Ggra9991.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9991.t1
Unique Name	Ggra9991.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	677

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000213_pilon	contig	tig00000213_pilon:123960..125990 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9991	Ggra9991	Gracilaria gracilis GNS1m male	gene	tig00000213_pilon 123960..125990 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9991.t1.stop1	Ggra9991.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000213_pilon 123960..123962 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9991.t1.CDS1	Ggra9991.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000213_pilon 123960..125990 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9991.t1.exon1	Ggra9991.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000213_pilon 123960..125990 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9991.t1.start1	Ggra9991.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000213_pilon 125988..125990 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9991.t1	Ggra9991.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000213_pilon 123960..125990 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000213_pilon:123960..125990-
coding sequence from alignment at tig00000213_pilon:123960..125990-

mRNA sequence

>Ggra9991.t1 ID=Ggra9991.t1|Name=Ggra9991.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=677bp
MLRSPSFDFEAQFHHAQEGYSDSKLHIDLNSPMDRRLQRKIVVCQKRFHR
YRSRTPPPHARQESNPSIDQAHITRKPLIKNIPRALKTFISRSPISQPQN
VPLRLNRLHGADHSRMSVLSPSLRKEFRKISYQNPQSSHIVVNVDSSASP
QSPRKRNSRRQSIPHPQPQLHLQTQTQPQPQLLLQTRAQHKPTLKPVRLA
GDDHNDIVPTQIVPSRQSPPSSLNENHEHIAMELKSTASVSSRSVQEQNQ
TVHLPEEQAVHEQQSDAPSKPTELPLNISTLINKYDKNNSTPDKSNNNIE
RLSLIPEAQHKVATMRALFEADQAERQRLSSLKSPPRSNTTPFLKPKPYN
AISQPSVERTSFSPLSTTSPSISTLRNNPEQIPKRHGTRFVKLVDSPKSP
IDHKGIGTEGSVISSVTKTPDDDTILGDTDLEEERIALDPISRVQEADHR
DIPERMNLRDLFESLELSPDEKETTAVKSPKSNKSRERSSTVAKLIARYG
GTDQSTEKENGRRLETENDAPRKEKRTVEEKVNRSLVMDEGDEIQKVYKT
EAKDKKKLGRSVDQIPERQGGVEAIPWEARIKSFNAEVEEAASMAYIRKV
MSHDGENDRFKSFSVYSGTDQDSQLRTRSEASGRRWRRRSARAQNKSWLS
RKANEQVHKVKKRVGTMRNIISADDY*

