Sequence derived from alignment at tig00000213_pilon:136966..137472- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTACTCTTTATGCGTCAGAGATTCAATGATGATAGCTCATTCGTT
CACCGGGAAAGAATTTGGCCCAGCGCAGAAGATCCACGGTGCTACATACG
TCGTGGACTGCGAGTTCATAACTGACAAACTAGAGAGTCATGTCAACTGG
GTAGTAGACATAGGCGAAGCAAGCACCGTACTGAAAGAAGTGCTGTCAGA
GTTCAACTACAAGAACCTGGACGAATTGGACCAGTTCAAAGAGCAAAACA
CGACGACCGAGTTCATGTGTAGACAAGTGTTTGATCGTATTGCAGATCGC
TTCAGGGGCAGATTTGTCGGTGCGATTCGAATCAAGATGAAGGAATCGCA
TGTGGCATGGGCAAGTTATACCGGTGTAGTGGAATGA
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protein sequence of Ggra9995.t1

>Ggra9995.t1 ID=Ggra9995.t1|Name=Ggra9995.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=129bp
MGYSLCVRDSMMIAHSFTGKEFGPAQKIHGATYVVDCEFITDKLESHVNW
VVDIGEASTVLKEVLSEFNYKNLDELDQFKEQNTTTEFMCRQVFDRIADR
FRGRFVGAIRIKMKESHVAWASYTGVVE*
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mRNA from alignment at tig00000213_pilon:136966..137472-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9995.t1 ID=Ggra9995.t1|Name=Ggra9995.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=507bp|location=Sequence derived from alignment at tig00000213_pilon:136966..137472- (Gracilaria gracilis GNS1m male)
ATGGGTTACTCTTTATGCGTCAGAGATTCAATGATGATAGCTCATTCGTT
CACCGGGAAAGAATTTGGCCCAGCGCAGAAGGTATGTCATCCAAAACGTT
CCCCGCAAGCAAATCATGCTCAAAAGTGGGTCGAAACACGAAGTACTGAA
GCCGAACCTAACCAAGAGAGCAAGTTCGTGATGTTCTGTTTTGGTTGACA
GATCCACGGTGCTACATACGTCGTGGACTGCGAGTTCATAACTGACAAAC
TAGAGAGTCATGTCAACTGGGTAGTAGACATAGGCGAAGCAAGCACCGTA
CTGAAAGAAGTGCTGTCAGAGTTCAACTACAAGAACCTGGACGAATTGGA
CCAGTTCAAAGAGCAAAACACGACGACCGAGTTCATGTGTAGACAAGTGT
TTGATCGTATTGCAGATCGCTTCAGGGGCAGATTTGTCGGTGCGATTCGA
ATCAAGATGAAGGAATCGCATGTGGCATGGGCAAGTTATACCGGTGTAGT
GGAATGA
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Coding sequence (CDS) from alignment at tig00000213_pilon:136966..137472-

>Ggra9995.t1 ID=Ggra9995.t1|Name=Ggra9995.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=387bp|location=Sequence derived from alignment at tig00000213_pilon:136966..137472- (Gracilaria gracilis GNS1m male)
ATGGGTTACTCTTTATGCGTCAGAGATTCAATGATGATAGCTCATTCGTT
CACCGGGAAAGAATTTGGCCCAGCGCAGAAGATCCACGGTGCTACATACG
TCGTGGACTGCGAGTTCATAACTGACAAACTAGAGAGTCATGTCAACTGG
GTAGTAGACATAGGCGAAGCAAGCACCGTACTGAAAGAAGTGCTGTCAGA
GTTCAACTACAAGAACCTGGACGAATTGGACCAGTTCAAAGAGCAAAACA
CGACGACCGAGTTCATGTGTAGACAAGTGTTTGATCGTATTGCAGATCGC
TTCAGGGGCAGATTTGTCGGTGCGATTCGAATCAAGATGAAGGAATCGCA
TGTGGCATGGGCAAGTTATACCGGTGTAGTGGAATGA
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