Ggra9993.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9993.t1
Unique NameGgra9993.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length459
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:133021..134397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005649224.1
PFAMsCupin_8,NTP_transf_2
Max annot lvl3041|Chlorophyta
Evalue3.52e-24
EggNOG OGsKOG2132@1|root,KOG2132@2759|Eukaryota,3810E@33090|Viridiplantae,34N0R@3041|Chlorophyta
DescriptionCupin-like domain
COG categoryBT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9993Ggra9993Gracilaria gracilis GNS1m malegenetig00000213_pilon 133021..134397 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9993.t1.stop1Ggra9993.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 133021..133023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9993.t1.CDS1Ggra9993.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 133021..134397 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9993.t1.exon1Ggra9993.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 133021..134397 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9993.t1.start1Ggra9993.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 134395..134397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9993.t1Ggra9993.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 133021..134397 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9993.t1 ID=Ggra9993.t1|Name=Ggra9993.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=459bp
MPISLNRLSSAINVRDDERKCMTLFTQQSHASYAFLKLHALQWLCKRCLR
SLTELIVPKTRKHARDLVPCFGLCSTVFPEHADLFLAALQVACAHETNGF
VGLGQEGILRVGLETARSLVEVVEDVFLKQTFRSNPDSPVSNELKASIGR
PITFQNALQAVEQTISSALFQARRSPTSAPFVRCALPKIAIEEFGQVTEK
DIEEKVLEHDLNLSGFLTDCDEPFIVRSAMNVENSQSLLTSLATNHLTVS
CRISPTNIVTFCRSEHPWIKDKLFTPSSVLRSVSTNEAIRRLKADCSSSP
LVYKDSVREFLYIQTDAFRSEQLFDVGGNQNLQIVQGERIWISAHGTVSS
LHYDASHSALLHISGKKRMLFFPPEALDGLGIYPLGHPLHRRARVNLDHS
QSIIFRRFWKECSSLAMEAVLGPGDLIVFPPNWSHYTESIAAREELSISR
TIRYLCQL*
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spliced messenger RNA

>Ggra9993.t1 ID=Ggra9993.t1|Name=Ggra9993.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1377bp|location=Sequence derived from alignment at tig00000213_pilon:133021..134397- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGATAAGTCTAAACAGATTAAGCTCCGCGATTAACGTAAGAGATGA
TGAACGAAAATGTATGACGCTTTTTACCCAACAGAGTCATGCCAGTTATG
CTTTTTTGAAACTCCACGCCCTGCAATGGTTGTGCAAGCGATGTCTACGT
TCCCTAACAGAACTCATAGTCCCGAAGACTAGAAAACATGCCCGAGATTT
GGTACCTTGCTTTGGGTTATGTTCCACAGTATTTCCCGAACATGCTGATC
TGTTCTTGGCTGCTCTGCAGGTTGCCTGTGCCCACGAAACTAATGGATTT
GTTGGTTTGGGTCAGGAAGGTATTCTCAGAGTGGGGTTAGAGACTGCGCG