spliced messenger RNA

>Ggra9991.t1 ID=Ggra9991.t1|Name=Ggra9991.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2031bp|location=Sequence derived from alignment at tig00000213_pilon:123960..125990- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCGTTCGCCGTCGTTTGACTTCGAGGCGCAGTTTCATCACGCTCA
GGAGGGCTATTCCGATTCCAAGCTGCATATCGACCTCAACTCCCCGATGG
ATCGTCGTCTGCAGCGCAAGATCGTCGTTTGTCAGAAGCGCTTCCATCGC
TACAGGTCCAGGACGCCGCCGCCACACGCGCGTCAGGAGTCGAACCCGTC
TATTGATCAAGCGCATATCACGCGCAAGCCTTTGATCAAGAACATTCCTC
GCGCCTTGAAGACGTTCATTTCGCGCTCTCCCATTTCGCAGCCGCAGAAT
GTCCCACTCAGGCTTAACCGTTTGCACGGTGCCGACCACAGCCGTATGTC
TGTATTGTCACCCTCGCTTCGTAAGGAGTTTCGAAAGATAAGCTATCAGA
ATCCCCAGTCTTCTCACATTGTTGTCAACGTTGACTCATCTGCGTCGCCA
CAGTCTCCGAGGAAGAGGAATTCGAGGCGCCAAAGTATCCCACACCCACA
GCCTCAATTGCACCTCCAAACTCAAACTCAACCTCAACCGCAGCTGCTTC
TCCAGACCCGAGCGCAGCACAAGCCCACTTTGAAGCCTGTTCGCCTAGCT
GGTGATGATCACAATGACATTGTTCCTACACAAATTGTACCTTCGAGGCA
ATCCCCCCCATCGAGCTTGAACGAAAATCACGAGCACATCGCAATGGAAC
TCAAGAGCACGGCTTCCGTTTCATCCCGCAGCGTCCAAGAACAAAATCAA
ACAGTTCATCTTCCGGAAGAACAAGCAGTCCATGAGCAGCAATCCGACGC
ACCATCTAAACCAACTGAGCTTCCCCTCAACATATCGACATTGATTAATA
AGTATGACAAGAATAACTCTACGCCAGACAAATCGAACAACAACATCGAG
CGGCTCTCACTCATCCCCGAGGCTCAACACAAAGTCGCTACCATGCGAGC
TCTATTTGAAGCCGATCAGGCAGAACGGCAGCGTCTGTCATCGTTGAAGA
GCCCCCCGCGAAGCAATACTACGCCGTTCTTGAAACCCAAACCGTACAAC
GCTATATCTCAACCAAGTGTGGAAAGAACCTCTTTCTCACCGTTAAGTAC
AACCTCCCCATCCATTAGCACGTTACGAAACAACCCTGAACAGATTCCGA
AACGTCATGGAACCCGTTTTGTGAAACTCGTTGACAGTCCGAAGTCTCCT
ATTGATCATAAGGGCATCGGTACAGAAGGTTCTGTGATTTCTTCTGTGAC
GAAGACTCCAGACGATGATACAATTTTGGGCGACACAGATTTGGAGGAAG
AACGCATAGCTTTAGACCCTATATCTCGTGTACAGGAAGCTGATCACCGG
GATATCCCGGAAAGGATGAACTTGAGGGATCTCTTTGAGTCGCTCGAACT
GTCTCCGGATGAAAAGGAGACTACGGCTGTCAAGAGCCCCAAATCTAACA
AAAGCAGAGAACGTTCTTCAACCGTTGCAAAGCTCATCGCCAGATACGGG
GGAACTGATCAATCGACCGAGAAGGAGAATGGTCGTAGGTTGGAAACAGA
AAACGACGCTCCACGAAAGGAAAAGCGTACAGTTGAGGAAAAGGTGAACA
GATCGCTTGTTATGGACGAAGGGGATGAGATCCAGAAGGTGTACAAGACT
GAGGCGAAGGACAAAAAGAAACTTGGACGATCAGTAGACCAGATCCCGGA
ACGTCAGGGAGGGGTTGAAGCCATTCCCTGGGAAGCCCGTATCAAATCCT
TCAACGCAGAAGTAGAGGAAGCCGCGAGCATGGCATATATCAGAAAAGTT
ATGTCTCATGACGGAGAGAACGATCGCTTCAAGTCTTTCAGTGTTTATAG
TGGCACGGACCAAGACTCGCAGTTGAGGACAAGAAGTGAGGCGAGTGGCC
GTAGGTGGCGAAGGCGTAGTGCTCGAGCACAAAACAAGTCTTGGTTATCC
AGAAAAGCTAATGAACAAGTGCACAAAGTGAAGAAACGTGTTGGTACGAT
GAGAAATATTATATCTGCTGACGATTATTAG

protein sequence of Ggra9991.t1

>Ggra9991.t1 ID=Ggra9991.t1|Name=Ggra9991.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=677bp
MLRSPSFDFEAQFHHAQEGYSDSKLHIDLNSPMDRRLQRKIVVCQKRFHR
YRSRTPPPHARQESNPSIDQAHITRKPLIKNIPRALKTFISRSPISQPQN
VPLRLNRLHGADHSRMSVLSPSLRKEFRKISYQNPQSSHIVVNVDSSASP
QSPRKRNSRRQSIPHPQPQLHLQTQTQPQPQLLLQTRAQHKPTLKPVRLA
GDDHNDIVPTQIVPSRQSPPSSLNENHEHIAMELKSTASVSSRSVQEQNQ
TVHLPEEQAVHEQQSDAPSKPTELPLNISTLINKYDKNNSTPDKSNNNIE
RLSLIPEAQHKVATMRALFEADQAERQRLSSLKSPPRSNTTPFLKPKPYN
AISQPSVERTSFSPLSTTSPSISTLRNNPEQIPKRHGTRFVKLVDSPKSP
IDHKGIGTEGSVISSVTKTPDDDTILGDTDLEEERIALDPISRVQEADHR
DIPERMNLRDLFESLELSPDEKETTAVKSPKSNKSRERSSTVAKLIARYG
GTDQSTEKENGRRLETENDAPRKEKRTVEEKVNRSLVMDEGDEIQKVYKT
EAKDKKKLGRSVDQIPERQGGVEAIPWEARIKSFNAEVEEAASMAYIRKV
MSHDGENDRFKSFSVYSGTDQDSQLRTRSEASGRRWRRRSARAQNKSWLS
RKANEQVHKVKKRVGTMRNIISADDY*

