Ggra996.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra996.t1
Unique Name	Ggra996.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	494

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000027_pilon	contig	tig00000027_pilon:100706..102187 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra996	Ggra996	Gracilaria gracilis GNS1m male	gene	tig00000027_pilon 100706..102187 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra996.t1.start1	Ggra996.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000027_pilon 100706..100708 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra996.t1.CDS1	Ggra996.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000027_pilon 100706..102187 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra996.t1.exon1	Ggra996.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000027_pilon 100706..102187 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra996.t1.stop1	Ggra996.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000027_pilon 102185..102187 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra996.t1	Ggra996.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000027_pilon 100706..102187 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000027_pilon:100706..102187+
coding sequence from alignment at tig00000027_pilon:100706..102187+

mRNA sequence

>Ggra996.t1 ID=Ggra996.t1|Name=Ggra996.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=494bp
MQVDHKVPATYNRPAMAVGGWILKCGTLYPTHQLREHVQTLARAEPDSAT
TAVTFNDGGEQTTVNLCVGAQQLARLLPGLLSPDHRLKLRIERDEMDSFL
STLHSLLLLNPLDVQRFPPIFLALSCKYKLYPLYFAQLELLMDSACDYNL
RLSAFLNQYDYVLQMLGDRLPRLFWGHLARRIVLECEHALRLSAAVPMLC
GDFPFRRADGPPDYRNVWQLLHELDLVQVMFNFAAGLSASSFPDVLHFVF
TKCVDLTQADVHLMQDRYVQQLLALDWRHLRAHLSRVIQLAKAWPQRLRA
ILKQSLCRQPMKNVDVFSPRICFNVQLATSQKQAHVVKEHLGPAFKQFTF
SFKALVENDRFFLDLTLWRQRGSGRAVATDQHGKIHMKQGDQIGVQVSAL
ECDCLCEMNRFTTNLSKPKHWPIYMPDRDNDNELFFTERVPKKRIVLMKS
IEDEWLQFHSIGCSLVVSVSLRWIEPARGSLYLKQVPDPDLVS*

spliced messenger RNA

>Ggra996.t1 ID=Ggra996.t1|Name=Ggra996.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000027_pilon:100706..102187+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGTCGATCACAAAGTGCCCGCCACGTACAACCGCCCCGCCATGGC
CGTGGGCGGCTGGATCCTCAAATGCGGCACACTCTACCCGACGCACCAGC
TGCGCGAGCACGTGCAAACGCTGGCGCGCGCCGAACCCGACTCCGCAACC
ACCGCCGTCACCTTCAACGACGGCGGCGAGCAAACCACCGTCAACCTGTG
TGTGGGTGCTCAGCAGCTCGCGCGCCTGCTGCCGGGGCTGCTATCGCCCG
ACCACCGCCTCAAGCTGCGCATCGAGCGCGACGAGATGGACAGCTTCCTC
AGCACGTTGCACAGCTTGCTGCTGCTCAACCCGCTGGACGTGCAGCGCTT
TCCGCCCATCTTCCTGGCGCTCTCCTGCAAGTACAAGCTGTACCCGCTCT
ACTTTGCGCAGCTGGAGCTGCTCATGGACAGCGCCTGCGACTACAACTTG
CGCCTGTCCGCCTTTCTCAACCAGTACGACTACGTGCTGCAGATGCTGGG
CGACCGCCTGCCGCGCCTGTTCTGGGGCCATCTGGCGCGCCGCATCGTGC
TCGAGTGCGAGCACGCGCTGCGCCTCAGCGCCGCCGTGCCCATGCTGTGC
GGCGACTTTCCGTTCCGCCGCGCCGACGGGCCGCCCGACTACCGCAACGT
GTGGCAGCTGCTGCACGAGCTGGACCTCGTGCAGGTGATGTTCAACTTCG
CCGCCGGCCTCAGCGCCAGCTCCTTTCCGGACGTGCTGCACTTTGTGTTC
ACCAAGTGCGTCGACCTCACGCAGGCCGACGTGCACTTGATGCAGGACCG
CTACGTGCAGCAGCTGCTGGCGCTGGATTGGCGCCACCTGCGCGCACACC
TCTCCCGTGTCATCCAGCTCGCAAAGGCGTGGCCCCAACGTCTCAGGGCC
ATCCTCAAACAGTCGCTATGCCGCCAGCCCATGAAGAACGTGGACGTGTT
CTCCCCGCGCATCTGCTTCAACGTGCAGCTCGCCACAAGCCAAAAGCAAG
CGCACGTGGTCAAGGAGCACCTTGGCCCGGCGTTCAAGCAGTTCACGTTT
TCGTTCAAGGCGCTCGTGGAGAACGACCGCTTCTTCTTGGACCTCACGCT
GTGGCGGCAGCGAGGCAGCGGACGCGCAGTGGCCACCGACCAGCACGGCA
AGATACACATGAAACAAGGCGACCAAATCGGCGTTCAGGTGAGCGCGCTC
GAGTGTGATTGCCTTTGTGAGATGAACAGGTTCACCACGAACCTTTCCAA
ACCAAAGCACTGGCCCATATACATGCCTGACCGAGACAACGACAACGAGC
TGTTTTTCACCGAGCGGGTTCCAAAGAAGAGGATCGTGCTGATGAAAAGC
ATTGAGGACGAATGGTTGCAGTTCCACTCCATTGGTTGTAGCCTGGTGGT
GAGCGTCTCGCTACGCTGGATAGAGCCAGCGAGAGGATCCCTGTATCTGA
AGCAAGTGCCCGACCCTGACTTGGTTTCGTAA

