Ggra9983.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9983.t1
Unique NameGgra9983.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length605
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:96510..99064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog314723.BH0249
Preferred namepcs
PFAMsCDP-OH_P_transf
Max annot lvl2|Bacteria
KEGG rclassRC00002,RC00017,RC02795
KEGG koko:K01004,ko:K17103
KEGG ReactionR01800,R05794
KEGG Pathwayko00260,ko00564,ko01100,ko01110,map00260,map00564,map01100,map01110
KEGG ModuleM00093
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006629,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016740,GO:0016772,GO:0016780,GO:0019637,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0050520,GO:0071704,GO:0090407,GO:1901576
Evalue6.4e-37
EggNOG OGsCOG1183@1|root,COG1183@2|Bacteria
EC2.7.8.24,2.7.8.8
Descriptionphosphatidylcholine synthase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9983Ggra9983Gracilaria gracilis GNS1m malegenetig00000213_pilon 96510..99064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9983.t1Ggra9983.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 96510..99064 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9983.t1.start1Ggra9983.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 96510..96512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9983.t1.CDS1Ggra9983.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 96510..97479 +
Ggra9983.t1.CDS2Ggra9983.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000213_pilon 98128..98175 +
Ggra9983.t1.CDS3Ggra9983.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000213_pilon 98268..99064 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9983.t1.exon1Ggra9983.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 96510..97479 +
Ggra9983.t1.exon2Ggra9983.t1.exon2Gracilaria gracilis GNS1m maleexontig00000213_pilon 98128..98175 +
Ggra9983.t1.exon3Ggra9983.t1.exon3Gracilaria gracilis GNS1m maleexontig00000213_pilon 98268..99064 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9983.t1.intron1Ggra9983.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000213_pilon 97480..98127 +