mRNA from alignment at tig00000213_pilon:123960..125990-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9991.t1 ID=Ggra9991.t1|Name=Ggra9991.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2031bp|location=Sequence derived from alignment at tig00000213_pilon:123960..125990- (Gracilaria gracilis GNS1m male)
ATGCTTCGTTCGCCGTCGTTTGACTTCGAGGCGCAGTTTCATCACGCTCA
GGAGGGCTATTCCGATTCCAAGCTGCATATCGACCTCAACTCCCCGATGG
ATCGTCGTCTGCAGCGCAAGATCGTCGTTTGTCAGAAGCGCTTCCATCGC
TACAGGTCCAGGACGCCGCCGCCACACGCGCGTCAGGAGTCGAACCCGTC
TATTGATCAAGCGCATATCACGCGCAAGCCTTTGATCAAGAACATTCCTC
GCGCCTTGAAGACGTTCATTTCGCGCTCTCCCATTTCGCAGCCGCAGAAT
GTCCCACTCAGGCTTAACCGTTTGCACGGTGCCGACCACAGCCGTATGTC
TGTATTGTCACCCTCGCTTCGTAAGGAGTTTCGAAAGATAAGCTATCAGA
ATCCCCAGTCTTCTCACATTGTTGTCAACGTTGACTCATCTGCGTCGCCA
CAGTCTCCGAGGAAGAGGAATTCGAGGCGCCAAAGTATCCCACACCCACA
GCCTCAATTGCACCTCCAAACTCAAACTCAACCTCAACCGCAGCTGCTTC
TCCAGACCCGAGCGCAGCACAAGCCCACTTTGAAGCCTGTTCGCCTAGCT
GGTGATGATCACAATGACATTGTTCCTACACAAATTGTACCTTCGAGGCA
ATCCCCCCCATCGAGCTTGAACGAAAATCACGAGCACATCGCAATGGAAC
TCAAGAGCACGGCTTCCGTTTCATCCCGCAGCGTCCAAGAACAAAATCAA
ACAGTTCATCTTCCGGAAGAACAAGCAGTCCATGAGCAGCAATCCGACGC
ACCATCTAAACCAACTGAGCTTCCCCTCAACATATCGACATTGATTAATA
AGTATGACAAGAATAACTCTACGCCAGACAAATCGAACAACAACATCGAG
CGGCTCTCACTCATCCCCGAGGCTCAACACAAAGTCGCTACCATGCGAGC
TCTATTTGAAGCCGATCAGGCAGAACGGCAGCGTCTGTCATCGTTGAAGA
GCCCCCCGCGAAGCAATACTACGCCGTTCTTGAAACCCAAACCGTACAAC
GCTATATCTCAACCAAGTGTGGAAAGAACCTCTTTCTCACCGTTAAGTAC
AACCTCCCCATCCATTAGCACGTTACGAAACAACCCTGAACAGATTCCGA
AACGTCATGGAACCCGTTTTGTGAAACTCGTTGACAGTCCGAAGTCTCCT
ATTGATCATAAGGGCATCGGTACAGAAGGTTCTGTGATTTCTTCTGTGAC
GAAGACTCCAGACGATGATACAATTTTGGGCGACACAGATTTGGAGGAAG
AACGCATAGCTTTAGACCCTATATCTCGTGTACAGGAAGCTGATCACCGG
GATATCCCGGAAAGGATGAACTTGAGGGATCTCTTTGAGTCGCTCGAACT
GTCTCCGGATGAAAAGGAGACTACGGCTGTCAAGAGCCCCAAATCTAACA
AAAGCAGAGAACGTTCTTCAACCGTTGCAAAGCTCATCGCCAGATACGGG
GGAACTGATCAATCGACCGAGAAGGAGAATGGTCGTAGGTTGGAAACAGA
AAACGACGCTCCACGAAAGGAAAAGCGTACAGTTGAGGAAAAGGTGAACA
GATCGCTTGTTATGGACGAAGGGGATGAGATCCAGAAGGTGTACAAGACT
GAGGCGAAGGACAAAAAGAAACTTGGACGATCAGTAGACCAGATCCCGGA
ACGTCAGGGAGGGGTTGAAGCCATTCCCTGGGAAGCCCGTATCAAATCCT
TCAACGCAGAAGTAGAGGAAGCCGCGAGCATGGCATATATCAGAAAAGTT
ATGTCTCATGACGGAGAGAACGATCGCTTCAAGTCTTTCAGTGTTTATAG
TGGCACGGACCAAGACTCGCAGTTGAGGACAAGAAGTGAGGCGAGTGGCC
GTAGGTGGCGAAGGCGTAGTGCTCGAGCACAAAACAAGTCTTGGTTATCC
AGAAAAGCTAATGAACAAGTGCACAAAGTGAAGAAACGTGTTGGTACGAT
GAGAAATATTATATCTGCTGACGATTATTAG

