Ggra9994.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9994.t1
Unique NameGgra9994.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length143
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:136320..136748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7425.NV13168-PA
Preferred nameRPS12
PFAMsRibosomal_L7Ae
Max annot lvl33208|Metazoa
KEGG koko:K02951
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000184,GO:0000956,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0015935,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0022627,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1990904
Evalue1.09e-48
EggNOG OGsCOG1358@1|root,KOG3406@2759|Eukaryota,3A22P@33154|Opisthokonta,3BQNX@33208|Metazoa,3D7EY@33213|Bilateria,41ZC5@6656|Arthropoda,3SMWM@50557|Insecta,46I2X@7399|Hymenoptera
Description40S ribosomal protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9994Ggra9994Gracilaria gracilis GNS1m malegenetig00000213_pilon 136320..136748 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9994.t1.start1Ggra9994.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 136320..136322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9994.t1.CDS1Ggra9994.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 136320..136748 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9994.t1.exon1Ggra9994.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 136320..136748 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9994.t1.stop1Ggra9994.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 136746..136748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9994.t1Ggra9994.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 136320..136748 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9994.t1 ID=Ggra9994.t1|Name=Ggra9994.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=143bp
MSEGEVAIDAVPEDVGEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDR
GQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKI
DEEGNATKVVGSTSCVIKEFGESSPGYEFLLEYLKENKDGDE*
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spliced messenger RNA

>Ggra9994.t1 ID=Ggra9994.t1|Name=Ggra9994.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=429bp|location=Sequence derived from alignment at tig00000213_pilon:136320..136748+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGAGGGTGAAGTTGCGATCGATGCCGTGCCCGAGGATGTCGGGGA
AATGGACATTCTTAAAGCTCTTCAGGAAGTGCTTAAAAAGTCTCTTGTTC
ACGACGGCTTAGTTCGTGGGTTAAATGAGGTCGCGAAGGCCTTGGATCGT
GGTCAGGCTCAGCTGTGCATTCTCGCATCTGACTGCGATGAACCTCGATA
CACTCGTCTCATCGAAGCGCTTTGCGCTGCCCATGAGGTGGCGCTGGTGC
GGGTTCCGGACAAGAAACAGCTTGGAGAATGGGCTGGTCTTTGCAAGATC
GATGAAGAAGGCAATGCTACAAAGGTGGTTGGCTCTACTAGTTGTGTTAT
CAAGGAGTTCGGGGAGAGTTCCCCTGGATACGAATTCTTGTTGGAGTACC
TGAAGGAAAACAAGGACGGTGATGAATGA
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protein sequence of Ggra9994.t1

>Ggra9994.t1 ID=Ggra9994.t1|Name=Ggra9994.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=143bp
MSEGEVAIDAVPEDVGEMDILKALQEVLKKSLVHDGLVRGLNEVAKALDR
GQAQLCILASDCDEPRYTRLIEALCAAHEVALVRVPDKKQLGEWAGLCKI
DEEGNATKVVGSTSCVIKEFGESSPGYEFLLEYLKENKDGDE*
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mRNA from alignment at tig00000213_pilon:136320..136748+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9994.t1 ID=Ggra9994.t1|Name=Ggra9994.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=429bp|location=Sequence derived from alignment at tig00000213_pilon:136320..136748+ (Gracilaria gracilis GNS1m male)
ATGTCTGAGGGTGAAGTTGCGATCGATGCCGTGCCCGAGGATGTCGGGGA
AATGGACATTCTTAAAGCTCTTCAGGAAGTGCTTAAAAAGTCTCTTGTTC
ACGACGGCTTAGTTCGTGGGTTAAATGAGGTCGCGAAGGCCTTGGATCGT
GGTCAGGCTCAGCTGTGCATTCTCGCATCTGACTGCGATGAACCTCGATA
CACTCGTCTCATCGAAGCGCTTTGCGCTGCCCATGAGGTGGCGCTGGTGC
GGGTTCCGGACAAGAAACAGCTTGGAGAATGGGCTGGTCTTTGCAAGATC
GATGAAGAAGGCAATGCTACAAAGGTGGTTGGCTCTACTAGTTGTGTTAT
CAAGGAGTTCGGGGAGAGTTCCCCTGGATACGAATTCTTGTTGGAGTACC
TGAAGGAAAACAAGGACGGTGATGAATGA
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Coding sequence (CDS) from alignment at tig00000213_pilon:136320..136748+

>Ggra9994.t1 ID=Ggra9994.t1|Name=Ggra9994.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=429bp|location=Sequence derived from alignment at tig00000213_pilon:136320..136748+ (Gracilaria gracilis GNS1m male)
ATGTCTGAGGGTGAAGTTGCGATCGATGCCGTGCCCGAGGATGTCGGGGA
AATGGACATTCTTAAAGCTCTTCAGGAAGTGCTTAAAAAGTCTCTTGTTC
ACGACGGCTTAGTTCGTGGGTTAAATGAGGTCGCGAAGGCCTTGGATCGT
GGTCAGGCTCAGCTGTGCATTCTCGCATCTGACTGCGATGAACCTCGATA
CACTCGTCTCATCGAAGCGCTTTGCGCTGCCCATGAGGTGGCGCTGGTGC
GGGTTCCGGACAAGAAACAGCTTGGAGAATGGGCTGGTCTTTGCAAGATC
GATGAAGAAGGCAATGCTACAAAGGTGGTTGGCTCTACTAGTTGTGTTAT
CAAGGAGTTCGGGGAGAGTTCCCCTGGATACGAATTCTTGTTGGAGTACC
TGAAGGAAAACAAGGACGGTGATGAATGA
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