Ggra9983.t1.intron2Ggra9983.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000213_pilon 98176..98267 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9983.t1.stop1Ggra9983.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 99062..99064 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9983.t1 ID=Ggra9983.t1|Name=Ggra9983.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=605bp
MRRRITSQPSSPDPPAYPTVTRWASAARRPTSLSDSPTARDVSYSSVALR
HSNSSTDRRSTLTPSLSLPPPHTNLRPAAAQRTHSLHTSPPRESIQRQAT
LKRSDSLLQRARRVFSLPAGMRRRTREFAPPPDNLRRRPRTSSTNDRFDN
LAAADYIPRHRNSFSAAARRVTERYRRKESLPEDPRPTNAELAAAQERIS
SLENELELERVRSSRARRRVRELEQQTITCRHAIPAVESIIKSALAQFDA
KEAALRHTITRMDQEYAALLAEKKEAVRLLNAFVGRGTRSPPPSSFSSVS
DGSESVRERRAMSLDAIRRAKASGYCYCAVGCFCLLLFISASMEPRTGHR
TPRRSESGRGRRRAPGTYPWYQKVAAWMVHLFTASGLLVNMFSLLHAIFG
QTDFNLFAKLNWLAIFIDAVDGTFARAVDIKKVVPTYDGAMLDNIIDFQT
FSVLPALSIVVFQLVEGTIAQYAAAVAILLASAYQFCQTVAKTTDAFVGF
PSYWNIVVFYIFYLKPTTAVSLILIFGCAVLSFVPIHFIYPTRTKELFYV
NHIGAYLWSGLMIVPTMFPNSQYVKPALYVSFVYVIYYFALSIMLDVRRR
KAEA*
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spliced messenger RNA

>Ggra9983.t1 ID=Ggra9983.t1|Name=Ggra9983.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1815bp|location=Sequence derived from alignment at tig00000213_pilon:96510..99064+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGTCGCATCACCTCGCAGCCGTCTTCGCCAGACCCGCCCGCTTA
CCCCACCGTGACGCGCTGGGCATCCGCCGCGCGTCGCCCCACCTCACTGT
CCGACAGTCCAACCGCTCGCGATGTGTCGTACTCATCTGTCGCCTTGCGT
CACTCCAACTCCTCCACGGATAGGAGGAGTACACTAACACCCTCCCTCTC
TCTACCGCCCCCACACACCAATCTGCGCCCCGCCGCCGCCCAGCGCACCC
ACTCGCTACACACCAGCCCCCCGCGCGAGAGCATCCAGCGCCAAGCCACC
CTCAAACGCTCCGATTCGCTGCTGCAGCGCGCGCGCCGTGTGTTCAGTCT
TCCGGCTGGTATGAGAAGGCGCACACGCGAGTTTGCACCGCCACCCGATA
ACCTTCGGAGGCGTCCACGAACAAGCAGTACCAACGACCGCTTTGACAAT
CTCGCGGCCGCGGATTACATCCCGCGTCACCGCAACTCGTTCTCAGCCGC
CGCGCGGCGCGTCACAGAACGCTATCGCCGCAAAGAGTCGCTTCCGGAGG
ATCCGCGGCCCACAAATGCCGAATTGGCCGCCGCGCAGGAGCGCATCAGC
TCACTGGAGAACGAACTGGAACTGGAACGCGTGCGCTCGTCAAGGGCGCG
ACGTCGGGTGCGCGAATTGGAGCAGCAGACCATCACGTGCCGACATGCCA
TTCCCGCTGTGGAGAGCATCATAAAATCTGCACTGGCACAGTTTGATGCC
AAGGAGGCTGCTCTGCGCCATACCATCACCAGAATGGACCAGGAATATGC
TGCGCTGCTTGCGGAGAAGAAGGAGGCTGTGAGACTTTTGAATGCGTTCG
TTGGCAGAGGAACTCGTTCGCCACCACCGTCTTCTTTTTCTTCTGTGTCT
GATGGAAGCGAGAGCGTGAGAGAGCGCAGGGCTATGAGTTTGGATGCAAT
TCGGAGGGCCAAGGCTTCTGGGTACTGCTATTGCGCCGTTGGTTGCTTCT
GCCTTTTGCTTTTCATTTCAGCCTCTATGGAACCGCGCACAGGGCACCGT