Coding sequence (CDS) from alignment at tig00000213_pilon:123960..125990-

>Ggra9991.t1 ID=Ggra9991.t1|Name=Ggra9991.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2031bp|location=Sequence derived from alignment at tig00000213_pilon:123960..125990- (Gracilaria gracilis GNS1m male)
ATGCTTCGTTCGCCGTCGTTTGACTTCGAGGCGCAGTTTCATCACGCTCA
GGAGGGCTATTCCGATTCCAAGCTGCATATCGACCTCAACTCCCCGATGG
ATCGTCGTCTGCAGCGCAAGATCGTCGTTTGTCAGAAGCGCTTCCATCGC
TACAGGTCCAGGACGCCGCCGCCACACGCGCGTCAGGAGTCGAACCCGTC
TATTGATCAAGCGCATATCACGCGCAAGCCTTTGATCAAGAACATTCCTC
GCGCCTTGAAGACGTTCATTTCGCGCTCTCCCATTTCGCAGCCGCAGAAT
GTCCCACTCAGGCTTAACCGTTTGCACGGTGCCGACCACAGCCGTATGTC
TGTATTGTCACCCTCGCTTCGTAAGGAGTTTCGAAAGATAAGCTATCAGA
ATCCCCAGTCTTCTCACATTGTTGTCAACGTTGACTCATCTGCGTCGCCA
CAGTCTCCGAGGAAGAGGAATTCGAGGCGCCAAAGTATCCCACACCCACA
GCCTCAATTGCACCTCCAAACTCAAACTCAACCTCAACCGCAGCTGCTTC
TCCAGACCCGAGCGCAGCACAAGCCCACTTTGAAGCCTGTTCGCCTAGCT
GGTGATGATCACAATGACATTGTTCCTACACAAATTGTACCTTCGAGGCA
ATCCCCCCCATCGAGCTTGAACGAAAATCACGAGCACATCGCAATGGAAC
TCAAGAGCACGGCTTCCGTTTCATCCCGCAGCGTCCAAGAACAAAATCAA
ACAGTTCATCTTCCGGAAGAACAAGCAGTCCATGAGCAGCAATCCGACGC
ACCATCTAAACCAACTGAGCTTCCCCTCAACATATCGACATTGATTAATA
AGTATGACAAGAATAACTCTACGCCAGACAAATCGAACAACAACATCGAG
CGGCTCTCACTCATCCCCGAGGCTCAACACAAAGTCGCTACCATGCGAGC
TCTATTTGAAGCCGATCAGGCAGAACGGCAGCGTCTGTCATCGTTGAAGA
GCCCCCCGCGAAGCAATACTACGCCGTTCTTGAAACCCAAACCGTACAAC
GCTATATCTCAACCAAGTGTGGAAAGAACCTCTTTCTCACCGTTAAGTAC
AACCTCCCCATCCATTAGCACGTTACGAAACAACCCTGAACAGATTCCGA
AACGTCATGGAACCCGTTTTGTGAAACTCGTTGACAGTCCGAAGTCTCCT
ATTGATCATAAGGGCATCGGTACAGAAGGTTCTGTGATTTCTTCTGTGAC
GAAGACTCCAGACGATGATACAATTTTGGGCGACACAGATTTGGAGGAAG
AACGCATAGCTTTAGACCCTATATCTCGTGTACAGGAAGCTGATCACCGG
GATATCCCGGAAAGGATGAACTTGAGGGATCTCTTTGAGTCGCTCGAACT
GTCTCCGGATGAAAAGGAGACTACGGCTGTCAAGAGCCCCAAATCTAACA
AAAGCAGAGAACGTTCTTCAACCGTTGCAAAGCTCATCGCCAGATACGGG
GGAACTGATCAATCGACCGAGAAGGAGAATGGTCGTAGGTTGGAAACAGA
AAACGACGCTCCACGAAAGGAAAAGCGTACAGTTGAGGAAAAGGTGAACA
GATCGCTTGTTATGGACGAAGGGGATGAGATCCAGAAGGTGTACAAGACT
GAGGCGAAGGACAAAAAGAAACTTGGACGATCAGTAGACCAGATCCCGGA
ACGTCAGGGAGGGGTTGAAGCCATTCCCTGGGAAGCCCGTATCAAATCCT
TCAACGCAGAAGTAGAGGAAGCCGCGAGCATGGCATATATCAGAAAAGTT
ATGTCTCATGACGGAGAGAACGATCGCTTCAAGTCTTTCAGTGTTTATAG
TGGCACGGACCAAGACTCGCAGTTGAGGACAAGAAGTGAGGCGAGTGGCC
GTAGGTGGCGAAGGCGTAGTGCTCGAGCACAAAACAAGTCTTGGTTATCC
AGAAAAGCTAATGAACAAGTGCACAAAGTGAAGAAACGTGTTGGTACGAT
GAGAAATATTATATCTGCTGACGATTATTAG