AAGTCTCGTAGAGGTGGTGGAAGATGTCTTTTTGAAGCAGACCTTTCGTT
CCAACCCTGATTCGCCCGTTTCGAATGAACTAAAAGCCTCAATTGGGAGA
CCAATAACCTTCCAAAACGCGCTCCAAGCTGTAGAGCAAACTATTTCGAG
CGCCCTCTTTCAAGCAAGGAGATCACCAACGTCTGCTCCCTTTGTTCGAT
GCGCACTACCAAAAATAGCTATTGAAGAGTTTGGACAAGTAACGGAAAAA
GATATTGAGGAGAAAGTTTTGGAACATGATTTGAATCTTTCCGGCTTTCT
GACTGACTGTGACGAACCGTTTATCGTCCGAAGCGCCATGAATGTCGAAA
ACTCACAGTCTCTACTCACAAGTTTGGCAACGAATCACCTAACAGTTTCT
TGCCGAATTTCGCCCACAAACATCGTAACATTTTGTCGTAGTGAGCACCC
ATGGATTAAGGATAAATTATTCACTCCTTCAAGCGTTCTTCGTTCAGTTT
CAACTAATGAAGCCATTCGACGGCTTAAAGCTGACTGCAGCTCATCACCT
CTGGTGTACAAAGATTCAGTTCGAGAGTTCTTGTACATCCAGACAGATGC
ATTCAGGTCAGAGCAACTGTTTGATGTGGGAGGGAATCAGAATCTGCAAA
TCGTCCAAGGGGAAAGAATATGGATTAGCGCACATGGCACCGTATCTAGT
CTACATTACGATGCATCCCATTCAGCGCTGCTTCACATTAGTGGAAAGAA
ACGAATGTTATTCTTTCCACCCGAAGCTCTTGACGGACTTGGTATATATC
CCTTAGGACACCCTCTTCATCGACGGGCGCGAGTGAATCTTGATCATAGC
CAATCTATAATCTTCCGACGGTTCTGGAAAGAATGCTCGTCGCTTGCGAT
GGAGGCCGTCCTTGGTCCCGGCGATCTGATTGTATTCCCGCCGAATTGGT
CGCACTACACAGAAAGCATTGCTGCAAGAGAAGAGCTTTCTATTTCTCGT
ACTATTAGATATTTATGCCAACTTTGA
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protein sequence of Ggra9993.t1

>Ggra9993.t1 ID=Ggra9993.t1|Name=Ggra9993.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=459bp
MPISLNRLSSAINVRDDERKCMTLFTQQSHASYAFLKLHALQWLCKRCLR
SLTELIVPKTRKHARDLVPCFGLCSTVFPEHADLFLAALQVACAHETNGF
VGLGQEGILRVGLETARSLVEVVEDVFLKQTFRSNPDSPVSNELKASIGR
PITFQNALQAVEQTISSALFQARRSPTSAPFVRCALPKIAIEEFGQVTEK
DIEEKVLEHDLNLSGFLTDCDEPFIVRSAMNVENSQSLLTSLATNHLTVS
CRISPTNIVTFCRSEHPWIKDKLFTPSSVLRSVSTNEAIRRLKADCSSSP
LVYKDSVREFLYIQTDAFRSEQLFDVGGNQNLQIVQGERIWISAHGTVSS
LHYDASHSALLHISGKKRMLFFPPEALDGLGIYPLGHPLHRRARVNLDHS
QSIIFRRFWKECSSLAMEAVLGPGDLIVFPPNWSHYTESIAAREELSISR
TIRYLCQL*
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mRNA from alignment at tig00000213_pilon:133021..134397-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9993.t1 ID=Ggra9993.t1|Name=Ggra9993.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1377bp|location=Sequence derived from alignment at tig00000213_pilon:133021..134397- (Gracilaria gracilis GNS1m male)
ATGCCGATAAGTCTAAACAGATTAAGCTCCGCGATTAACGTAAGAGATGA
TGAACGAAAATGTATGACGCTTTTTACCCAACAGAGTCATGCCAGTTATG
CTTTTTTGAAACTCCACGCCCTGCAATGGTTGTGCAAGCGATGTCTACGT
TCCCTAACAGAACTCATAGTCCCGAAGACTAGAAAACATGCCCGAGATTT
GGTACCTTGCTTTGGGTTATGTTCCACAGTATTTCCCGAACATGCTGATC
TGTTCTTGGCTGCTCTGCAGGTTGCCTGTGCCCACGAAACTAATGGATTT
GTTGGTTTGGGTCAGGAAGGTATTCTCAGAGTGGGGTTAGAGACTGCGCG
AAGTCTCGTAGAGGTGGTGGAAGATGTCTTTTTGAAGCAGACCTTTCGTT
CCAACCCTGATTCGCCCGTTTCGAATGAACTAAAAGCCTCAATTGGGAGA
CCAATAACCTTCCAAAACGCGCTCCAAGCTGTAGAGCAAACTATTTCGAG
CGCCCTCTTTCAAGCAAGGAGATCACCAACGTCTGCTCCCTTTGTTCGAT