ACACCGCGCAGATCAGAATCGGGGCGCGGTCGTCGCCGCGCTCCAGGCAC
ATACCCATGGTATCAAAAGGTTGCCGCTTGGATGGTACATTTATTCACTG
CGTCGGGCTTGCTGGTCAATATGTTCTCGTTGCTGCATGCCATATTCGGC
CAAACTGATTTCAATCTGTTTGCCAAGTTGAACTGGTTGGCTATCTTCAT
CGATGCTGTGGACGGAACTTTTGCAAGAGCTGTTGACATTAAGAAAGTGG
TTCCCACTTATGACGGCGCCATGCTTGATAACATTATTGATTTCCAAACC
TTTTCGGTTTTGCCCGCGTTATCCATAGTAGTGTTTCAACTAGTGGAGGG
AACGATCGCACAATACGCTGCCGCCGTGGCTATCCTTCTGGCCTCAGCGT
ACCAGTTCTGCCAAACTGTTGCAAAAACGACTGACGCGTTTGTGGGTTTT
CCTAGTTATTGGAACATTGTGGTGTTCTACATCTTTTACCTCAAGCCGAC
GACCGCCGTATCGCTGATTCTCATATTCGGTTGCGCTGTGTTGTCGTTCG
TTCCCATTCACTTCATCTACCCAACGCGCACGAAGGAGTTGTTCTATGTG
AACCACATCGGGGCGTACCTTTGGTCCGGGTTGATGATTGTGCCAACCAT
GTTCCCTAACTCGCAGTACGTGAAGCCGGCTCTATATGTATCGTTTGTGT
ACGTGATCTATTACTTTGCTCTTTCGATTATGCTCGATGTTCGCCGGCGG
AAAGCCGAAGCATGA
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protein sequence of Ggra9983.t1

>Ggra9983.t1 ID=Ggra9983.t1|Name=Ggra9983.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=605bp
MRRRITSQPSSPDPPAYPTVTRWASAARRPTSLSDSPTARDVSYSSVALR
HSNSSTDRRSTLTPSLSLPPPHTNLRPAAAQRTHSLHTSPPRESIQRQAT
LKRSDSLLQRARRVFSLPAGMRRRTREFAPPPDNLRRRPRTSSTNDRFDN
LAAADYIPRHRNSFSAAARRVTERYRRKESLPEDPRPTNAELAAAQERIS
SLENELELERVRSSRARRRVRELEQQTITCRHAIPAVESIIKSALAQFDA
KEAALRHTITRMDQEYAALLAEKKEAVRLLNAFVGRGTRSPPPSSFSSVS
DGSESVRERRAMSLDAIRRAKASGYCYCAVGCFCLLLFISASMEPRTGHR
TPRRSESGRGRRRAPGTYPWYQKVAAWMVHLFTASGLLVNMFSLLHAIFG
QTDFNLFAKLNWLAIFIDAVDGTFARAVDIKKVVPTYDGAMLDNIIDFQT
FSVLPALSIVVFQLVEGTIAQYAAAVAILLASAYQFCQTVAKTTDAFVGF
PSYWNIVVFYIFYLKPTTAVSLILIFGCAVLSFVPIHFIYPTRTKELFYV
NHIGAYLWSGLMIVPTMFPNSQYVKPALYVSFVYVIYYFALSIMLDVRRR
KAEA*
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mRNA from alignment at tig00000213_pilon:96510..99064+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9983.t1 ID=Ggra9983.t1|Name=Ggra9983.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2555bp|location=Sequence derived from alignment at tig00000213_pilon:96510..99064+ (Gracilaria gracilis GNS1m male)
ATGCGCCGTCGCATCACCTCGCAGCCGTCTTCGCCAGACCCGCCCGCTTA
CCCCACCGTGACGCGCTGGGCATCCGCCGCGCGTCGCCCCACCTCACTGT
CCGACAGTCCAACCGCTCGCGATGTGTCGTACTCATCTGTCGCCTTGCGT
CACTCCAACTCCTCCACGGATAGGAGGAGTACACTAACACCCTCCCTCTC
TCTACCGCCCCCACACACCAATCTGCGCCCCGCCGCCGCCCAGCGCACCC
ACTCGCTACACACCAGCCCCCCGCGCGAGAGCATCCAGCGCCAAGCCACC
