Ggra997.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra997.t1
Unique NameGgra997.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:103012..104151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28583.AMAG_03858T0
Max annot lvl33154|Opisthokonta
Evalue1.23e-06
EggNOG OGs2E64A@1|root,2SCVP@2759|Eukaryota,3ABD2@33154|Opisthokonta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra997Ggra997Gracilaria gracilis GNS1m malegenetig00000027_pilon 103012..104151 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra997.t1.stop1Ggra997.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 103012..103014 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra997.t1.CDS1Ggra997.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 103012..104151 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra997.t1.exon1Ggra997.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 103012..104151 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra997.t1.start1Ggra997.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 104149..104151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra997.t1Ggra997.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 103012..104151 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra997.t1 ID=Ggra997.t1|Name=Ggra997.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=380bp
MTSFWLITTSALVLALHIRPTQSHQTIAYPFPFAKYSKCSRNKNCEDTPC
PSTYLRGDVNANNPAIIVSRGDTFEIRINRNNHDYGFSRYALISIEDRFD
WDKHEQGTFLYMCDDVNETACEAWNWNRDCYFDRSGRYYRHIIRAPSHAP
DGVYVLGWAWFGGNFEDFFDCTYIEIRGGELSRSHTPYFDASNSKTGDDN
KCTATSTEVGTCTYDKCKRKGGSIQLGLRTPSAFDGRAPSRIRQSFLTPY
VRPRATVAVKGIAIVDADNPSDVKYWSGDYMEGIGEAHICLKAFKPAITC
VTEGDVGYVHFFKDGWTYEYDSETPFDMENSDFASGRLDVLDFGYERTHF
SVGCMAKGRDESESWKTISVSTVFDDDSC*
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spliced messenger RNA

>Ggra997.t1 ID=Ggra997.t1|Name=Ggra997.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000027_pilon:103012..104151- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCGTTCTGGTTGATAACTACCAGCGCACTTGTTCTTGCTCTGCA
TATCAGACCAACTCAAAGTCATCAGACAATTGCGTACCCATTCCCGTTCG
CTAAGTACTCCAAATGCTCTAGAAACAAGAACTGCGAAGACACGCCGTGT
CCTTCAACTTACCTTCGCGGTGATGTAAACGCCAACAACCCTGCTATCAT
TGTGTCTCGTGGCGATACCTTTGAAATTCGAATCAACCGAAACAATCACG
ACTATGGATTCTCTCGGTACGCTCTAATCTCCATTGAGGATCGATTCGAC
TGGGATAAGCATGAGCAGGGTACATTCTTGTACATGTGCGACGATGTGAA
TGAAACGGCTTGCGAGGCATGGAATTGGAATCGAGATTGCTACTTTGATC
GCTCAGGCCGCTACTACAGACACATTATTCGTGCGCCTTCTCATGCTCCT
GATGGCGTGTATGTGCTGGGATGGGCTTGGTTTGGCGGAAACTTTGAAGA
CTTTTTCGACTGCACCTATATTGAGATTCGTGGAGGAGAGCTTTCTCGAT
CACACACTCCGTACTTTGATGCTTCCAACTCGAAGACGGGCGACGATAAC
AAATGTACAGCTACATCGACAGAGGTTGGCACATGTACTTATGACAAGTG
CAAACGGAAGGGAGGATCGATCCAGTTGGGGCTGAGAACGCCTTCTGCGT
TTGATGGAAGGGCACCAAGCCGCATCAGACAGTCTTTCCTGACGCCATAC
GTTCGGCCGAGAGCGACTGTAGCCGTGAAAGGTATTGCAATTGTGGACGC
AGATAATCCATCCGATGTGAAGTATTGGAGCGGGGATTATATGGAGGGTA
TTGGCGAAGCACACATCTGTCTAAAAGCATTCAAGCCGGCCATTACGTGT
GTGACGGAGGGCGATGTGGGATATGTGCACTTCTTCAAGGATGGTTGGAC
GTATGAATACGATTCTGAAACGCCATTCGACATGGAAAACTCTGACTTTG
CAAGTGGGCGACTTGACGTGCTGGACTTTGGGTATGAGAGGACCCATTTC
TCGGTTGGCTGCATGGCGAAGGGAAGGGACGAGTCCGAGTCGTGGAAGAC
CATCTCTGTGAGCACGGTGTTTGACGACGACTCTTGTTAA
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protein sequence of Ggra997.t1