protein sequence of Ggra996.t1

>Ggra996.t1 ID=Ggra996.t1|Name=Ggra996.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=494bp
MQVDHKVPATYNRPAMAVGGWILKCGTLYPTHQLREHVQTLARAEPDSAT
TAVTFNDGGEQTTVNLCVGAQQLARLLPGLLSPDHRLKLRIERDEMDSFL
STLHSLLLLNPLDVQRFPPIFLALSCKYKLYPLYFAQLELLMDSACDYNL
RLSAFLNQYDYVLQMLGDRLPRLFWGHLARRIVLECEHALRLSAAVPMLC
GDFPFRRADGPPDYRNVWQLLHELDLVQVMFNFAAGLSASSFPDVLHFVF
TKCVDLTQADVHLMQDRYVQQLLALDWRHLRAHLSRVIQLAKAWPQRLRA
ILKQSLCRQPMKNVDVFSPRICFNVQLATSQKQAHVVKEHLGPAFKQFTF
SFKALVENDRFFLDLTLWRQRGSGRAVATDQHGKIHMKQGDQIGVQVSAL
ECDCLCEMNRFTTNLSKPKHWPIYMPDRDNDNELFFTERVPKKRIVLMKS
IEDEWLQFHSIGCSLVVSVSLRWIEPARGSLYLKQVPDPDLVS*

mRNA from alignment at tig00000027_pilon:100706..102187+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra996.t1 ID=Ggra996.t1|Name=Ggra996.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000027_pilon:100706..102187+ (Gracilaria gracilis GNS1m male)
ATGCAAGTCGATCACAAAGTGCCCGCCACGTACAACCGCCCCGCCATGGC
CGTGGGCGGCTGGATCCTCAAATGCGGCACACTCTACCCGACGCACCAGC
TGCGCGAGCACGTGCAAACGCTGGCGCGCGCCGAACCCGACTCCGCAACC
ACCGCCGTCACCTTCAACGACGGCGGCGAGCAAACCACCGTCAACCTGTG
TGTGGGTGCTCAGCAGCTCGCGCGCCTGCTGCCGGGGCTGCTATCGCCCG
ACCACCGCCTCAAGCTGCGCATCGAGCGCGACGAGATGGACAGCTTCCTC
AGCACGTTGCACAGCTTGCTGCTGCTCAACCCGCTGGACGTGCAGCGCTT
TCCGCCCATCTTCCTGGCGCTCTCCTGCAAGTACAAGCTGTACCCGCTCT
ACTTTGCGCAGCTGGAGCTGCTCATGGACAGCGCCTGCGACTACAACTTG
CGCCTGTCCGCCTTTCTCAACCAGTACGACTACGTGCTGCAGATGCTGGG
CGACCGCCTGCCGCGCCTGTTCTGGGGCCATCTGGCGCGCCGCATCGTGC
TCGAGTGCGAGCACGCGCTGCGCCTCAGCGCCGCCGTGCCCATGCTGTGC
GGCGACTTTCCGTTCCGCCGCGCCGACGGGCCGCCCGACTACCGCAACGT
GTGGCAGCTGCTGCACGAGCTGGACCTCGTGCAGGTGATGTTCAACTTCG
CCGCCGGCCTCAGCGCCAGCTCCTTTCCGGACGTGCTGCACTTTGTGTTC
ACCAAGTGCGTCGACCTCACGCAGGCCGACGTGCACTTGATGCAGGACCG
CTACGTGCAGCAGCTGCTGGCGCTGGATTGGCGCCACCTGCGCGCACACC
TCTCCCGTGTCATCCAGCTCGCAAAGGCGTGGCCCCAACGTCTCAGGGCC
ATCCTCAAACAGTCGCTATGCCGCCAGCCCATGAAGAACGTGGACGTGTT
CTCCCCGCGCATCTGCTTCAACGTGCAGCTCGCCACAAGCCAAAAGCAAG
CGCACGTGGTCAAGGAGCACCTTGGCCCGGCGTTCAAGCAGTTCACGTTT
TCGTTCAAGGCGCTCGTGGAGAACGACCGCTTCTTCTTGGACCTCACGCT
GTGGCGGCAGCGAGGCAGCGGACGCGCAGTGGCCACCGACCAGCACGGCA
AGATACACATGAAACAAGGCGACCAAATCGGCGTTCAGGTGAGCGCGCTC
GAGTGTGATTGCCTTTGTGAGATGAACAGGTTCACCACGAACCTTTCCAA
ACCAAAGCACTGGCCCATATACATGCCTGACCGAGACAACGACAACGAGC
TGTTTTTCACCGAGCGGGTTCCAAAGAAGAGGATCGTGCTGATGAAAAGC
ATTGAGGACGAATGGTTGCAGTTCCACTCCATTGGTTGTAGCCTGGTGGT
GAGCGTCTCGCTACGCTGGATAGAGCCAGCGAGAGGATCCCTGTATCTGA
AGCAAGTGCCCGACCCTGACTTGGTTTCGTAA