CTCAAACGCTCCGATTCGCTGCTGCAGCGCGCGCGCCGTGTGTTCAGTCT
TCCGGCTGGTATGAGAAGGCGCACACGCGAGTTTGCACCGCCACCCGATA
ACCTTCGGAGGCGTCCACGAACAAGCAGTACCAACGACCGCTTTGACAAT
CTCGCGGCCGCGGATTACATCCCGCGTCACCGCAACTCGTTCTCAGCCGC
CGCGCGGCGCGTCACAGAACGCTATCGCCGCAAAGAGTCGCTTCCGGAGG
ATCCGCGGCCCACAAATGCCGAATTGGCCGCCGCGCAGGAGCGCATCAGC
TCACTGGAGAACGAACTGGAACTGGAACGCGTGCGCTCGTCAAGGGCGCG
ACGTCGGGTGCGCGAATTGGAGCAGCAGACCATCACGTGCCGACATGCCA
TTCCCGCTGTGGAGAGCATCATAAAATCTGCACTGGCACAGTTTGATGCC
AAGGAGGCTGCTCTGCGCCATACCATCACCAGAATGGACCAGGAATATGC
TGCGCTGCTTGCGGAGAAGAAGGAGGCTGTGAGACTTTTGAATGCGTTCG
TTGGCAGAGGAACTCGTTCGCCACCACCGTCTTCTTTTTCTTCTGTGTCT
GATGGAAGCGAGAGCGTGAGAGAGCGCAGGGCTATGAGTTTGGATGCAAT
TCGGAGGGCCAAGGCTTCTGGTGCGGCAGAAGCATGACGTGCACATCAAG
CTGGAACAGGCTAAATACTGCCAATTTGCATGCTTGGTCAGGTGGTTCAT
TGGGTACCGTGCCGCCTTGTACCCAATGGGCGGGGAGGACCGTGCTGTTG
TGAAACGAAAGCCCCTATCTATCACTTATATGATGTGTATTGAAGAAGTG
AATGTTCCGGGTCACTCCTGAGAACCTTTTTTTTGTAGGATGCGCCGTGC
ATATTAAACAACATGTGCACCGGGCATTTGCCCCAGTTTTCACATCAAAT
TGAATCAAGTGAATTTGTTTTGATTTGTTTTGAATTCCTTACATTGATAA
CTTACGTGTACACGGTGAGTGCTAATACGCCTCTGTTTAGCGCGCGTGTT
CTCATGTCGAAGAACATCGTAGATAGCCTTACCAGAGGTGCTCGCTCGTC
GGCTACCGTGTAGATATCTACTCTGTACAATGCCACTCGTGCACACTTTC
AACTCGAAAACGCGCCAAGTTCAAGCGTGAACCTCAGCCAATTCGAATCT
CGCACAAATCGCCCCTCATCGTTTGCCCGTCGTATTCCACTTGGCTGCTA
GAAACGACTGTGAATGCTCTGCGCGTAATCGAGTCTATACGCCTTCAGCT
ACTTGTTGTTCACCCAAGGGTACTGCTATTGCGCCGTTGGTTGCTTCTGC
CTTTTGCTTTTCATTTGTGGGTGCTTGTACACTTCGTCATGGAGCTTCGC
AGTCGAACGATCGGTAAATCTGACGCCTCTTCCACCGCCACCTCTTCCGA
CAAAACAGCAGCCTCTATGGAACCGCGCACAGGGCACCGTACACCGCGCA
GATCAGAATCGGGGCGCGGTCGTCGCCGCGCTCCAGGCACATACCCATGG
TATCAAAAGGTTGCCGCTTGGATGGTACATTTATTCACTGCGTCGGGCTT
GCTGGTCAATATGTTCTCGTTGCTGCATGCCATATTCGGCCAAACTGATT
TCAATCTGTTTGCCAAGTTGAACTGGTTGGCTATCTTCATCGATGCTGTG
GACGGAACTTTTGCAAGAGCTGTTGACATTAAGAAAGTGGTTCCCACTTA
TGACGGCGCCATGCTTGATAACATTATTGATTTCCAAACCTTTTCGGTTT
TGCCCGCGTTATCCATAGTAGTGTTTCAACTAGTGGAGGGAACGATCGCA
CAATACGCTGCCGCCGTGGCTATCCTTCTGGCCTCAGCGTACCAGTTCTG
CCAAACTGTTGCAAAAACGACTGACGCGTTTGTGGGTTTTCCTAGTTATT
GGAACATTGTGGTGTTCTACATCTTTTACCTCAAGCCGACGACCGCCGTA
TCGCTGATTCTCATATTCGGTTGCGCTGTGTTGTCGTTCGTTCCCATTCA
CTTCATCTACCCAACGCGCACGAAGGAGTTGTTCTATGTGAACCACATCG
GGGCGTACCTTTGGTCCGGGTTGATGATTGTGCCAACCATGTTCCCTAAC
TCGCAGTACGTGAAGCCGGCTCTATATGTATCGTTTGTGTACGTGATCTA
TTACTTTGCTCTTTCGATTATGCTCGATGTTCGCCGGCGGAAAGCCGAAG