>Ggra997.t1 ID=Ggra997.t1|Name=Ggra997.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=380bp
MTSFWLITTSALVLALHIRPTQSHQTIAYPFPFAKYSKCSRNKNCEDTPC
PSTYLRGDVNANNPAIIVSRGDTFEIRINRNNHDYGFSRYALISIEDRFD
WDKHEQGTFLYMCDDVNETACEAWNWNRDCYFDRSGRYYRHIIRAPSHAP
DGVYVLGWAWFGGNFEDFFDCTYIEIRGGELSRSHTPYFDASNSKTGDDN
KCTATSTEVGTCTYDKCKRKGGSIQLGLRTPSAFDGRAPSRIRQSFLTPY
VRPRATVAVKGIAIVDADNPSDVKYWSGDYMEGIGEAHICLKAFKPAITC
VTEGDVGYVHFFKDGWTYEYDSETPFDMENSDFASGRLDVLDFGYERTHF
SVGCMAKGRDESESWKTISVSTVFDDDSC*
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mRNA from alignment at tig00000027_pilon:103012..104151-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra997.t1 ID=Ggra997.t1|Name=Ggra997.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000027_pilon:103012..104151- (Gracilaria gracilis GNS1m male)
ATGACATCGTTCTGGTTGATAACTACCAGCGCACTTGTTCTTGCTCTGCA
TATCAGACCAACTCAAAGTCATCAGACAATTGCGTACCCATTCCCGTTCG
CTAAGTACTCCAAATGCTCTAGAAACAAGAACTGCGAAGACACGCCGTGT
CCTTCAACTTACCTTCGCGGTGATGTAAACGCCAACAACCCTGCTATCAT
TGTGTCTCGTGGCGATACCTTTGAAATTCGAATCAACCGAAACAATCACG
ACTATGGATTCTCTCGGTACGCTCTAATCTCCATTGAGGATCGATTCGAC
TGGGATAAGCATGAGCAGGGTACATTCTTGTACATGTGCGACGATGTGAA
TGAAACGGCTTGCGAGGCATGGAATTGGAATCGAGATTGCTACTTTGATC
GCTCAGGCCGCTACTACAGACACATTATTCGTGCGCCTTCTCATGCTCCT
GATGGCGTGTATGTGCTGGGATGGGCTTGGTTTGGCGGAAACTTTGAAGA
CTTTTTCGACTGCACCTATATTGAGATTCGTGGAGGAGAGCTTTCTCGAT
CACACACTCCGTACTTTGATGCTTCCAACTCGAAGACGGGCGACGATAAC
AAATGTACAGCTACATCGACAGAGGTTGGCACATGTACTTATGACAAGTG
CAAACGGAAGGGAGGATCGATCCAGTTGGGGCTGAGAACGCCTTCTGCGT
TTGATGGAAGGGCACCAAGCCGCATCAGACAGTCTTTCCTGACGCCATAC
GTTCGGCCGAGAGCGACTGTAGCCGTGAAAGGTATTGCAATTGTGGACGC
AGATAATCCATCCGATGTGAAGTATTGGAGCGGGGATTATATGGAGGGTA
TTGGCGAAGCACACATCTGTCTAAAAGCATTCAAGCCGGCCATTACGTGT
GTGACGGAGGGCGATGTGGGATATGTGCACTTCTTCAAGGATGGTTGGAC
GTATGAATACGATTCTGAAACGCCATTCGACATGGAAAACTCTGACTTTG
CAAGTGGGCGACTTGACGTGCTGGACTTTGGGTATGAGAGGACCCATTTC
TCGGTTGGCTGCATGGCGAAGGGAAGGGACGAGTCCGAGTCGTGGAAGAC
CATCTCTGTGAGCACGGTGTTTGACGACGACTCTTGTTAA
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Coding sequence (CDS) from alignment at tig00000027_pilon:103012..104151-

>Ggra997.t1 ID=Ggra997.t1|Name=Ggra997.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1140bp|location=Sequence derived from alignment at tig00000027_pilon:103012..104151- (Gracilaria gracilis GNS1m male)
ATGACATCGTTCTGGTTGATAACTACCAGCGCACTTGTTCTTGCTCTGCA
TATCAGACCAACTCAAAGTCATCAGACAATTGCGTACCCATTCCCGTTCG
CTAAGTACTCCAAATGCTCTAGAAACAAGAACTGCGAAGACACGCCGTGT
CCTTCAACTTACCTTCGCGGTGATGTAAACGCCAACAACCCTGCTATCAT
TGTGTCTCGTGGCGATACCTTTGAAATTCGAATCAACCGAAACAATCACG
ACTATGGATTCTCTCGGTACGCTCTAATCTCCATTGAGGATCGATTCGAC
TGGGATAAGCATGAGCAGGGTACATTCTTGTACATGTGCGACGATGTGAA
TGAAACGGCTTGCGAGGCATGGAATTGGAATCGAGATTGCTACTTTGATC
GCTCAGGCCGCTACTACAGACACATTATTCGTGCGCCTTCTCATGCTCCT
GATGGCGTGTATGTGCTGGGATGGGCTTGGTTTGGCGGAAACTTTGAAGA
CTTTTTCGACTGCACCTATATTGAGATTCGTGGAGGAGAGCTTTCTCGAT
CACACACTCCGTACTTTGATGCTTCCAACTCGAAGACGGGCGACGATAAC
AAATGTACAGCTACATCGACAGAGGTTGGCACATGTACTTATGACAAGTG
CAAACGGAAGGGAGGATCGATCCAGTTGGGGCTGAGAACGCCTTCTGCGT
TTGATGGAAGGGCACCAAGCCGCATCAGACAGTCTTTCCTGACGCCATAC
GTTCGGCCGAGAGCGACTGTAGCCGTGAAAGGTATTGCAATTGTGGACGC
AGATAATCCATCCGATGTGAAGTATTGGAGCGGGGATTATATGGAGGGTA
TTGGCGAAGCACACATCTGTCTAAAAGCATTCAAGCCGGCCATTACGTGT
GTGACGGAGGGCGATGTGGGATATGTGCACTTCTTCAAGGATGGTTGGAC
GTATGAATACGATTCTGAAACGCCATTCGACATGGAAAACTCTGACTTTG
CAAGTGGGCGACTTGACGTGCTGGACTTTGGGTATGAGAGGACCCATTTC
TCGGTTGGCTGCATGGCGAAGGGAAGGGACGAGTCCGAGTCGTGGAAGAC
CATCTCTGTGAGCACGGTGTTTGACGACGACTCTTGTTAA
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