GCGCACTACCAAAAATAGCTATTGAAGAGTTTGGACAAGTAACGGAAAAA
GATATTGAGGAGAAAGTTTTGGAACATGATTTGAATCTTTCCGGCTTTCT
GACTGACTGTGACGAACCGTTTATCGTCCGAAGCGCCATGAATGTCGAAA
ACTCACAGTCTCTACTCACAAGTTTGGCAACGAATCACCTAACAGTTTCT
TGCCGAATTTCGCCCACAAACATCGTAACATTTTGTCGTAGTGAGCACCC
ATGGATTAAGGATAAATTATTCACTCCTTCAAGCGTTCTTCGTTCAGTTT
CAACTAATGAAGCCATTCGACGGCTTAAAGCTGACTGCAGCTCATCACCT
CTGGTGTACAAAGATTCAGTTCGAGAGTTCTTGTACATCCAGACAGATGC
ATTCAGGTCAGAGCAACTGTTTGATGTGGGAGGGAATCAGAATCTGCAAA
TCGTCCAAGGGGAAAGAATATGGATTAGCGCACATGGCACCGTATCTAGT
CTACATTACGATGCATCCCATTCAGCGCTGCTTCACATTAGTGGAAAGAA
ACGAATGTTATTCTTTCCACCCGAAGCTCTTGACGGACTTGGTATATATC
CCTTAGGACACCCTCTTCATCGACGGGCGCGAGTGAATCTTGATCATAGC
CAATCTATAATCTTCCGACGGTTCTGGAAAGAATGCTCGTCGCTTGCGAT
GGAGGCCGTCCTTGGTCCCGGCGATCTGATTGTATTCCCGCCGAATTGGT
CGCACTACACAGAAAGCATTGCTGCAAGAGAAGAGCTTTCTATTTCTCGT
ACTATTAGATATTTATGCCAACTTTGA
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Coding sequence (CDS) from alignment at tig00000213_pilon:133021..134397-

>Ggra9993.t1 ID=Ggra9993.t1|Name=Ggra9993.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1377bp|location=Sequence derived from alignment at tig00000213_pilon:133021..134397- (Gracilaria gracilis GNS1m male)
ATGCCGATAAGTCTAAACAGATTAAGCTCCGCGATTAACGTAAGAGATGA
TGAACGAAAATGTATGACGCTTTTTACCCAACAGAGTCATGCCAGTTATG
CTTTTTTGAAACTCCACGCCCTGCAATGGTTGTGCAAGCGATGTCTACGT
TCCCTAACAGAACTCATAGTCCCGAAGACTAGAAAACATGCCCGAGATTT
GGTACCTTGCTTTGGGTTATGTTCCACAGTATTTCCCGAACATGCTGATC
TGTTCTTGGCTGCTCTGCAGGTTGCCTGTGCCCACGAAACTAATGGATTT
GTTGGTTTGGGTCAGGAAGGTATTCTCAGAGTGGGGTTAGAGACTGCGCG
AAGTCTCGTAGAGGTGGTGGAAGATGTCTTTTTGAAGCAGACCTTTCGTT
CCAACCCTGATTCGCCCGTTTCGAATGAACTAAAAGCCTCAATTGGGAGA
CCAATAACCTTCCAAAACGCGCTCCAAGCTGTAGAGCAAACTATTTCGAG
CGCCCTCTTTCAAGCAAGGAGATCACCAACGTCTGCTCCCTTTGTTCGAT
GCGCACTACCAAAAATAGCTATTGAAGAGTTTGGACAAGTAACGGAAAAA
GATATTGAGGAGAAAGTTTTGGAACATGATTTGAATCTTTCCGGCTTTCT
GACTGACTGTGACGAACCGTTTATCGTCCGAAGCGCCATGAATGTCGAAA
ACTCACAGTCTCTACTCACAAGTTTGGCAACGAATCACCTAACAGTTTCT
TGCCGAATTTCGCCCACAAACATCGTAACATTTTGTCGTAGTGAGCACCC
ATGGATTAAGGATAAATTATTCACTCCTTCAAGCGTTCTTCGTTCAGTTT
CAACTAATGAAGCCATTCGACGGCTTAAAGCTGACTGCAGCTCATCACCT
CTGGTGTACAAAGATTCAGTTCGAGAGTTCTTGTACATCCAGACAGATGC
ATTCAGGTCAGAGCAACTGTTTGATGTGGGAGGGAATCAGAATCTGCAAA
TCGTCCAAGGGGAAAGAATATGGATTAGCGCACATGGCACCGTATCTAGT
CTACATTACGATGCATCCCATTCAGCGCTGCTTCACATTAGTGGAAAGAA
ACGAATGTTATTCTTTCCACCCGAAGCTCTTGACGGACTTGGTATATATC
CCTTAGGACACCCTCTTCATCGACGGGCGCGAGTGAATCTTGATCATAGC
CAATCTATAATCTTCCGACGGTTCTGGAAAGAATGCTCGTCGCTTGCGAT
GGAGGCCGTCCTTGGTCCCGGCGATCTGATTGTATTCCCGCCGAATTGGT
CGCACTACACAGAAAGCATTGCTGCAAGAGAAGAGCTTTCTATTTCTCGT
ACTATTAGATATTTATGCCAACTTTGA
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