CATGA
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Coding sequence (CDS) from alignment at tig00000213_pilon:96510..99064+

>Ggra9983.t1 ID=Ggra9983.t1|Name=Ggra9983.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1815bp|location=Sequence derived from alignment at tig00000213_pilon:96510..99064+ (Gracilaria gracilis GNS1m male)
ATGCGCCGTCGCATCACCTCGCAGCCGTCTTCGCCAGACCCGCCCGCTTA
CCCCACCGTGACGCGCTGGGCATCCGCCGCGCGTCGCCCCACCTCACTGT
CCGACAGTCCAACCGCTCGCGATGTGTCGTACTCATCTGTCGCCTTGCGT
CACTCCAACTCCTCCACGGATAGGAGGAGTACACTAACACCCTCCCTCTC
TCTACCGCCCCCACACACCAATCTGCGCCCCGCCGCCGCCCAGCGCACCC
ACTCGCTACACACCAGCCCCCCGCGCGAGAGCATCCAGCGCCAAGCCACC
CTCAAACGCTCCGATTCGCTGCTGCAGCGCGCGCGCCGTGTGTTCAGTCT
TCCGGCTGGTATGAGAAGGCGCACACGCGAGTTTGCACCGCCACCCGATA
ACCTTCGGAGGCGTCCACGAACAAGCAGTACCAACGACCGCTTTGACAAT
CTCGCGGCCGCGGATTACATCCCGCGTCACCGCAACTCGTTCTCAGCCGC
CGCGCGGCGCGTCACAGAACGCTATCGCCGCAAAGAGTCGCTTCCGGAGG
ATCCGCGGCCCACAAATGCCGAATTGGCCGCCGCGCAGGAGCGCATCAGC
TCACTGGAGAACGAACTGGAACTGGAACGCGTGCGCTCGTCAAGGGCGCG
ACGTCGGGTGCGCGAATTGGAGCAGCAGACCATCACGTGCCGACATGCCA
TTCCCGCTGTGGAGAGCATCATAAAATCTGCACTGGCACAGTTTGATGCC
AAGGAGGCTGCTCTGCGCCATACCATCACCAGAATGGACCAGGAATATGC
TGCGCTGCTTGCGGAGAAGAAGGAGGCTGTGAGACTTTTGAATGCGTTCG
TTGGCAGAGGAACTCGTTCGCCACCACCGTCTTCTTTTTCTTCTGTGTCT
GATGGAAGCGAGAGCGTGAGAGAGCGCAGGGCTATGAGTTTGGATGCAAT
TCGGAGGGCCAAGGCTTCTGGGTACTGCTATTGCGCCGTTGGTTGCTTCT
GCCTTTTGCTTTTCATTTCAGCCTCTATGGAACCGCGCACAGGGCACCGT
ACACCGCGCAGATCAGAATCGGGGCGCGGTCGTCGCCGCGCTCCAGGCAC
ATACCCATGGTATCAAAAGGTTGCCGCTTGGATGGTACATTTATTCACTG
CGTCGGGCTTGCTGGTCAATATGTTCTCGTTGCTGCATGCCATATTCGGC
CAAACTGATTTCAATCTGTTTGCCAAGTTGAACTGGTTGGCTATCTTCAT
CGATGCTGTGGACGGAACTTTTGCAAGAGCTGTTGACATTAAGAAAGTGG
TTCCCACTTATGACGGCGCCATGCTTGATAACATTATTGATTTCCAAACC
TTTTCGGTTTTGCCCGCGTTATCCATAGTAGTGTTTCAACTAGTGGAGGG
AACGATCGCACAATACGCTGCCGCCGTGGCTATCCTTCTGGCCTCAGCGT
ACCAGTTCTGCCAAACTGTTGCAAAAACGACTGACGCGTTTGTGGGTTTT
CCTAGTTATTGGAACATTGTGGTGTTCTACATCTTTTACCTCAAGCCGAC
GACCGCCGTATCGCTGATTCTCATATTCGGTTGCGCTGTGTTGTCGTTCG
TTCCCATTCACTTCATCTACCCAACGCGCACGAAGGAGTTGTTCTATGTG
AACCACATCGGGGCGTACCTTTGGTCCGGGTTGATGATTGTGCCAACCAT
GTTCCCTAACTCGCAGTACGTGAAGCCGGCTCTATATGTATCGTTTGTGT
ACGTGATCTATTACTTTGCTCTTTCGATTATGCTCGATGTTCGCCGGCGG
AAAGCCGAAGCATGA
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