Coding sequence (CDS) from alignment at tig00000027_pilon:100706..102187+

>Ggra996.t1 ID=Ggra996.t1|Name=Ggra996.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1482bp|location=Sequence derived from alignment at tig00000027_pilon:100706..102187+ (Gracilaria gracilis GNS1m male)
ATGCAAGTCGATCACAAAGTGCCCGCCACGTACAACCGCCCCGCCATGGC
CGTGGGCGGCTGGATCCTCAAATGCGGCACACTCTACCCGACGCACCAGC
TGCGCGAGCACGTGCAAACGCTGGCGCGCGCCGAACCCGACTCCGCAACC
ACCGCCGTCACCTTCAACGACGGCGGCGAGCAAACCACCGTCAACCTGTG
TGTGGGTGCTCAGCAGCTCGCGCGCCTGCTGCCGGGGCTGCTATCGCCCG
ACCACCGCCTCAAGCTGCGCATCGAGCGCGACGAGATGGACAGCTTCCTC
AGCACGTTGCACAGCTTGCTGCTGCTCAACCCGCTGGACGTGCAGCGCTT
TCCGCCCATCTTCCTGGCGCTCTCCTGCAAGTACAAGCTGTACCCGCTCT
ACTTTGCGCAGCTGGAGCTGCTCATGGACAGCGCCTGCGACTACAACTTG
CGCCTGTCCGCCTTTCTCAACCAGTACGACTACGTGCTGCAGATGCTGGG
CGACCGCCTGCCGCGCCTGTTCTGGGGCCATCTGGCGCGCCGCATCGTGC
TCGAGTGCGAGCACGCGCTGCGCCTCAGCGCCGCCGTGCCCATGCTGTGC
GGCGACTTTCCGTTCCGCCGCGCCGACGGGCCGCCCGACTACCGCAACGT
GTGGCAGCTGCTGCACGAGCTGGACCTCGTGCAGGTGATGTTCAACTTCG
CCGCCGGCCTCAGCGCCAGCTCCTTTCCGGACGTGCTGCACTTTGTGTTC
ACCAAGTGCGTCGACCTCACGCAGGCCGACGTGCACTTGATGCAGGACCG
CTACGTGCAGCAGCTGCTGGCGCTGGATTGGCGCCACCTGCGCGCACACC
TCTCCCGTGTCATCCAGCTCGCAAAGGCGTGGCCCCAACGTCTCAGGGCC
ATCCTCAAACAGTCGCTATGCCGCCAGCCCATGAAGAACGTGGACGTGTT
CTCCCCGCGCATCTGCTTCAACGTGCAGCTCGCCACAAGCCAAAAGCAAG
CGCACGTGGTCAAGGAGCACCTTGGCCCGGCGTTCAAGCAGTTCACGTTT
TCGTTCAAGGCGCTCGTGGAGAACGACCGCTTCTTCTTGGACCTCACGCT
GTGGCGGCAGCGAGGCAGCGGACGCGCAGTGGCCACCGACCAGCACGGCA
AGATACACATGAAACAAGGCGACCAAATCGGCGTTCAGGTGAGCGCGCTC
GAGTGTGATTGCCTTTGTGAGATGAACAGGTTCACCACGAACCTTTCCAA
ACCAAAGCACTGGCCCATATACATGCCTGACCGAGACAACGACAACGAGC
TGTTTTTCACCGAGCGGGTTCCAAAGAAGAGGATCGTGCTGATGAAAAGC
ATTGAGGACGAATGGTTGCAGTTCCACTCCATTGGTTGTAGCCTGGTGGT
GAGCGTCTCGCTACGCTGGATAGAGCCAGCGAGAGGATCCCTGTATCTGA
AGCAAGTGCCCGACCCTGACTTGGTTTCGTAA